Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAAGGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATTTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATGAAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCATCCCCTTCCATTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAA  >  BK006939/337165‑337745
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                          
CCGTAAAAGTGAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACTCAGTCCAAACGCGGTCAACTAGTCAGCACCGGGGTGGCTTTCTTTATCTATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATATTTATAATTAATCAA‑GGAAAAAAAAAAGAG                                                                                                                                                                                                                                                                                         <  SRR13385772.407866/301‑1 (MQ=60)
                GGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGCATAGTTATAATTAATCAATG‑AAAAAAAAACGAGAAAGTAAAAAATGTT                                                                                                                                                                                                                                                                          >  SRR13385772.313102/1‑300 (MQ=60)
                                      AACATGAGGCTCTAGAATGTGTTAATCCTCCATTGACATCCGCCACCCTTTCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGTACCTGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTTTCCCATTTTTCTTTTTCTGTTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATT                                                                                                                                                                                                                                                   <  SRR13385772.1112180/301‑1 (MQ=60)
                                         ATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAAAAAGTAAAAAATGTTAACACAACTAATATAAACTAATcttc                                                                                                                                                                                                                                                >  SRR13385772.320515/1‑297 (MQ=60)
                                                        GTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAACCGCGGTCAACGAGTCAGCACCGGAGTGGCTGTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAAC                                                                                                                                                                                                                                  <  SRR13385772.789458/300‑1 (MQ=60)
                                                                  TCAATTGACATCCGCCACCATTGCATTGCACAAAGTCCAAACGCGGTCAACGAGTAAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCACATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATACTTATAATTAATCAATG‑AAACAAAAAAGAAAACTTACAAAATGTTAAAACAACTAATATACACTAATTTTCATTGATAAAAGAAAATGTTGTAATT                                                                                                                                                                                                                       >  SRR13385772.956767/1‑301 (MQ=60)
                                                                   CCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTATAACAACTAATATACACTATTTTTCTTTGATAACAGATCTTATTGTAGTTT                                                                                                                                                                                                                      >  SRR13385772.406904/1‑301 (MQ=60)
                                                                                                                         CAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAAC                                                                                                                                                                 <  SRR13385772.275465/300‑1 (MQ=60)
                                                                                                                                     GGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGATACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGATGTAGTTTTATTCCGTTGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGCAGTATATAT                                                                                                                                                     >  SRR13385772.1173814/1‑300 (MQ=60)
                                                                                                                                                                 TAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATT                                                                                                                        >  SRR13385772.615613/1‑301 (MQ=60)
                                                                                                                                                                        GGTCCCATTTTGCTTTTTCGAGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTGGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCT                                                                                                                  <  SRR13385772.406633/300‑1 (MQ=60)
                                                                                                                                                                               TTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATAAACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATCTACTTAGCACTATAATATCCAGTTTCAATTTACTCTGTCAGAAT                                                                                                          >  SRR13385772.195667/1‑301 (MQ=60)
                                                                                                                                                                                           TGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAACAAATGTTAAAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTCTAATATCAAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTG                                                                                              >  SRR13385772.158033/1‑301 (MQ=60)
                                                                                                                                                                                                   TATATGTTATACAACAATGGAATCGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGCAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACACAACAGCAGTCTATATCCTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTATT                                                                                      >  SRR13385772.586652/1‑301 (MQ=60)
                                                                                                                                                                                                            TACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTG                                                                                                                                                                                                             <  SRR13385772.523515/173‑1 (MQ=60)
                                                                                                                                                                                                                    TGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATCGTTATAATTAATCAATG‑CAAAAAAAACGAGCAAGTAAAAAATGTTACAACACCTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTCGGGAGGAGGGTGAATTTTTTTTATTTCCTTTTAAACATCACACCAGAACTCTATATACTTAGCACTATCATATCCAGTTTCACTTTGCTCTGTCCGATTCCTAATTCTCTGGTTTTCTTTGTTTTACCCCCCCCTT                                                                     >  SRR13385772.1047673/1‑301 (MQ=60)
                                                                                                                                                                                                                             CAAAATCCTAGGTATGTTATTAATCGGAAAACTACTATCTCGAACGAAGAGTTATAATTAATCAAT‑TAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCATAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTAT                                                             <  SRR13385772.1209444/300‑1 (MQ=60)
                                                                                                                                                                                                                             CAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATC                                                            >  SRR13385772.455032/1‑301 (MQ=60)
                                                                                                                                                                                                                                                  AATCGGAAAACTACTATCTCGAACGAATAGGTATAATTAAACAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATTTACACTGATTGTCCTTGATAACAGAACTTTTTGTAGTTTTATTCCGTGGGGATGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGGCTATATACTTAGCACTATAAGTTCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTGTTCTTTGTTTTACCACCCCCTTCCATTTATCATCATGGTATTTTTTTTTTag                                       <  SRR13385772.765654/301‑3 (MQ=60)
                                                                                                                                                                                                                                                     CGAAAAACTACTAGCCCGAACGAATAGTTATAATTAATAAATG‑‑AAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAAATGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAAT                                   <  SRR13385772.290162/300‑1 (MQ=60)
                                                                                                                                                                                                                                                         AAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAAAAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGCAGGGAGGAGGGAGAATTTTTTTTAATTAGTTTTAAAGACCAACACAGAAGTCTATATCCTTAGCACTATAATATCCAGTTTAAATTTGCTCTGTCAGAATCCGACTTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATC                               >  SRR13385772.16346/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                 GATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACGCTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGAGAGGAGGGTGAATTGTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACGTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTG        <  SRR13385772.1293317/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                       ataaacaatgAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGGTTGATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTAGAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTGTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAA  <  SRR13385772.521395/291‑1 (MQ=60)
                                                                                                                                                                                                                                                                                         ATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTTTCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTAAATCTTTGAAGTAGTTTGTGGGAA  >  SRR13385772.690668/1‑298 (MQ=60)
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                          
CCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAAGGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATTTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATGAAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCATCCCCTTCCATTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAA  >  BK006939/337165‑337745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑