Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCGAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAAAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAGGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACTATTGCTGAAAAGGATGTTCCTTTATTTTTGAAACAGTTGAAAGTGATGGAATTTTCAAAAAACGAATTACCATTCCAAATAGTATCCACGGGAAATGAACTATCAGCAGAGTCTATTGCTAAAATTTCT  >  BK006942/326369‑326951
                                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                          
AGAACTTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATTCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTAGCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAA                                                                                                                                                                                                                                                                                            <  SRR13385772.1112935/301‑1 (MQ=60)
 GAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCGACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAG                                                                                                                                                                                                                                                                                           <  SRR13385772.1117876/301‑1 (MQ=60)
           TGTTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAAC                                                                                                                                                                                                                                                                                 >  SRR13385772.648166/1‑301 (MQ=60)
             TTGAGGCAATTAGGAAATAATGAAATAGCTAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACT                                                                                                                                                                                                                                                                                <  SRR13385772.1247833/300‑1 (MQ=60)
                                                 GACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGCCATGCCAACTGG                                                                                                                                                                                                                                             >  SRR13385772.302301/1‑299 (MQ=60)
                                                                  TTTTGAAGTACTATGCAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGATGATGGTGTAGATAACACGTTGTCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCACATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAAGGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACC                                                                                                                                                                                                                           <  SRR13385772.322973/300‑1 (MQ=60)
                                                                                    GATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATC                                                                                                                                                                                                         >  SRR13385772.1120468/1‑300 (MQ=60)
                                                                                                          gcgacaaaTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTT                                                                                                                                                                                  <  SRR13385772.500092/293‑1 (MQ=60)
                                                                                                            GCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGG                                                                                                                                                                                >  SRR13385772.1032197/1‑301 (MQ=60)
                                                                                                             CAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTA                                                                                                                                                                                                                                                                             >  SRR13385772.296149/1‑207 (MQ=60)
                                                                                                                                          TGTAGATAACACGTTGGCCTCCTTGTCAGGGGAGAGATTAAGATATTCTGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAAACGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTCACGAAGAATCCACCACTGTAATGTGGCCTATTATCACAGACATGACCACCGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCCAACTTTAATGGTAACTTTTGGTCCACCTGGAATAGGTTGAGCAAAGGA                                                                                                                                                     >  SRR13385772.827449/1‑298 (MQ=60)
                                                                                                                                             AGATAACACGTTGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGT                                                                                                                                               >  SRR13385772.957734/1‑301 (MQ=60)
                                                                                                                                                        TGGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAACATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGCCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAAC                                                                                                                                    >  SRR13385772.1150330/1‑301 (MQ=60)
                                                                                                                                                         GGCCTCATTGTTAGGGGAGAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACT                                                                                                                                   >  SRR13385772.762523/1‑301 (MQ=60)
                                                                                                                                                                                      CTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACTATTGCTGAAAAGGATGTTCCTTTATTTTT                                                                                                      >  SRR13385772.386417/1‑301 (MQ=60)
                                                                                                                                                                                        TATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGCGAGGCAGTTCCGGCACCCGAGGTTGATATGGAACAATCAAACTTTAATGGTAACTTTTGGTCCATCTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACTATTGCTGAAAAGGATGTTCCTTTATTTTTG                                                                                                     >  SRR13385772.852725/1‑300 (MQ=60)
                                                                                                                                                                                                             GGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAA                                                                                                                                                                                             >  SRR13385772.970915/1‑191 (MQ=60)
                                                                                                                                                                                                                       ATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGCAGAGGTTTTGTTTTAACTATTGCTGAAAAGGATGTTCCTTTATTTTTGAAACAGTTGAAAGTGATGGAATCTTCAAAAA                                                                      >  SRR13385772.998291/1‑300 (MQ=60)
                                                                                                                                                                                                                        TCCTACTGCAATATTTTCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAA                                                                                                                                                         <  SRR13385772.405540/216‑1 (MQ=60)
                                                                                                                                                                                                                                          AAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTACTGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACTATTGCTGAAAAGGATGTTCCTTTATTTTTGAAACAGTTGAAAGTGATGGAATCTTCAAAAAACGAATTACCATTCCAAAT                                                   >  SRR13385772.1123814/1‑300 (MQ=60)
                                                                                                                                                                                                                                                       AATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACTATTGCTGAAAAGGATGTTCCTTTATTTTTGAAACAGTTGAAAGTGATGGAATCTTCAAAAAACGAATTACCATTCCAAATAGTATCCACGGGAA                                     <  SRR13385772.501630/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                 ATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATAAAACTTTACTGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACTATTGCTGAAAAGGATGTTCCTTTATTTTTGAAACAGTTGAAAGTGATGGAATCTTCAAAAAACGAATTACCATTCCAAATACTATCCAAGGGCAATGAACTATC                           >  SRR13385772.448293/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                  TTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGTCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACTATTGCTGAAAAGGATGTTCCTTTATTTTTGAAACAGTTGAAAGTGATGGAATCTTCAAAAAACGAATTACCATTCCAAATAGTATCCACGGGAAATGAACTATC                           >  SRR13385772.1230316/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                          ACAGAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACTATTGCTGAAAAGGATGTTCCTTTATTTTTGAAACAGTTGAAAGTGATGGAATCTTCAAAAAACGAATTACCATTCCAAATAGTATCCACGGGAAATGAACTATCAGCAGAGTC                  <  SRR13385772.879486/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                            ATAATGTTTCCATTTCTGAAGAAAATTAACGAAGAATCCAAAACTGTAATGTTGCCTATTATCACAGACATGACAACTTGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACTATTGCTGAAAAGGATGTTCCTTTATTTTTGAAACAGTTGAAAGTGATGGAATCTTCAAAAAACGAATTACCATTCCAAATAGTATCCACGGGAAATGAACTATCAGCAGAGTCTA                <  SRR13385772.535023/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                             GAAGAAAATTAACGAAGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACTATTGCTGAAAAGGATGTTCCTTTATTTTTGAAACAGTTGAAAGTGATGGAATCTTCAAAAAACGAATTACCATTCCAAATAGTATCCACGGGAAATGAACTATCAGCAGAGTCTATTGCTAAAATTTCT  <  SRR13385772.34315/298‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                          
AGAACGTGTATTGTTGAGGCAATTAGGAAATAATGAAATAGCGAAGAGTGACAAGTGCCGTTACATTTTTGAAGTACTATACAAGATTGATCCCGACTGGGACAATGCGCAAACTGCAAAATTTTATAATGTTGATGGTGTAGATAACACGTTGGCCTCATTGTTAGGGGAAAGATTAAGATCTTATGATTATTGCTTTTTATCTGGTCAATTAGATCCTACTGCAATATTTGCAAATTCAACCGTAAATCCTCATGATTTGCAAAACAGAATGTTTCCATTTCTGAAGAAAATTAACGAGGAATCCAAAACTGTAATGTGGCCTATTATCACAGACATGACAACTGGAGAGGCAGTTCCGGCACCCGAGGTTGATATGGAATCATCAAACTTTAATGGTAACTTTTGGTCCAACTGGAATAGGTTGAGCAAAGGAAGAGGTTTTGTTTTAACTATTGCTGAAAAGGATGTTCCTTTATTTTTGAAACAGTTGAAAGTGATGGAATTTTCAAAAAACGAATTACCATTCCAAATAGTATCCACGGGAAATGAACTATCAGCAGAGTCTATTGCTAAAATTTCT  >  BK006942/326369‑326951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑