Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCCAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACAGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCGAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAAAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAGGAATCCAAAACT  >  BK006942/326128‑326681
                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                              
GACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTAAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCG                                                                                                                                                                                                                                                               <  SRR13385772.318070/301‑1 (MQ=60)
                   AGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGTTCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTA                                                                                                                                                                                                                                            <  SRR13385772.355274/301‑1 (MQ=60)
                      AACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATA                                                                                                                                                                                                                                          <  SRR13385772.999229/300‑1 (MQ=60)
                       ACACTTCTGCTCTCTTTATTCTGTTCGTATCTCATTTTCTCTTCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGGTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTTCCCTTTTTGAGTATAATTTCTCACAAAGAACGTGTATTGTTTAGGCAATTAGGAAAGAATGAAACAGCTAATAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACA                                                                                                                                                                                                                                        <  SRR13385772.986216/301‑1 (MQ=60)
                            GCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGAT                                                                                                                                                                                                                                    <  SRR13385772.52331/300‑1 (MQ=60)
                                                         TTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAACTAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACACGATTGATCCCGACTGGGACAATGCGCAAACTGC                                                                                                                                                                                                      >  SRR13385772.443362/1‑301 (MQ=60)
                                                            TCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAA                                                                                                                                                                                                    >  SRR13385772.1246463/1‑300 (MQ=60)
                                                                                ACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACTGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTTCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTG                                                                                                                                                                               <  SRR13385772.550319/301‑1 (MQ=60)
                                                                                  ATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTTAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTACCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTA                                                                                                                                                                             <  SRR13385772.1089863/301‑1 (MQ=60)
                                                                                  ATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGT                                                                                                                                                                              >  SRR13385772.453777/1‑300 (MQ=60)
                                                                                                                             GTTGAATCATCTGCATTCAATTGGAGTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTGTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTT                                                                                                                                  <  SRR13385772.40992/301‑1 (MQ=60)
                                                                                                                                         GCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACGTAAAGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTATGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCACGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTAT                                                                                                                          <  SRR13385772.1074450/297‑1 (MQ=60)
                                                                                                                                             TCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTT                                                                                                                  >  SRR13385772.13479/1‑301 (MQ=60)
                                                                                                                                                    GATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCGTTTTGAGTAGAAGGTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATTATTATTGCTTTTTATCTGGT                                                                                                           <  SRR13385772.1019436/301‑1 (MQ=60)
                                                                                                                                                       TGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGC                                                                                                                                                                                                               <  SRR13385772.657668/198‑1 (MQ=60)
                                                                                                                                                                 CAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCT                                                                                               >  SRR13385772.133503/1‑300 (MQ=60)
                                                                                                                                                                                     AAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTC                                                                           >  SRR13385772.382860/1‑300 (MQ=60)
                                                                                                                                                                                      AACTTAATGAACAGATTATCTGCCGACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAA                                                                         <  SRR13385772.42959/301‑1 (MQ=60)
                                                                                                                                                                                                                  TTTTGCCCGTGTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAAAGAAATAGCTAAGGTTGACAAGGGCCGTTACATTTTTGAAGTACTATACAAGATTGAGCCCGACTGGGACAATGCGCAAACTGCAAAATTGTATAATGTTGATGGTTTAGATAACACGTTGGCCTCATTGTTAGGGGATAGATTAAGATCTTATGATTATTGCTGTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACA                                              <  SRR13385772.513774/300‑1 (MQ=60)
                                                                                                                                                                                                                                               AAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGACGTTACATTTTTGAAGAACTATACAAGATTGATCCCGACTGGGCCAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTACATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGACGAAAATTAACG                >  SRR13385772.1164761/1‑301 (MQ=60)
                                                                                                                                                                                                                                                 AGAACTTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATTCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTAGCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAA              <  SRR13385772.1112935/301‑1 (MQ=60)
                                                                                                                                                                                                                                                  GAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCGACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAG             <  SRR13385772.1117876/301‑1 (MQ=60)
                                                                                                                                                                                                                                                            TGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAAC   >  SRR13385772.648166/1‑301 (MQ=60)
                                                                                                                                                                                                                                                              TTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACT  <  SRR13385772.1247833/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                              
GACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCCAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACAGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCGAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAAAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAGGAATCCAAAACT  >  BK006942/326128‑326681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑