Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCCAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACAGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCGAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAAAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAGGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATG  >  BK006942/326126‑326708
                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                          
AAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGC                                                                                                                                                                                                                                                                                             <  SRR13385771.402985/301‑1 (MQ=60)
            AAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGATTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGATATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATCGTTGAGTCATTTATGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTT                                                                                                                                                                                                                                                                                 >  SRR13385771.556795/1‑301 (MQ=60)
            AAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATGTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACGTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTT                                                                                                                                                                                                                                                                                  <  SRR13385771.1682858/300‑1 (MQ=60)
               ACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGA                                                                                                                                                                                                                                                                               >  SRR13385771.781275/1‑300 (MQ=60)
                      GTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATGAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTAT                                                                                                                                                                                                                                                                       >  SRR13385771.422990/1‑301 (MQ=60)
                                                         CATTTTCTCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT                                                                                                                                                                                                                                    >  SRR13385771.136151/1‑301 (MQ=60)
                                                                TCTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCCTTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAAAATGATCCCGACAGGGACAATGCGCAAACTGGCAAA                                                                                                                                                                                                                              >  SRR13385771.869760/1‑300 (MQ=60)
                                                                 CTGCGAGTCTGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCTGACTGGGACAATGCGCAAACT‑GCAAA                                                                                                                                                                                                                              <  SRR13385771.1162481/298‑1 (MQ=60)
                                                                 CTGCGAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAACCT‑GCAAAATT                                                                                                                                                                                                                           >  SRR13385771.1053761/1‑301 (MQ=60)
                                                                          GGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGTAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATGTTATAATGT                                                                                                                                                                                                                  <  SRR13385771.935714/301‑1 (MQ=60)
                                                                            AATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGACATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATACCGACTGGGACAATGCGCAACCT‑GCAAAATTTTATAATGTTG                                                                                                                                                                                                                >  SRR13385771.340122/1‑301 (MQ=60)
                                                                               GTTACATCAGCCAATAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGAT                                                                                                                                                                                                              <  SRR13385771.1546408/300‑1 (MQ=60)
                                                                                  ACATCATCCAGTAAATTAAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGT                                                                                                                                                                                                           <  SRR13385771.1294842/300‑1 (MQ=60)
                                                                                                   AAACAACCATGCAAGCGAGAGGACGGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGC                                                                                                                                                                                          <  SRR13385771.1792788/300‑1 (MQ=60)
                                                                                                                               GTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCT                                                                                                                                                              <  SRR13385771.898864/300‑1 (MQ=60)
                                                                                                                                    ATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGAT                                                                                                                                                        <  SRR13385771.45251/301‑1 (MQ=60)
                                                                                                                                           GCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGC                                                                                                                                                  <  SRR13385771.1294756/300‑1 (MQ=60)
                                                                                                                                                 AATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTAT                                                                                                                                           <  SRR13385771.1673830/301‑1 (MQ=60)
                                                                                                                                                             AAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGTGACAATGCGCAAACT‑GCAAAATTTTAGAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAG                                                                                                                               <  SRR13385771.557010/301‑1 (MQ=60)
                                                                                                                                                                    AACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCATTTAGGAAATAATGAAAGAGCTAAGAGTGATAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTTATCCCGACTGGGTCAATGCGCAAACT‑GCAAATTTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCGTTGTTAGGTTATATCTTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTAC                                                                                                                        >  SRR13385771.946662/1‑301 (MQ=60)
                                                                                                                                                                                                                TACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGCTTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATCCAACCGTAAATCCTCATGATTTGCAA                                                                             >  SRR13385771.1094083/1‑300 (MQ=60)
                                                                                                                                                                                                                                      GAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGA                                                       >  SRR13385771.1426969/1‑300 (MQ=60)
                                                                                                                                                                                                                                                CAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGCTTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAAC                                            >  SRR13385771.1322365/1‑301 (MQ=60)
                                                                                                                                                                                                                                                               GTGGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTGGTAAGTACTATACAAGATGGATGCCGACTGGTACAATGCGCAAACT‑GCAAAATTGTATAATGTTGATGGGGTAGATAACACGGTGGCCTCATTGTTAGGGGAGAGAGTAAGATCTTATGATTATTGCTTTTTATCTGGGCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTGCCATTTCTGAAGAAAATTAACGAAGAATCCAAATC                              <  SRR13385771.1029336/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                TTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTACATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGACGAAAATTAACGAAGAATCCAAAACTG                            >  SRR13385771.217311/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                      CAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGT                      >  SRR13385771.1729495/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                          TAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCC                  >  SRR13385771.1314058/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                      AAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGA      <  SRR13385771.1454129/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                          AGCTAAGAGTGACAAGTGCCGTTACCTTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCACCCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGCAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGCCATG  >  SRR13385771.6923/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                          
AAGACTAATCTTAAAACGATTAGTAACACTGCTGCTCTCTTTATTCTTTTCTTATCTCATTTTCTCTGCCAGTCGGAATGTTACATCATCCAATAAATTAAACAACCATGCAAGCGAGAGGACAGCTGTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCGAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACT‑GCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAAAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAGGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATG  >  BK006942/326126‑326708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑