Notes

Publication:

10.15252/msb.20188462

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 2 3
2 3 4
2 5 7

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 18 22
Multiple Base Substitutions 1 1
Deletions 8 23
Insertions 3 3
Mobile Element Insertions 2 2
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 32 51

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F10 I1 R1 7 0 77.1 1661422 90.8% 1508571 237.7
A1 F86 I0 R1 57 0 148.3 2730317 88.3% 2410869 293.0
A1 F86 I1 R1 14 0 98.6 2059574 91.1% 1876271 252.9
A2 F10 I1 R1 14 0 43.0 832284 89.9% 748223 267.2
A2 F27 I1 R1 10 0 85.3 1694614 91.2% 1545487 265.7
A2 F88 I0 R1 52 0 149.2 2843346 86.4% 2456650 293.0
A2 F88 I1 R1 20 0 128.7 2485166 90.0% 2236649 275.4

Mutation Needle Plot

Mutation Targets

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