Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 3 3
3 3 4
5 3 3
7 3 3
9 3 4
11 3 3
7 19 21

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 32 55
Multiple Base Substitutions 0 0
Deletions 10 15
Insertions 4 4
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 46 74

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 48 0 56.2 2637589 94.4% 2489884 139.4
A1 F26 I1 R1 51 0 75.7 3486856 95.7% 3336921 139.9
A1 F43 I1 R1 48 0 71.3 3281712 94.9% 3114344 141.3
A1 F61 I0 R1 1630 0 71.6 3242910 94.6% 3067792 142.6
A3 F27 I1 R1 49 0 77.1 3243926 97.4% 3159583 142.0
A3 F47 I1 R1 48 0 64.3 2971298 95.2% 2828675 140.1
A3 F68 I0 R1 1478 0 70.1 3286954 95.2% 3129180 138.1
A3 F68 I2 R1 55 0 36.5 1605796 97.0% 1557622 145.2
A5 F26 I1 R1 50 0 66.1 3082592 94.5% 2913049 138.5
A5 F49 I1 R1 51 0 69.4 3159052 95.0% 3001099 141.2
A5 F72 I0 R1 1555 0 79.3 3453934 95.3% 3291599 144.7
A7 F29 I1 R1 51 0 61.6 2584624 97.0% 2507085 142.0
A7 F47 I1 R1 48 0 61.8 2859710 95.0% 2716724 142.0
A7 F69 I0 R1 1275 0 57.1 2571976 94.7% 2435661 143.6
A9 F31 I1 R1 51 0 63.9 2973458 94.3% 2803970 140.5
A9 F57 I1 R1 50 0 66.5 3133720 95.2% 2983301 141.7
A9 F75 I0 R1 1481 0 53.9 2440260 94.1% 2296284 142.0
A9 F75 I2 R1 53 0 30.3 1355354 93.4% 1265900 146.5
A11 F26 I1 R1 51 0 62.6 2978688 93.3% 2779115 138.7
A11 F47 I1 R1 54 0 64.9 2940802 96.5% 2837873 141.3
A11 F65 I0 R1 1740 0 59.2 2734172 94.6% 2586526 140.8

Mutation Needle Plot

Mutation Targets

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