Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TACTCTTTAATTTGGTATCATTGTTTGTCTTAGTACTTAAATTGTGCCTCTGGAACTGATCAAATTCCTTTCTCCATCACATGAGTACGAGGAGGGGTGTTAAGGAATTAAAGACAGTCTACTAAAACTATTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCCAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACAGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCGAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTA  >  BK006942/325962‑326510
                                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                     
TACTCTTTAATTTGGTATCATTGTTTGTCTTAGTACTTAAATTGTGCCTCTGGAACTGATCAAATTCCTTTCTCCATCACATGAGTACGAGGAGGGGTGTTAAGGAATTAAAGACAGTCTACTAAAACTATTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCAT                                                                                                                                                                                                                                                          >  SRR13385772.500195/1‑301 (MQ=60)
   TCTTTAATTTGGTATCATTGTTTGTCTTAGTACTTAAATTGTGCCTCTGGAACTGATCAAATTCCTTTCTCCATCACATGAGTACGAGGAGGGGTGTTAAGGAATTAAAGACAGTCTACTAAAACTATTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTG                                                                                                                                                                                                                                                       >  SRR13385772.54209/1‑301 (MQ=60)
        AATTTGGTATCATTGTTTGTCTTAGTACTTAAATTGTGCCTCTGGAACTGATCAAATTCCTTTCTCCATCACATGAGTACGAGGAGGGGTGTTAAGGAATTAAAGACAGTCTACTAAAACTATTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATT                                                                                                                                                                                                                                                   <  SRR13385772.325053/300‑1 (MQ=60)
                ATCATTGTTTGTCTTAGTACTTAAATTGTGCCTCTGGAACTGATCAAATTCCGTTCTCCATCACATGAGTACGAGGAGTGGTGTTAAGGAATTAAAGACAGTCTACTAAAACTAGTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAAGCTTAAAACGAGGAGTAACACTGCTGCTCTCTTTATTCTTGTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCAGCCAATAAATTAAACAACCATGGAAGCGAGAGGACGGCTGTTGAATCATCGGCATTCAATTGGA                                                                                                                                                                                                                                           <  SRR13385772.861317/300‑1 (MQ=60)
                                                   GGAACTGAGCAAATTCCTTTCTCCATCACATGATTACGAGGAGGGGTGTTAATGAATTAAAGACAGTCTACTAAAACTAGTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTGTTCGTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGAGAGAGGACGGCTGTTGAATCATCTGCATGCAATTGGATTGAAAAACGACAACACCAAGTTAGATCCGAAAAC                                                                                                                                                                                                        <  SRR13385772.734292/300‑1 (MQ=60)
                                                    GAACTGATCACATTCCTTTCTCCATCACATGAGTACGAGGAGGGGTGTTAAGGAATTAAAGCCAGTCTACTAAAGCTATTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTCTCTCATTTTCTCTGCGCGTCGGAATGTTACATCATCCACTAAATTAAACAGCCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTT                                                                                                                                                                                                      <  SRR13385772.275552/301‑1 (MQ=60)
                                                                 TCCTTGCTCCATCACATGAGTACGAGGAGGGGTGTTAAGGAATTAAAGACAGTCTACTAAAACTATTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATT                                                                                                                                                                                          <  SRR13385772.1036729/300‑1 (MQ=60)
                                                                         CCATCACATGAGTACGAGGAGGGGTGTTAAGGAATTAAAGACAGTCTACTAAAACTATTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTA                                                                                                                                                                                 <  SRR13385772.1178451/301‑1 (MQ=60)
                                                                          CATCACATGAGTACGAGGAGGGGTGTTAAGGAATTAAAGACAGTCTACTAAAACTATTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGCGATCCGAAAACTTAATGAACAGATTATCTGCCTAC                                                                                                                                                                                >  SRR13385772.1057323/1‑301 (MQ=60)
                                                                           ATCACATGAGTACGAGGAGGGGTTTTAAGGAATTAAAGACAGTCTACTAAAACTATTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACT                                                                                                                                                                               <  SRR13385772.75967/301‑1 (MQ=60)
                                                                             CACATGAGTACGAGGAGGGGTGTTAAGGAATTAAAGACAGTCTACTAAAACTATTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTT                                                                                                                                                                             >  SRR13385772.125727/1‑301 (MQ=60)
                                                                                                              AAGACAGTCTACTAAAACTATTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGA                                                                                                                                             >  SRR13385772.839235/1‑300 (MQ=60)
                                                                                                                                                                  AGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTCTTATTTTCTTATCTACTTTTCTCTGCGAGTCGGAATGTCAAATCATCCAATAATTTAAACAAACATGCAAGCGAGAGGAAGGCTGTTGACTAATCTGCATTCAATTGGATTGACAAACGACAACACCAAGTGAGATCCGAACAATTCATGAACCGATTCTCTGCATACTTTTTGACCT                                                                                                                                                                      >  SRR13385772.1084690/1‑223 (MQ=60)
                                                                                                                                                                      GACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTAAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCG                                                                                    <  SRR13385772.318070/301‑1 (MQ=60)
                                                                                                                                                                                         AGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGTTCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTA                                                                 <  SRR13385772.355274/301‑1 (MQ=60)
                                                                                                                                                                                            AACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATA                                                               <  SRR13385772.999229/300‑1 (MQ=60)
                                                                                                                                                                                             ACACTTCTGCTCTCTTTATTCTGTTCGTATCTCATTTTCTCTTCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGGTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTTCCCTTTTTGAGTATAATTTCTCACAAAGAACGTGTATTGTTTAGGCAATTAGGAAAGAATGAAACAGCTAATAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACA                                                             <  SRR13385772.986216/301‑1 (MQ=60)
                                                                                                                                                                                                  GCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGAT                                                         <  SRR13385772.52331/300‑1 (MQ=60)
                                                                                                                                                                                                                               TTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAACTAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACACGATTGATCCCGACTGGGACAATGCGCAAACTGC                           >  SRR13385772.443362/1‑301 (MQ=60)
                                                                                                                                                                                                                                  TCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAA                         >  SRR13385772.1246463/1‑300 (MQ=60)
                                                                                                                                                                                                                                                      ACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACTGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTTCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTG    <  SRR13385772.550319/301‑1 (MQ=60)
                                                                                                                                                                                                                                                        ATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTTAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTACCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTA  <  SRR13385772.1089863/301‑1 (MQ=60)
                                                                                                                                                                                                                                                        ATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGT   >  SRR13385772.453777/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                     
TACTCTTTAATTTGGTATCATTGTTTGTCTTAGTACTTAAATTGTGCCTCTGGAACTGATCAAATTCCTTTCTCCATCACATGAGTACGAGGAGGGGTGTTAAGGAATTAAAGACAGTCTACTAAAACTATTTCCCTAAGCATGCTTAAATCATTAAAATCCAGAAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCCAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACAGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCGAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTA  >  BK006942/325962‑326510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑