Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCGAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAAAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAGGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACT  >  BK006942/326253‑326822
                                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                          
GTTGAATCATCTGCATTCAATTGGAGTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTGTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTT                                                                                                                                                                                                                                                                               <  SRR13385772.40992/301‑1 (MQ=60)
            GCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACGTAAAGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTATGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCACGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTAT                                                                                                                                                                                                                                                                       <  SRR13385772.1074450/297‑1 (MQ=60)
                TCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTT                                                                                                                                                                                                                                                               >  SRR13385772.13479/1‑301 (MQ=60)
                       GATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCGTTTTGAGTAGAAGGTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATTATTATTGCTTTTTATCTGGT                                                                                                                                                                                                                                                        <  SRR13385772.1019436/301‑1 (MQ=60)
                                    CAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCT                                                                                                                                                                                                                                            >  SRR13385772.133503/1‑300 (MQ=60)
                                                        AAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTC                                                                                                                                                                                                                        >  SRR13385772.382860/1‑300 (MQ=60)
                                                         AACTTAATGAACAGATTATCTGCCGACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAA                                                                                                                                                                                                                      <  SRR13385772.42959/301‑1 (MQ=60)
                                                                                     TTTTGCCCGTGTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAAAGAAATAGCTAAGGTTGACAAGGGCCGTTACATTTTTGAAGTACTATACAAGATTGAGCCCGACTGGGACAATGCGCAAACTGCAAAATTGTATAATGTTGATGGTTTAGATAACACGTTGGCCTCATTGTTAGGGGATAGATTAAGATCTTATGATTATTGCTGTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACA                                                                                                                                                                                           <  SRR13385772.513774/300‑1 (MQ=60)
                                                                                                                  AAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGACGTTACATTTTTGAAGAACTATACAAGATTGATCCCGACTGGGCCAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTACATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGACGAAAATTAACG                                                                                                                                                             >  SRR13385772.1164761/1‑301 (MQ=60)
                                                                                                                    AGAACTTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATTCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTAGCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAA                                                                                                                                                           <  SRR13385772.1112935/301‑1 (MQ=60)
                                                                                                                     GAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCGACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAG                                                                                                                                                          <  SRR13385772.1117876/301‑1 (MQ=60)
                                                                                                                               TGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAAC                                                                                                                                                >  SRR13385772.648166/1‑301 (MQ=60)
                                                                                                                                 TTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACT                                                                                                                                               <  SRR13385772.1247833/300‑1 (MQ=60)
                                                                                                                                                                     GACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGCCATGCCAACTGG                                                                                                            >  SRR13385772.302301/1‑299 (MQ=60)
                                                                                                                                                                                      TTTTGAAGTACTATGCAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGATGATGGTGTAGATAACACGTTGTCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCACATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAAGGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACC                                                                                          <  SRR13385772.322973/300‑1 (MQ=60)
                                                                                                                                                                                                        GATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATC                                                                        >  SRR13385772.1120468/1‑300 (MQ=60)
                                                                                                                                                                                                                              gcgacaaaTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTT                                                 <  SRR13385772.500092/293‑1 (MQ=60)
                                                                                                                                                                                                                                GCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGG                                               >  SRR13385772.1032197/1‑301 (MQ=60)
                                                                                                                                                                                                                                 CAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTA                                                                                                                                            >  SRR13385772.296149/1‑207 (MQ=60)
                                                                                                                                                                                                                                                              TGTAGATAACACGTTGGCCTCCTTGTCAGGGGAGAGATTAAGATATTCTGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAAACGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTCACGAAGAATCCACCACTGTAATGTGGCCTATTATCACAGACATGACCACCGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCCAACTTTAATGGTAACTTTTGGTCCACCTGGAATAGGTTGAGCAAAGGA                    >  SRR13385772.827449/1‑298 (MQ=60)
                                                                                                                                                                                                                                                                 AGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGT              >  SRR13385772.957734/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                            TGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAACATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGCCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAAC   >  SRR13385772.1150330/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                             GGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACT  >  SRR13385772.762523/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                          
GTTGAATCATCTGCATTCAATTGGATTGAAAAACGACAACACCAAGTGAGATCCGAAAACTTAATGAACAGATTATCTGCCTACTTTTTGCCCTTTTTGAGTAGAAGTTCTCACAAAGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCGAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAAAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAGGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACT  >  BK006942/326253‑326822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑