breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	11,656	C→T	7.4%	P185L (CCG→CTG) ‡	dnaN →	DNA polymerase III subunit beta
RA	11,657	G→C	7.0%	P185P (CCG→CCC) ‡	dnaN →	DNA polymerase III subunit beta
RA	31,021	G→A	7.9%	P197P (CCG→CCA)	PP_0026 →	cobalt/cadmium/zinc exporter
RA	31,024	G→T	8.6%	R198R (CGG→CGT)	PP_0026 →	cobalt/cadmium/zinc exporter
RA	31,025	A→C	7.6%	T199P (ACG→CCG)	PP_0026 →	cobalt/cadmium/zinc exporter
RA	31,028	T→C	7.7%	W200R (TGG→CGG)	PP_0026 →	cobalt/cadmium/zinc exporter
RA	66,400	Δ1 bp	7.3%	coding (1458/1653 nt)	betA‑I →	choline dehydrogenase
RA	74,159	A→T	9.3%	K212M (AAG→ATG)	PP_0063 →	lipid A biosynthesis lauroyl acyltransferase
RA	74,165	T→G	8.3%	V214G (GTG→GGG) ‡	PP_0063 →	lipid A biosynthesis lauroyl acyltransferase
RA	74,166	G→C	8.4%	V214V (GTG→GTC) ‡	PP_0063 →	lipid A biosynthesis lauroyl acyltransferase
RA	74,167	C→A	8.5%	P215T (CCG→ACG)	PP_0063 →	lipid A biosynthesis lauroyl acyltransferase
RA	74,173	A→T	8.5%	M217L (ATG→TTG)	PP_0063 →	lipid A biosynthesis lauroyl acyltransferase
RA	100,112	C→A	6.8%	G99G (GGG→GGT) ‡	PP_0094 ←	5'‑nucleotidase
RA	100,113	C→A	7.7%	G99V (GGG→GTG) ‡	PP_0094 ←	5'‑nucleotidase
RA	100,116	T→G	7.2%	N98T (AAC→ACC) ‡	PP_0094 ←	5'‑nucleotidase
RA	100,117	T→G	6.7%	N98H (AAC→CAC) ‡	PP_0094 ←	5'‑nucleotidase
RA	107,981:1	+G	5.8%	coding (460/642 nt)	PP_5426 ←	hypothetical protein
RA	107,990	Δ1 bp	5.6%	coding (451/642 nt)	PP_5426 ←	hypothetical protein
RA	107,996	T→C	5.5%	I149V (ATT→GTT)	PP_5426 ←	hypothetical protein
RA	117,253	T→C	6.3%	intergenic (+33/+61)	PP_0111 → / ← metQ	electron transport protein SCO1/SenC/methionine ABC transporter substrate‑binding protein
RA	138,949	G→A	6.9%	R519W (CGG→TGG)	kinB ←	alginate biosynthesis sensor protein KinB
RA	138,950	T→G	7.7%	R518S (AGA→AGC) ‡	kinB ←	alginate biosynthesis sensor protein KinB
RA	138,951	C→A	6.1%	R518I (AGA→ATA) ‡	kinB ←	alginate biosynthesis sensor protein KinB
RA	138,952	T→C	6.9%	R518G (AGA→GGA) ‡	kinB ←	alginate biosynthesis sensor protein KinB
RA	142,401	C→A	10.4%	T115T (ACC→ACA)	PP_0134 →	hypothetical protein
RA	143,586	C→G	8.2%	A12A (GCC→GCG)	PP_0136 →	hypothetical protein
RA	143,591	T→C	8.3%	L14P (CTG→CCG)	PP_0136 →	hypothetical protein
RA	143,594	T→C	8.3%	L15P (CTG→CCG) ‡	PP_0136 →	hypothetical protein
RA	143,595	G→C	8.1%	L15L (CTG→CTC) ‡	PP_0136 →	hypothetical protein
RA	143,596	G→A	7.9%	G16S (GGC→AGC)	PP_0136 →	hypothetical protein
RA	143,599	G→A	7.8%	G17S (GGC→AGC)	PP_0136 →	hypothetical protein
RA	143,604	C→G	7.5%	S18R (AGC→AGG)	PP_0136 →	hypothetical protein
RA	147,556	G→A	12.7%	A178A (GCC→GCT)	PP_0139 ←	lipoprotein
RA	149,898	G→T	6.0%	T351N (ACC→AAC) ‡	PP_0142 ←	ABC transporter permease
RA	149,899	T→C	6.1%	T351A (ACC→GCC) ‡	PP_0142 ←	ABC transporter permease
RA	149,904	T→G	6.4%	H349P (CAC→CCC)	PP_0142 ←	ABC transporter permease
RA	149,906	T→G	6.3%	A348A (GCA→GCC)	PP_0142 ←	ABC transporter permease
RA	149,909	C→A	6.4%	G347G (GGG→GGT)	PP_0142 ←	ABC transporter permease
RA	149,917	A→C	7.8%	S345A (TCG→GCG)	PP_0142 ←	ABC transporter permease
RA	170,838	G→T	8.3%	intergenic (+19/‑551)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	182,034	G→A	11.5%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	11.3%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	11.5%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	195,559	C→A	23.7%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	15.2%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	15.1%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	37.7%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,724	A→G	8.6%	V410V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	14.6%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	16.3%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	20.8%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	25.3%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	10.9%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,879	G→A	23.3%	V795V (GTG→GTA)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	5.9%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	14.4%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	7.4%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,185	C→T	5.9%	T897T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	21.4%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	25.4%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	29.6%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	9.2%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	198,358:1	+G	8.2%	coding (3864/26049 nt)	PP_0168 →	putative surface adhesion protein
RA	198,367	G→C	7.8%	V1291V (GTG→GTC)	PP_0168 →	putative surface adhesion protein
RA	212,694	T→A	7.7%	L6067Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	236,395	C→G	7.5%	G147A (GGC→GCC)	argH ←	argininosuccinate lyase
RA	237,452	T→G	5.5%	D111E (GAT→GAG)	algR →	alginate biosynthesis regulatory protein
RA	237,455	C→A	6.1%	A112A (GCC→GCA)	algR →	alginate biosynthesis regulatory protein
RA	237,457	T→C	6.2%	L113S (TTG→TCG)	algR →	alginate biosynthesis regulatory protein
RA	262,746	Δ1 bp	9.9%	coding (263/282 nt)	PP_0211 →	hypothetical protein
RA	262,752	T→A	11.5%	L90Q (CTG→CAG)	PP_0211 →	hypothetical protein
RA	262,757:1	+C	10.1%	coding (274/282 nt)	PP_0211 →	hypothetical protein
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	284,586	T→A	17.9%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,587	T→A	18.0%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	322,133	G→A	18.7%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,140	T→C	19.5%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	329,843	G→A	8.5%	A43V (GCC→GTC)	gltR‑I ←	two‑component system response regulator
RA	332,461	A→T	8.5%	intergenic (+53/+13)	PP_0272 → / ← PP_0273	ferric siderophore receptor/hypothetical protein
RA	334,603	A→T	9.2%	L28* (TTG→TAG) ‡	PP_0276 ←	Cro/CI family transcriptional regulator
RA	334,604	A→T	9.3%	L28M (TTG→ATG) ‡	PP_0276 ←	Cro/CI family transcriptional regulator
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	337,809	A→G	24.5%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,816:1	+A	22.6%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819	A→C	20.6%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	C→G	20.1%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	G→T	20.6%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,827	Δ1 bp	21.2%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,836	C→T	22.6%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	338,065	G→T	7.5%	A168A (GCC→GCA)	PP_0280 ←	amino acid ABC transporter permease
RA	338,068	A→C	6.2%	S167R (AGT→AGG)	PP_0280 ←	amino acid ABC transporter permease
RA	344,032	A→G	5.5%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	356,720	G→T	7.8%	G22V (GGC→GTC)	tdcG‑I →	L‑serine dehydratase
RA	367,362	C→A	7.7%	intergenic (‑48/+26)	PP_5442 ← / ← PP_0306	hypothetical protein/hypothetical protein
RA	367,367	T→G	9.5%	intergenic (‑53/+21)	PP_5442 ← / ← PP_0306	hypothetical protein/hypothetical protein
RA	380,123	G→A	9.3%	V140V (GTG→GTA)	gbcB →	glycine‑betaine dioxygenase subunit
RA	384,783	C→G	6.9%	R421G (CGC→GGC)	PP_0320 →	methyl‑accepting chemotaxis transducer
RA	384,787	A→T	6.9%	N422I (AAT→ATT)	PP_0320 →	methyl‑accepting chemotaxis transducer
RA	384,791	C→G	7.0%	A423A (GCC→GCG)	PP_0320 →	methyl‑accepting chemotaxis transducer
RA	407,762	A→T	7.1%	A81A (GCT→GCA)	aceF ←	AceF‑S‑acetyldihydrolipoate
RA	407,765	A→T	7.1%	A80A (GCT→GCA)	aceF ←	AceF‑S‑acetyldihydrolipoate
RA	416,121	G→C	8.6%	D297H (GAC→CAC)	waaC →	ADP‑heptose‑‑LPS heptosyltransferase
RA	421,154	Δ1 bp	5.5%	intergenic (+11/+7)	PP_0347 → / ← PP_0348	hypothetical protein/hypothetical protein
RA	421,157	G→A	5.4%	intergenic (+14/+4)	PP_0347 → / ← PP_0348	hypothetical protein/hypothetical protein
RA	421,161	T→A	5.5%	*929C (TGA→TGT)	PP_0348 ←	hypothetical protein
RA	421,165	T→C	5.6%	H928R (CAC→CGC)	PP_0348 ←	hypothetical protein
RA	421,167:1	+A	5.6%	coding (2781/2787 nt)	PP_0348 ←	hypothetical protein
RA	436,896	A→T	5.9%	L131Q (CTG→CAG)	PP_0358 ←	membrane protein
RA	436,899	C→A	5.9%	W130L (TGG→TTG)	PP_0358 ←	membrane protein
RA	436,902	T→G	5.5%	Q129P (CAA→CCA)	PP_0358 ←	membrane protein
RA	436,905	A→T	5.9%	L128Q (CTG→CAG)	PP_0358 ←	membrane protein
RA	446,384	C→G	8.4%	A357G (GCC→GGC)	PP_0368 →	acyl‑CoA dehydrogenase
RA	467,952	T→C	5.0%	K1002R (AAG→AGG)	PP_0386 ←	sensory box protein
RA	467,955	G→T	5.1%	P1001H (CCC→CAC)	PP_0386 ←	sensory box protein
RA	467,959	G→T	5.6%	Q1000K (CAG→AAG)	PP_0386 ←	sensory box protein
RA	467,961	A→C	5.3%	F999C (TTC→TGC)	PP_0386 ←	sensory box protein
RA	467,965	A→C	6.3%	C998G (TGC→GGC)	PP_0386 ←	sensory box protein
RA	467,968	G→A	6.2%	L997L (CTG→TTG)	PP_0386 ←	sensory box protein
RA	471,066	T→C	16.9%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	471,067	G→A	17.1%	intergenic (‑111/+17)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	476,697	A→C	7.1%	Q330P (CAG→CCG) ‡	tsaD →	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
RA	476,698	G→T	7.2%	Q330H (CAG→CAT) ‡	tsaD →	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
RA	492,308	T→C	6.8%	D38G (GAC→GGC)	lptD ←	LPS‑assembly protein LptD
RA	494,830	Δ1 bp	6.2%	coding (591/768 nt)	djlA →	DnaJ‑like protein DjlA
RA	496,096	T→A	12.5%	intergenic (‑63/‑33)	PP_0408 ← / → PP_0409	hypothetical protein/two‑component system sensor histidine kinase
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	501,673	A→T	8.8%	intergenic (+22/‑39)	PP_0412 → / → PP_0413	polyamine ABC transportersubstrate‑binding protein/polyamine ABC transporter permease
RA	501,674	A→T	8.9%	intergenic (+23/‑38)	PP_0412 → / → PP_0413	polyamine ABC transportersubstrate‑binding protein/polyamine ABC transporter permease
RA	501,675	A→T	8.8%	intergenic (+24/‑37)	PP_0412 → / → PP_0413	polyamine ABC transportersubstrate‑binding protein/polyamine ABC transporter permease
RA	503,825	Δ1 bp	7.7%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,831	A→T	13.1%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,832	A→T	13.1%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,837:1	+C	12.3%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,849	C→T	13.8%	intergenic (+52/‑99)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	504,929	C→A	7.7%	P104H (CCC→CAC)	PP_0416 →	phosphoglycolate phosphatase
RA	524,180	T→G	20.3%	intergenic (+47/‑769)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,336	A→G	8.0%	intergenic (+203/‑613)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,365	C→T	8.6%	intergenic (+232/‑584)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	535,818	G→T	5.6%	E85* (GAA→TAA) ‡	rplA →	50S ribosomal protein L1
RA	535,819	A→C	5.6%	E85A (GAA→GCA) ‡	rplA →	50S ribosomal protein L1
RA	536,422	T→G	5.5%	noncoding (36/190 nt)	PP_mr06 ←	P27 ncRNA
RA	536,428	A→G	5.5%	noncoding (30/190 nt)	PP_mr06 ←	P27 ncRNA
RA	537,572	G→T	8.1%	intergenic (+102/‑51)	PP_mr07 → / → rpoB	P26 ncRNA/DNA‑directed RNA polymerase subunit beta
RA	537,579	C→G	9.6%	intergenic (+109/‑44)	PP_mr07 → / → rpoB	P26 ncRNA/DNA‑directed RNA polymerase subunit beta
RA	537,586	A→C	6.8%	intergenic (+116/‑37)	PP_mr07 → / → rpoB	P26 ncRNA/DNA‑directed RNA polymerase subunit beta
RA	543,727	A→G	6.7%	N656S (AAC→AGC)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	543,730	C→T	6.5%	A657V (GCT→GTT)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	550,549	C→G	7.2%	intergenic (+30/‑112)	tufB → / → rpsJ	elongation factor Tu‑B/30S ribosomal protein S10
RA	554,152:1	+C	5.8%	coding (92/714 nt)	rpsC →	30S ribosomal protein S3
RA	554,157	Δ1 bp	5.4%	coding (97/714 nt)	rpsC →	30S ribosomal protein S3
RA	562,609	C→A	7.5%	S112Y (TCC→TAC)	rpsD →	30S ribosomal protein S4
RA	564,377:1	+A	10.8%	intergenic (+29/‑144)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,382	Δ1 bp	11.4%	intergenic (+34/‑139)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,393	T→C	7.1%	intergenic (+45/‑128)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	565,986	T→A	9.8%	intergenic (+26/‑138)	katA → / → bfr‑I	catalase/bacterioferritin
RA	565,987	C→A	8.5%	intergenic (+27/‑137)	katA → / → bfr‑I	catalase/bacterioferritin
RA	565,990	T→G	8.5%	intergenic (+30/‑134)	katA → / → bfr‑I	catalase/bacterioferritin
RA	565,991	T→A	8.4%	intergenic (+31/‑133)	katA → / → bfr‑I	catalase/bacterioferritin
RA	566,620	C→T	7.3%	intergenic (+32/+41)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,624	A→G	7.0%	intergenic (+36/+37)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,625	T→A	6.7%	intergenic (+37/+36)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,626	C→T	6.6%	intergenic (+38/+35)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,630	A→G	6.6%	intergenic (+42/+31)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	587,076	C→G	7.9%	P43R (CCG→CGG)	PP_0497 →	Cro/CI family transcriptional regulator
RA	605,369	G→A	7.0%	G228S (GGC→AGC)	thiL →	thiamin monophosphate kinase
RA	605,374	G→C	5.8%	V229V (GTG→GTC)	thiL →	thiamin monophosphate kinase
RA	623,513	G→A	8.5%	H56H (CAC→CAT)	PP_0536 ←	hypothetical protein
RA	623,517	C→A	8.6%	R55L (CGG→CTG)	PP_0536 ←	hypothetical protein
RA	623,519	C→A	10.0%	E54D (GAG→GAT) ‡	PP_0536 ←	hypothetical protein
RA	623,520	T→G	8.4%	E54A (GAG→GCG) ‡	PP_0536 ←	hypothetical protein
RA	623,522	T→G	8.6%	A53A (GCA→GCC)	PP_0536 ←	hypothetical protein
RA	635,170	C→T	6.0%	L492L (CTC→CTT)	PP_0546 →	sigma‑54 dependent transcriptional regulator
RA	635,840	G→T	11.6%	E22* (GAA→TAA) ‡	mpl →	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
RA	635,841	A→T	11.2%	E22V (GAA→GTA) ‡	mpl →	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
RA	635,842	A→C	11.0%	E22D (GAA→GAC) ‡	mpl →	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
RA	640,261	T→C	8.2%	I162V (ATC→GTC)	PP_0551 ←	MORN domain‑containing protein
RA	640,263	A→T	8.2%	L161Q (CTG→CAG)	PP_0551 ←	MORN domain‑containing protein
RA	640,265	G→A	8.3%	D160D (GAC→GAT)	PP_0551 ←	MORN domain‑containing protein
RA	646,272	T→A	6.6%	intergenic (‑178/‑106)	PP_0556 ← / → acoR	acetoin catabolism protein/acetoin catabolism regulatory protein
RA	648,287	A→C	9.7%	intergenic (+56/+35)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	672,892	T→A	7.5%	I210F (ATC→TTC)	PP_0574 ←	LuxR family transcriptional regulator
RA	685,326	G→T	6.3%	R307R (CGC→CGA) ‡	cadA‑II ←	cadmium translocating P‑type ATPase
RA	685,327	C→T	6.3%	R307H (CGC→CAC) ‡	cadA‑II ←	cadmium translocating P‑type ATPase
RA	685,330	A→G	6.3%	L306S (TTG→TCG) ‡	cadA‑II ←	cadmium translocating P‑type ATPase
RA	685,331	A→C	6.3%	L306V (TTG→GTG) ‡	cadA‑II ←	cadmium translocating P‑type ATPase
RA	697,214	T→C	6.7%	intergenic (+141/‑610)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,225	C→G	9.1%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	9.5%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	698,371	C→T	20.0%	noncoding (548/1522 nt)	PP_16SD →	16S ribosomal RNA
RA	699,722	A→G	48.2%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,764	T→G	8.9%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,765	A→T	8.9%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,766	C→A	11.0%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	710,379	T→C	8.0%	Y59Y (TAT→TAC)	ileS →	isoleucine‑‑tRNA ligase
RA	727,315	C→T	11.9%	W6* (TGG→TAG) ‡	PP_0621 ←	hypothetical protein
RA	727,316	A→T	11.4%	W6R (TGG→AGG) ‡	PP_0621 ←	hypothetical protein
RA	727,317	A→G	11.7%	P5P (CCT→CCC)	PP_0621 ←	hypothetical protein
RA	766,609	A→T	8.7%	Q34L (CAG→CTG)	metB →	cystathionine gamma‑synthase
RA	766,621	T→G	8.8%	V38G (GTG→GGG)	metB →	cystathionine gamma‑synthase
RA	779,919	A→C	6.2%	G184G (GGT→GGG)	PP_0670 ←	bile acid/Na+ symporter family transporter
RA	782,063	A→T	9.4%	intergenic (‑218/+32)	glyA‑II ← / ← PP_0672	serine hydroxymethyltransferase/sensory box protein
RA	782,064	A→T	9.4%	intergenic (‑219/+31)	glyA‑II ← / ← PP_0672	serine hydroxymethyltransferase/sensory box protein
RA	787,188	C→G	7.9%	A102A (GCC→GCG)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	787,189	C→G	7.8%	R103G (CGC→GGC)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	787,407	C→A	7.5%	R175R (CGC→CGA)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	787,409	T→A	7.3%	L176Q (CTG→CAG)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	787,412	T→A	7.3%	L177Q (CTG→CAG)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	787,415	T→A	7.3%	L178Q (CTG→CAG)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	787,417	T→G	8.9%	S179A (TCG→GCG)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	788,581	C→A	8.1%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,583	A→T	7.9%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,584	A→T	7.9%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	T→G	7.4%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,596	T→C	7.4%	intergenic (+46/‑167)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	790,611	Δ1 bp	6.6%	coding (59/498 nt)	PP_0676 ←	transcription elongation factor
RA	790,616:1	+A	6.4%	coding (54/498 nt)	PP_0676 ←	transcription elongation factor
RA	790,620	T→C	6.6%	Q17R (CAG→CGG)	PP_0676 ←	transcription elongation factor
RA	790,629	Δ1 bp	6.8%	coding (41/498 nt)	PP_0676 ←	transcription elongation factor
RA	790,634:1	+A	7.0%	coding (36/498 nt)	PP_0676 ←	transcription elongation factor
RA	798,663	C→G	9.1%	intergenic (+18/+9)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	798,664	T→G	10.1%	intergenic (+19/+8)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	828,921	C→G	6.4%	T178S (ACT→AGT)	kefB‑I →	CPA2 family Kef‑type potassium/proton antiporter
RA	832,299	T→C	6.5%	L21P (CTG→CCG)	PP_0716 →	HlyD family secretion protein
RA	837,926	G→T	6.3%	P13P (CCC→CCA)	pth ←	peptidyl‑tRNA hydrolase
RA	837,931	T→A	6.2%	N12Y (AAC→TAC)	pth ←	peptidyl‑tRNA hydrolase
RA	837,936	A→C	6.0%	L10R (CTG→CGG)	pth ←	peptidyl‑tRNA hydrolase
RA	838,003	Δ1 bp	7.7%	intergenic (‑39/+41)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	838,007:1	+C	7.7%	intergenic (‑43/+37)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	846,580	C→T	8.1%	G207D (GGC→GAC)	PP_0729 ←	hypothetical protein
RA	846,736	G→C	6.1%	T155S (ACT→AGT)	PP_0729 ←	hypothetical protein
RA	853,762	G→A	9.6%	R62H (CGT→CAT) ‡	prmC →	release factor‑(glutamine‑N5) methyltransferase
RA	853,763	T→C	9.6%	R62R (CGT→CGC) ‡	prmC →	release factor‑(glutamine‑N5) methyltransferase
RA	855,668	G→A	10.4%	P173P (CCG→CCA)	murI →	glutamate racemase
RA	855,669	C→G	10.3%	L174V (CTA→GTA)	murI →	glutamate racemase
RA	855,672	C→G	10.4%	L175V (CTG→GTG) ‡	murI →	glutamate racemase
RA	855,673	T→C	10.4%	L175P (CTG→CCG) ‡	murI →	glutamate racemase
RA	874,538	C→T	9.5%	V39V (GTC→GTT)	PP_0759 →	hypothetical protein
RA	874,539	G→C	9.6%	E40Q (GAA→CAA) ‡	PP_0759 →	hypothetical protein
RA	874,540	A→G	9.2%	E40G (GAA→GGA) ‡	PP_0759 →	hypothetical protein
RA	895,216	G→A	8.4%	intergenic (+56/+8)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	900,534	C→A	11.8%	intergenic (+26/+19)	PP_0784 → / ← cysZ	hypothetical protein/sulfate transport protein CysZ
RA	900,535	C→G	13.5%	intergenic (+27/+18)	PP_0784 → / ← cysZ	hypothetical protein/sulfate transport protein CysZ
RA	900,536	T→G	11.8%	intergenic (+28/+17)	PP_0784 → / ← cysZ	hypothetical protein/sulfate transport protein CysZ
RA	902,618	C→G	9.1%	intergenic (+44/+32)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,619	A→C	9.1%	intergenic (+45/+31)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,620	A→T	8.7%	intergenic (+46/+30)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,621	G→T	9.1%	intergenic (+47/+29)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,622	C→G	10.8%	intergenic (+48/+28)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	905,473	G→T	6.2%	E578* (GAA→TAA) ‡	PP_0788 →	hypothetical protein
RA	905,474	A→T	5.3%	E578V (GAA→GTA) ‡	PP_0788 →	hypothetical protein
RA	905,475	A→C	5.3%	E578D (GAA→GAC) ‡	PP_0788 →	hypothetical protein
RA	922,757	G→C	7.7%	Q91E (CAG→GAG)	PP_0803 ←	protein secretion ABC transporter permease
RA	922,773	G→C	6.7%	R85R (CGC→CGG)	PP_0803 ←	protein secretion ABC transporter permease
RA	926,157	G→A	8.5%	R157W (CGG→TGG)	PP_0805 ←	outer membrane efflux protein
RA	955,149	A→G	26.6%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,151	G→A	27.6%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	T→A	26.7%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,153	T→C	26.7%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	C→T	27.6%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	956,583	G→T	9.6%	intergenic (+16/‑98)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	956,584	A→T	8.0%	intergenic (+17/‑97)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	956,585	A→C	8.0%	intergenic (+18/‑96)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	979,599	A→T	6.6%	H350L (CAC→CTC)	iscS‑I →	cysteine desulfurase
RA	980,631:1	+G	6.2%	coding (73/522 nt)	hscB →	DnaJ‑like molecular chaperone
RA	980,637	T→G	5.5%	Y27D (TAT→GAT)	hscB →	DnaJ‑like molecular chaperone
RA	980,640	C→A	5.4%	R28S (CGC→AGC)	hscB →	DnaJ‑like molecular chaperone
RA	983,256	T→C	8.9%	V89V (GTT→GTC)	fdx →	ferredoxin
RA	983,263	G→A	10.0%	A92T (GCT→ACT) ‡	fdx →	ferredoxin
RA	983,264	C→G	9.8%	A92G (GCT→GGT) ‡	fdx →	ferredoxin
RA	983,265	T→C	10.0%	A92A (GCT→GCC) ‡	fdx →	ferredoxin
RA	994,960	G→A	9.1%	intergenic (+39/+86)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	1,004,526	A→T	6.7%	Q184L (CAG→CTG)	PP_0866 →	transmembrane sensor
RA	1,013,228	A→T	13.9%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,234	C→A	16.1%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,235	A→T	16.2%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,241	G→C	19.0%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	19.4%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	18.2%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	20.0%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,255	A→T	19.4%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,757	T→A	6.1%	Y209F (TAC→TTC)	potF‑I ←	putrescine‑binding protein
RA	1,013,761	G→T	6.1%	P208T (CCT→ACT)	potF‑I ←	putrescine‑binding protein
RA	1,013,762	C→G	6.1%	R207R (CGG→CGC)	potF‑I ←	putrescine‑binding protein
RA	1,013,765	C→G	6.1%	V206V (GTG→GTC) ‡	potF‑I ←	putrescine‑binding protein
RA	1,013,766	A→C	6.1%	V206G (GTG→GGG) ‡	potF‑I ←	putrescine‑binding protein
RA	1,038,222	C→A	7.4%	P391P (CCG→CCT)	PP_0897 ←	class 1 fumarate hydratase
RA	1,038,225	G→C	7.5%	G390G (GGC→GGG)	PP_0897 ←	class 1 fumarate hydratase
RA	1,038,228	G→A	7.3%	A389A (GCC→GCT)	PP_0897 ←	class 1 fumarate hydratase
RA	1,038,231	T→C	7.3%	P388P (CCA→CCG)	PP_0897 ←	class 1 fumarate hydratase
RA	1,038,234	G→C	7.6%	G387G (GGC→GGG)	PP_0897 ←	class 1 fumarate hydratase
RA	1,038,237	T→G	7.7%	V386V (GTA→GTC)	PP_0897 ←	class 1 fumarate hydratase
RA	1,060,344	C→T	9.1%	R164C (CGC→TGC)	iciA →	chromosome initiation inhibitor
RA	1,070,246:1	+GA	100%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,075,486	C→G	7.3%	I68M (ATC→ATG)	mreB →	cell wall structural actin‑like protein MreB
RA	1,075,487	C→G	7.2%	R69G (CGT→GGT)	mreB →	cell wall structural actin‑like protein MreB
RA	1,075,492	C→G	7.3%	T70T (ACC→ACG)	mreB →	cell wall structural actin‑like protein MreB
RA	1,104,167	T→A	6.6%	M309K (ATG→AAG)	murA →	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	1,125,242	G→A	7.4%	T435T (ACC→ACT) ‡	tdcG‑II ←	L‑serine dehydratase
RA	1,125,244	T→A	7.3%	T435S (ACC→TCC) ‡	tdcG‑II ←	L‑serine dehydratase
RA	1,125,246	T→C	7.5%	Q434R (CAG→CGG)	tdcG‑II ←	L‑serine dehydratase
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,133,521	A→G	8.0%	A36A (GCA→GCG)	PP_0995 →	membrane protein
RA	1,178,886	T→G	6.1%	Q631P (CAA→CCA)	PP_1033 ←	sulfatase domain‑containing protein
RA	1,178,888	G→A	6.2%	P630P (CCC→CCT)	PP_1033 ←	sulfatase domain‑containing protein
RA	1,220,940	T→G	10.6%	E122D (GAA→GAC) ‡	dctD‑II ←	C4‑dicarboxylate transport transcriptional regulator
RA	1,220,941	T→A	10.6%	E122V (GAA→GTA) ‡	dctD‑II ←	C4‑dicarboxylate transport transcriptional regulator
RA	1,220,942	C→A	12.5%	E122* (GAA→TAA) ‡	dctD‑II ←	C4‑dicarboxylate transport transcriptional regulator
RA	1,229,334	T→G	6.0%	R838R (CGT→CGG)	PP_1072 →	leucine‑rich repeat‑containing protein
RA	1,241,527	A→G	8.9%	intergenic (+19/‑73)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,241,529	G→C	9.2%	intergenic (+21/‑71)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,241,531	C→T	9.3%	intergenic (+23/‑69)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,254,662	C→A	6.7%	W280L (TGG→TTG)	metG ←	methionine‑‑tRNA ligase
RA	1,255,335	A→G	8.5%	S56P (TCG→CCG)	metG ←	methionine‑‑tRNA ligase
RA	1,256,307	C→T	8.6%	P217S (CCA→TCA)	mrp →	ATP‑dependent Fe‑S cluster transferase
RA	1,256,314	G→T	9.1%	G219V (GGT→GTT) ‡	mrp →	ATP‑dependent Fe‑S cluster transferase
RA	1,256,315	T→A	8.9%	G219G (GGT→GGA) ‡	mrp →	ATP‑dependent Fe‑S cluster transferase
RA	1,256,316	A→C	8.9%	T220P (ACC→CCC)	mrp →	ATP‑dependent Fe‑S cluster transferase
RA	1,270,077	C→T	7.7%	D155D (GAC→GAT)	PP_1110 →	serine acetyltransferase
RA	1,284,032	T→A	5.5%	intergenic (‑129/‑31)	PP_1120 ← / → PP_1121	hypothetical protein/OmpA family protein
RA	1,284,555	A→G	7.7%	S165G (AGC→GGC)	PP_1121 →	OmpA family protein
RA	1,292,213	A→T	5.2%	H335L (CAC→CTC)	estC →	carboxylesterase
RA	1,312,198	G→A	6.1%	P820L (CCA→CTA)	rapA ←	RNA polymerase‑associated protein RapA
RA	1,327,121	C→T	57.3%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,330,563	T→G	6.9%	intergenic (+94/‑213)	PP_5SE → / → PP_1157	5S ribosomal RNA/acetolactate synthase
RA	1,330,564	T→A	7.2%	intergenic (+95/‑212)	PP_5SE → / → PP_1157	5S ribosomal RNA/acetolactate synthase
RA	1,330,565	C→A	11.5%	intergenic (+96/‑211)	PP_5SE → / → PP_1157	5S ribosomal RNA/acetolactate synthase
RA	1,352,384	C→A	5.7%	intergenic (‑27/+113)	PP_1178 ← / ← nrdA	hypothetical protein/ribonucleoside‑diphosphate reductase subunit alpha
RA	1,356,405	G→C	10.2%	G94A (GGC→GCC)	PP_1181 →	two‑component system response regulator
RA	1,366,548	T→G	9.5%	E51A (GAG→GCG)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,551	A→T	9.1%	V50D (GTC→GAC)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,554	C→A	10.4%	R49L (CGC→CTC)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,654	C→T	7.0%	G16S (GGC→AGC)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,655	G→C	9.8%	L15L (CTC→CTG) ‡	PP_1191 ←	S4 domain‑containing protein
RA	1,366,656	A→G	8.9%	L15P (CTC→CCC) ‡	PP_1191 ←	S4 domain‑containing protein
RA	1,376,321	A→T	6.8%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,322	G→C	6.8%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,323	A→T	6.8%	intergenic (+32/+17)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,383,254	A→T	9.1%	L16Q (CTG→CAG)	PP_1204 ←	lipoprotein
RA	1,384,157	T→G	10.1%	I292L (ATT→CTT)	proS ←	proline‑‑tRNA ligase
RA	1,384,159	A→T	8.8%	L291Q (CTG→CAG)	proS ←	proline‑‑tRNA ligase
RA	1,384,161	C→A	8.7%	K290N (AAG→AAT)	proS ←	proline‑‑tRNA ligase
RA	1,400,872	C→A	9.1%	intergenic (+35/‑134)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,874	A→T	9.2%	intergenic (+37/‑132)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,876	T→G	8.3%	intergenic (+39/‑130)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,402,723	A→G	5.1%	L271P (CTG→CCG)	PP_1227 ←	membrane protein
RA	1,416,862	G→A	11.5%	R37Q (CGG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,868	T→A	10.4%	L39Q (CTG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,874	T→C	10.7%	L41P (CTG→CCG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,419,548:1	+C	41.2%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,435,815	A→T	8.2%	L50Q (CTG→CAG)	PP_1256 ←	alpha‑ketoglutarate semialdehyde dehydrogenase
RA	1,435,822	A→T	9.8%	C48S (TGC→AGC)	PP_1256 ←	alpha‑ketoglutarate semialdehyde dehydrogenase
RA	1,446,879	C→T	6.1%	A326V (GCC→GTC)	PP_1264 →	fusaric acid resistance protein
RA	1,451,024	C→T	46.4%	Q70* (CAG→TAG)	PP_1270 →	LysR family transcriptional regulator
RA	1,452,122	Δ1 bp	28.8%	coding (284/1542 nt)	PP_1271 →	putative Multidrug efflux MFS transporter
RA	1,452,781	C→T	7.7%	Q315* (CAG→TAG)	PP_1271 →	putative Multidrug efflux MFS transporter
RA	1,460,517	G→A	6.8%	A316A (GCC→GCT)	algJ ←	alginate O‑acetylase AlgJ
RA	1,496,815	T→G	6.1%	intergenic (+47/+25)	mdeA → / ← PP_1309	methionine gamma‑lyase/hypothetical protein
RA	1,496,816	T→C	6.0%	intergenic (+48/+24)	mdeA → / ← PP_1309	methionine gamma‑lyase/hypothetical protein
RA	1,496,817	G→A	5.9%	intergenic (+49/+23)	mdeA → / ← PP_1309	methionine gamma‑lyase/hypothetical protein
RA	1,496,818	C→A	5.8%	intergenic (+50/+22)	mdeA → / ← PP_1309	methionine gamma‑lyase/hypothetical protein
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,504,584	T→G	9.8%	S97A (TCC→GCC)	petA →	ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,587	A→T	10.9%	K98* (AAG→TAG) ‡	petA →	ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,588	A→T	9.5%	K98M (AAG→ATG) ‡	petA →	ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,591	C→A	9.5%	A99D (GCC→GAC)	petA →	ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,505,544	A→C	8.1%	D219A (GAC→GCC)	petB →	cytochrome b
RA	1,524,047	G→C	6.5%	A251P (GCT→CCT) ‡	murG →	UDP‑N‑acetylglucosamine‑‑N‑acetylmuramyl‑ (pentapeptide) pyrophosphoryl‑undecaprenol N‑acetylglucosamine transferase
RA	1,524,049	T→A	6.7%	A251A (GCT→GCA) ‡	murG →	UDP‑N‑acetylglucosamine‑‑N‑acetylmuramyl‑ (pentapeptide) pyrophosphoryl‑undecaprenol N‑acetylglucosamine transferase
RA	1,524,052	T→A	6.5%	Y252* (TAT→TAA)	murG →	UDP‑N‑acetylglucosamine‑‑N‑acetylmuramyl‑ (pentapeptide) pyrophosphoryl‑undecaprenol N‑acetylglucosamine transferase
RA	1,524,054	G→C	7.3%	G253A (GGC→GCC)	murG →	UDP‑N‑acetylglucosamine‑‑N‑acetylmuramyl‑ (pentapeptide) pyrophosphoryl‑undecaprenol N‑acetylglucosamine transferase
RA	1,529,153	T→C	5.8%	L59P (CTG→CCG)	ftsZ →	cell division protein FtsZ
RA	1,534,898	A→G	5.8%	intergenic (+89/‑94)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,902	G→A	5.8%	intergenic (+93/‑90)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,536,251	A→G	7.1%	intergenic (+42/‑114)	argJ → / → PP_1347	glutamate N‑acetyltransferase/amino acid acetyltransferase/glutathione S‑transferase family protein
RA	1,536,256	T→C	7.3%	intergenic (+47/‑109)	argJ → / → PP_1347	glutamate N‑acetyltransferase/amino acid acetyltransferase/glutathione S‑transferase family protein
RA	1,536,264	T→C	7.0%	intergenic (+55/‑101)	argJ → / → PP_1347	glutamate N‑acetyltransferase/amino acid acetyltransferase/glutathione S‑transferase family protein
RA	1,536,271	A→G	7.3%	intergenic (+62/‑94)	argJ → / → PP_1347	glutamate N‑acetyltransferase/amino acid acetyltransferase/glutathione S‑transferase family protein
RA	1,541,264	A→G	6.9%	I87I (ATT→ATC)	panE ←	2‑dehydropantoate 2‑reductase
RA	1,541,267	C→T	8.0%	A86A (GCG→GCA)	panE ←	2‑dehydropantoate 2‑reductase
RA	1,544,504	T→G	25.1%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,895	A→T	14.3%	I99F (ATC→TTC)	groL →	chaperonin GroEL
RA	1,549,900	C→T	14.5%	V100V (GTC→GTT)	groL →	chaperonin GroEL
RA	1,549,901	A→G	14.8%	N101D (AAC→GAC)	groL →	chaperonin GroEL
RA	1,549,906	A→T	14.2%	E102D (GAA→GAT)	groL →	chaperonin GroEL
RA	1,563,817	A→G	7.1%	intergenic (+83/+39)	PP_1372 → / ← pitB	hypothetical protein/phosphate transporter
RA	1,572,248	T→C	6.6%	L124L (TTG→CTG) ‡	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,572,249	T→A	6.7%	L124* (TTG→TAG) ‡	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,581,266	G→T	100%	A44D (GCC→GAC)	ttgB ←	efflux pump membrane protein TtgB
RA	1,584,487	A→T	8.6%	L176Q (CTG→CAG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,491	C→G	8.6%	G175R (GGG→CGG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,493	A→T	8.5%	L174Q (CTG→CAG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,495	C→G	6.8%	P173P (CCG→CCC)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,499	A→T	9.6%	L172Q (CTG→CAG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,585,219	G→A	10.0%	intergenic (‑206/‑170)	PP_1388 ← / → PP_1389	EmrB/QacA family drug resistance transporter/oxaloacetate decarboxylase
RA	1,585,220	G→C	9.8%	intergenic (‑207/‑169)	PP_1388 ← / → PP_1389	EmrB/QacA family drug resistance transporter/oxaloacetate decarboxylase
RA	1,585,221	T→C	10.0%	intergenic (‑208/‑168)	PP_1388 ← / → PP_1389	EmrB/QacA family drug resistance transporter/oxaloacetate decarboxylase
RA	1,591,965	G→C	8.1%	intergenic (‑72/‑131)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,982	C→A	13.3%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,987	T→G	13.4%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,594,484	A→C	7.3%	R313R (CGT→CGG)	kgtP ←	alpha‑ketoglutarate permease
RA	1,594,487	G→C	7.5%	R312R (CGC→CGG)	kgtP ←	alpha‑ketoglutarate permease
RA	1,594,490	G→T	7.5%	G311G (GGC→GGA)	kgtP ←	alpha‑ketoglutarate permease
RA	1,596,417	G→A	8.3%	A198A (GCC→GCT)	dctD‑III ←	C4‑dicarboxylate transport transcriptional regulator
RA	1,605,714	G→T	6.8%	H179Q (CAC→CAA)	PP_1407 ←	sulfate transporter
RA	1,614,877	A→C	5.4%	L292R (CTG→CGG)	PP_1415 ←	membrane protein
RA	1,620,347	G→C	7.8%	intergenic (‑113/‑88)	opdH ← / → tctD	tricarboxylate‑specific outer membrane porin/transcriptional regulator TctD
RA	1,620,348	C→G	7.8%	intergenic (‑114/‑87)	opdH ← / → tctD	tricarboxylate‑specific outer membrane porin/transcriptional regulator TctD
RA	1,620,349	G→C	8.8%	intergenic (‑115/‑86)	opdH ← / → tctD	tricarboxylate‑specific outer membrane porin/transcriptional regulator TctD
RA	1,629,453	G→T	7.3%	Q321H (CAG→CAT)	mucB →	sigma factor AlgU regulator MucB
RA	1,629,456	A→C	8.6%	*322Y (TAA→TAC)	mucB →	sigma factor AlgU regulator MucB
RA	1,633,552	C→G	7.8%	G167G (GGC→GGG)	lepB →	signal peptidase I
RA	1,633,556	C→G	8.1%	P169A (CCC→GCC)	lepB →	signal peptidase I
RA	1,637,325	A→T	16.0%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,326	A→T	16.0%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,336	G→A	10.3%	intergenic (+45/+21)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,342	A→G	7.6%	intergenic (+51/+15)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,344	C→T	7.8%	intergenic (+53/+13)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,271	G→C	5.9%	intergenic (‑99/+53)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,277	G→C	6.0%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,278	C→G	6.0%	intergenic (‑106/+46)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,279	G→C	6.0%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,285	G→C	7.4%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,644,703	T→C	11.1%	E13E (GAA→GAG)	lon‑I ←	DNA‑binding ATP‑dependent protease
RA	1,645,887	G→C	9.2%	S490R (AGC→AGG)	gcd ←	quinoprotein glucose dehydrogenase
RA	1,662,017	G→A	6.4%	A49T (GCA→ACA)	purT →	phosphoribosylglycinamide formyltransferase
RA	1,693,685	C→G	8.8%	P52A (CCT→GCT) ‡	PP_1489 →	CheW domain‑containing protein
RA	1,693,686	C→G	10.1%	P52R (CCT→CGT) ‡	PP_1489 →	CheW domain‑containing protein
RA	1,696,392	C→G	15.5%	S142C (TCC→TGC)	PP_1492 →	two‑component system sensor histidine kinase/response regulator
RA	1,698,372	G→A	7.5%	Q40Q (CAG→CAA)	cheBC →	chemotaxis response regulator protein‑glutamate methylesterase
RA	1,698,375	T→C	7.6%	R41R (CGT→CGC)	cheBC →	chemotaxis response regulator protein‑glutamate methylesterase
RA	1,703,248	A→G	14.6%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	15.6%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	18.1%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,712,951	T→A	7.3%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,952	T→A	6.2%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,719,614	A→G	6.9%	Y133H (TAC→CAC)	PP_1515 ←	Transcriptional regulator, tetR family
RA	1,735,476	C→A	6.0%	G350C (GGC→TGC)	csdA ←	cysteine desulfurase
RA	1,747,351	T→A	13.4%	E53V (GAG→GTG)	PP_5473 ←	LuxR family transcriptional regulator
RA	1,748,925	T→A	7.4%	intergenic (‑258/‑74)	PP_1548 ← / → PP_5744	hypothetical protein/hypothetical protein
RA	1,748,944	A→T	9.4%	intergenic (‑277/‑55)	PP_1548 ← / → PP_5744	hypothetical protein/hypothetical protein
RA	1,757,731	C→A	7.5%	L263I (CTA→ATA)	PP_1563 →	terminase large subunit
RA	1,784,031	C→G	6.6%	A16P (GCG→CCG)	glnD ←	uridylyltransferase
RA	1,784,032	C→G	9.4%	Q15H (CAG→CAC) ‡	glnD ←	uridylyltransferase
RA	1,784,033	T→C	6.6%	Q15R (CAG→CGG) ‡	glnD ←	uridylyltransferase
RA	1,786,944	A→G	5.5%	T259A (ACC→GCC)	tsf →	elongation factor Ts
RA	1,786,961	C→T	5.4%	G264G (GGC→GGT)	tsf →	elongation factor Ts
RA	1,790,528	A→G	11.5%	K153R (AAG→AGG)	dxr →	1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase
RA	1,803,852	C→A	100%	R69S (CGT→AGT)	accA →	acetyl‑CoA carboxylase carboxyltransferase subunit alpha
RA	1,808,075	G→A	7.8%	V42V (GTG→GTA)	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,808,080	T→A	9.1%	V44D (GTT→GAT)	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,808,088	A→C	13.3%	K47Q (AAG→CAG) ‡	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,808,089	A→T	12.7%	K47M (AAG→ATG) ‡	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,808,090	G→T	14.2%	K47N (AAG→AAT) ‡	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,808,098	T→A	7.4%	I50N (ATC→AAC)	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,810,335	T→G	13.4%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,810,336	C→A	16.1%	intergenic (+97/‑72)	eno → / → ftsB	enolase/cell division protein
RA	1,814,593	C→A	6.2%	intergenic (+93/‑20)	frmC → / → ispF	S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase/2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
RA	1,814,595	C→G	6.3%	intergenic (+95/‑18)	frmC → / → ispF	S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase/2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
RA	1,828,594	G→A	9.7%	R120H (CGC→CAC)	recX →	regulatory protein RecX
RA	1,835,637	A→G	9.2%	intergenic (‑79/+53)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,645	T→G	8.6%	intergenic (‑87/+45)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,646	T→C	8.6%	intergenic (‑88/+44)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,647	G→A	8.7%	intergenic (‑89/+43)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,648	C→A	8.8%	intergenic (‑90/+42)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,656	C→T	8.5%	intergenic (‑98/+34)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
MC JC	1,842,640	Δ36 bp	100%	coding (2119‑2154/2754 nt)	gacS ←	sensor protein GacS
RA	1,859,114	A→T	12.2%	intergenic (+34/+67)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,120	C→G	12.5%	intergenic (+40/+61)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,861,946	C→A	6.4%	D17Y (GAC→TAC)	purM ←	phosphoribosylformylglycinamidine cyclo‑ligase
RA	1,861,949	T→C	6.5%	I16V (ATC→GTC)	purM ←	phosphoribosylformylglycinamidine cyclo‑ligase
RA	1,861,953	T→G	6.3%	V14V (GTA→GTC)	purM ←	phosphoribosylformylglycinamidine cyclo‑ligase
RA	1,861,956	A→G	6.2%	G13G (GGT→GGC)	purM ←	phosphoribosylformylglycinamidine cyclo‑ligase
RA	1,899,333	C→A	5.5%	intergenic (+403/‑117)	PP_t18 → / → PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
RA	1,903,349	G→C	11.0%	M1300I (ATG→ATC)	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,926,513	T→G	9.9%	D118A (GAC→GCC) ‡	PP_1726 ←	ABC transporter substrate‑binding protein
RA	1,926,514	C→A	9.8%	D118Y (GAC→TAC) ‡	PP_1726 ←	ABC transporter substrate‑binding protein
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,933,669	G→C	6.7%	L29V (CTG→GTG)	minD ←	MinC‑MinD‑MinE system ATPase
RA	1,933,674	A→C	6.5%	L27R (CTC→CGC)	minD ←	MinC‑MinD‑MinE system ATPase
RA	1,939,121	G→T	7.4%	intergenic (‑66/‑113)	PP_1738 ← / → PP_1739	hypothetical protein/membrane protein
RA	1,948,173	C→G	12.9%	R494R (CGG→CGC)	PP_1749 ←	acetyltransferase
RA	1,955,209	T→A	8.5%	intergenic (+39/‑154)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,210	T→A	8.5%	intergenic (+40/‑153)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,993,602	G→T	7.1%	intergenic (+40/+58)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,603	C→G	7.0%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,604	A→C	7.0%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,995,504	T→A	7.3%	intergenic (‑756/+163)	PP_1781 ← / ← PP_mr26	acyltransferase/C4 ncRNA
RA	2,007,238	G→A	10.4%	L42L (CTG→TTG)	PP_1790 ←	acylneuraminate cytidylyltransferase
RA	2,007,239	T→C	10.7%	Q41Q (CAA→CAG)	PP_1790 ←	acylneuraminate cytidylyltransferase
RA	2,023,495	T→C	7.6%	F176S (TTC→TCC)	rmd →	oxidoreductase Rmd
RA	2,031,370	T→G	14.3%	intergenic (+43/+32)	PP_1806 → / ← kdsA‑II	arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	2,031,372	T→A	13.3%	intergenic (+45/+30)	PP_1806 → / ← kdsA‑II	arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	2,031,374	C→A	13.3%	intergenic (+47/+28)	PP_1806 → / ← kdsA‑II	arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	2,034,005	A→C	7.3%	K496Q (AAG→CAG) ‡	pgi‑I →	glucose 6‑phosphate isomerase
RA	2,034,007	G→T	8.5%	K496N (AAG→AAT) ‡	pgi‑I →	glucose 6‑phosphate isomerase
RA	2,034,011	T→C	6.9%	F498L (TTC→CTC)	pgi‑I →	glucose 6‑phosphate isomerase
RA	2,037,457	G→A	9.1%	intergenic (+51/+148)	PP_1810 → / ← PP_5478	hypothetical protein/hypothetical protein
RA	2,037,458	G→C	8.7%	intergenic (+52/+147)	PP_1810 → / ← PP_5478	hypothetical protein/hypothetical protein
RA	2,037,459	T→C	9.2%	intergenic (+53/+146)	PP_1810 → / ← PP_5478	hypothetical protein/hypothetical protein
RA	2,039,703	A→C	8.0%	P33P (CCT→CCG) ‡	PP_1812 ←	hypothetical protein
RA	2,039,704	G→T	8.0%	P33H (CCT→CAT) ‡	PP_1812 ←	hypothetical protein
RA	2,068,151	A→T	9.8%	intergenic (‑96/+25)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,068,152	A→T	9.8%	intergenic (‑97/+24)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,097,457	C→T	8.3%	P135L (CCG→CTG)	gpx →	hydroperoxy fatty acid reductase Gpx1
RA	2,097,463	G→C	8.5%	S137T (AGT→ACT)	gpx →	hydroperoxy fatty acid reductase Gpx1
RA	2,098,760	A→T	5.6%	I377N (ATT→AAT)	PP_1875 ←	two‑component system sensor histidine kinase/response regulator
RA	2,114,823	C→T	7.5%	R115W (CGG→TGG)	PP_1883 →	hypothetical protein
RA	2,125,440	G→A	9.1%	G271R (GGG→AGG)	PP_1887 →	hypothetical protein
RA	2,131,450	G→T	12.3%	T250K (ACG→AAG) ‡	fimD ←	type I pili subunit FimD
RA	2,131,451	T→G	11.8%	T250P (ACG→CCG) ‡	fimD ←	type I pili subunit FimD
RA	2,131,452	C→A	12.3%	L249L (CTG→CTT) ‡	fimD ←	type I pili subunit FimD
RA	2,131,453	A→C	12.0%	L249R (CTG→CGG) ‡	fimD ←	type I pili subunit FimD
RA	2,139,622	T→G	7.4%	Q167H (CAA→CAC)	PP_5481 ←	hypothetical protein
RA	2,139,628	A→T	7.7%	R165R (CGT→CGA)	PP_5481 ←	hypothetical protein
RA	2,157,393	G→A	7.3%	V233I (GTC→ATC)	fabD →	malonyl‑CoA‑ACP transacylase
RA	2,182,071	G→A	7.1%	intergenic (‑36/‑119)	PP_1935 ← / → PP_5487	Cro/CI family transcriptional regulator/hypothetical protein
RA	2,182,077	G→T	6.8%	intergenic (‑42/‑113)	PP_1935 ← / → PP_5487	Cro/CI family transcriptional regulator/hypothetical protein
RA	2,192,830	G→T	5.3%	R79L (CGG→CTG)	PP_1938 →	hypothetical protein
RA	2,211,904	C→T	7.9%	D12D (GAC→GAT)	PP_1955 →	cytochrome P450 family protein
RA	2,211,906	T→G	8.3%	F13C (TTC→TGC) ‡	PP_1955 →	cytochrome P450 family protein
RA	2,211,907	C→A	7.8%	F13L (TTC→TTA) ‡	PP_1955 →	cytochrome P450 family protein
RA	2,211,909	A→G	8.3%	N14S (AAT→AGT)	PP_1955 →	cytochrome P450 family protein
RA	2,215,345	G→A	6.4%	intergenic (+159/‑785)	PP_1957 → / → PP_5493	Pdr/VanB family oxidoreductase/hypothetical protein
RA	2,240,340	A→T	13.3%	D190V (GAC→GTC)	gltX →	glutamate‑‑tRNA ligase
RA	2,240,345	C→A	12.8%	L192M (CTG→ATG) ‡	gltX →	glutamate‑‑tRNA ligase
RA	2,240,346	T→G	12.2%	L192R (CTG→CGG) ‡	gltX →	glutamate‑‑tRNA ligase
RA	2,240,351	A→T	10.2%	T194S (ACG→TCG)	gltX →	glutamate‑‑tRNA ligase
RA	2,255,974	G→T	10.3%	intergenic (+34/‑670)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,255,975	T→C	10.5%	intergenic (+35/‑669)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,255,976	G→A	10.7%	intergenic (+36/‑668)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,255,977	A→C	10.5%	intergenic (+37/‑667)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,259,759	Δ1 bp	6.7%	coding (347/2736 nt)	fimV →	motility protein FimV
RA	2,263,570	T→C	5.2%	G121G (GGT→GGC)	trpF →	N‑(5'‑phosphoribosyl)anthranilate isomerase
RA	2,282,779	C→A	24.0%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,307,269	T→C	8.5%	K121E (AAG→GAG)	PP_2029 ←	von Willebrand factor type A domain‑containing protein
RA	2,307,274	A→T	8.7%	L119Q (CTG→CAG)	PP_2029 ←	von Willebrand factor type A domain‑containing protein
RA	2,313,687	A→T	7.8%	I134N (ATT→AAT)	benE‑I ←	benzoate transport protein
RA	2,318,912	T→G	6.7%	M385R (ATG→AGG)	PP_2039 →	acyl‑CoA dehydrogenase
RA	2,318,915	C→A	7.4%	P386H (CCT→CAT)	PP_2039 →	acyl‑CoA dehydrogenase
RA	2,326,104	T→G	7.3%	K400N (AAA→AAC)	PP_2045 ←	metallo‑beta‑lactamase family protein
RA	2,334,843	C→T	9.5%	Q538Q (CAG→CAA) ‡	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,334,844	T→G	8.9%	Q538P (CAG→CCG) ‡	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,334,847	C→T	9.3%	G537D (GGC→GAC)	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,334,850	A→G	9.4%	V536A (GTC→GCC)	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,334,853	C→A	9.1%	W535L (TGG→TTG) ‡	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,334,854	A→G	9.1%	W535R (TGG→CGG) ‡	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,340,333	C→T	8.1%	G325G (GGC→GGT)	dctA‑II →	C4‑dicarboxylate transport protein
RA	2,365,395	C→T	8.8%	G16D (GGC→GAC)	lysA‑I ←	diaminopimelate decarboxylase
RA	2,388,336	C→G	8.6%	intergenic (+73/+71)	pyrD → / ← rmf	dihydroorotate dehydrogenase/ribosome modulation factor
RA	2,396,271	A→T	5.6%	M1129K (ATG→AAG)	PP_2100 ←	two‑component system sensor protein
RA	2,396,295	A→T	5.1%	L1121H (CTT→CAT)	PP_2100 ←	two‑component system sensor protein
RA	2,398,162	G→T	7.7%	L499I (CTC→ATC)	PP_2100 ←	two‑component system sensor protein
RA	2,398,163	G→C	7.7%	I498M (ATC→ATG)	PP_2100 ←	two‑component system sensor protein
RA	2,402,311	A→T	7.5%	L19Q (CTG→CAG)	PP_2103 ←	hypothetical protein
RA	2,403,310	T→A	9.4%	intergenic (‑249/‑64)	PP_2105 ← / → PP_2106	hypothetical protein/ammonium transporter
RA	2,407,191	G→A	9.5%	D458D (GAC→GAT)	PP_2111 ←	aerotaxis receptor
RA	2,414,785	A→G	14.8%	intergenic (+327/‑18)	PP_2114 → / → PP_2115	transposase/hypothetical protein
RA	2,416,554	A→T	5.9%	intergenic (+87/+28)	pdxB → / ← PP_2118	erythronate‑4‑phosphate dehydrogenase/hypothetical protein
RA	2,416,555	A→T	5.9%	intergenic (+88/+27)	pdxB → / ← PP_2118	erythronate‑4‑phosphate dehydrogenase/hypothetical protein
RA	2,418,816	T→C	11.5%	intergenic (+87/‑34)	PP_2119 → / → ctpH	ABC transporter permease/ATP‑binding protein/methyl‑accepting chemotaxis protein CtpH
RA	2,418,817	G→A	11.5%	intergenic (+88/‑33)	PP_2119 → / → ctpH	ABC transporter permease/ATP‑binding protein/methyl‑accepting chemotaxis protein CtpH
RA	2,418,820	T→C	11.7%	intergenic (+91/‑30)	PP_2119 → / → ctpH	ABC transporter permease/ATP‑binding protein/methyl‑accepting chemotaxis protein CtpH
RA	2,418,821	G→A	11.7%	intergenic (+92/‑29)	PP_2119 → / → ctpH	ABC transporter permease/ATP‑binding protein/methyl‑accepting chemotaxis protein CtpH
RA	2,420,598	Δ1 bp	13.0%	intergenic (+81/+26)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,420,602:1	+T	12.7%	intergenic (+85/+22)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,437,556	T→A	5.2%	I159N (ATC→AAC)	fadB →	enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
RA	2,443,500	T→A	10.9%	F6I (TTT→ATT) ‡	PP_2140 →	hypothetical protein
RA	2,443,501	T→A	10.9%	F6Y (TTT→TAT) ‡	PP_2140 →	hypothetical protein
RA	2,443,502	T→A	10.9%	F6L (TTT→TTA) ‡	PP_2140 →	hypothetical protein
RA	2,444,415	A→C	14.5%	*159G (TGA→GGA)	sulA ←	cell division inhibitor SulA
RA	2,444,419	G→T	13.2%	L157L (CTC→CTA) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,420	A→C	13.2%	L157R (CTC→CGC) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,424	G→T	13.2%	R156S (CGC→AGC)	sulA ←	cell division inhibitor SulA
RA	2,453,596	G→A	14.7%	A508V (GCC→GTC)	mfd ←	transcription‑repair coupling factor
RA	2,453,602	T→A	12.5%	Q506L (CAG→CTG)	mfd ←	transcription‑repair coupling factor
RA	2,453,608	T→C	10.0%	D504G (GAC→GGC)	mfd ←	transcription‑repair coupling factor
RA	2,453,612	T→A	10.5%	I503F (ATC→TTC)	mfd ←	transcription‑repair coupling factor
RA	2,488,197	G→C	10.5%	intergenic (+53/‑349)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,488,203	G→A	10.0%	intergenic (+59/‑343)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,488,204	T→G	11.5%	intergenic (+60/‑342)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,488,205	C→A	9.4%	intergenic (+61/‑341)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,488,206	T→C	9.8%	intergenic (+62/‑340)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,488,212	G→C	9.7%	intergenic (+68/‑334)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,498,215	A→G	7.0%	H39R (CAC→CGC)	PP_2193 →	ferric siderophore receptor
RA	2,508,777	G→A	16.1%	S113L (TCG→TTG) ‡	PP_2203 ←	hypothetical protein
RA	2,508,778	A→T	14.9%	S113T (TCG→ACG) ‡	PP_2203 ←	hypothetical protein
RA	2,508,789	A→T	17.3%	M109K (ATG→AAG) ‡	PP_2203 ←	hypothetical protein
RA	2,508,790	T→C	13.6%	M109V (ATG→GTG) ‡	PP_2203 ←	hypothetical protein
RA	2,511,675	G→A	6.5%	T19M (ACG→ATG) ‡	copA‑I ←	copper resistance protein A
RA	2,511,676	T→C	6.3%	T19A (ACG→GCG) ‡	copA‑I ←	copper resistance protein A
RA	2,559,448	G→A	7.3%	D570N (GAT→AAT) ‡	fepA →	ferric enterobactin transport system outer membrane subunit
RA	2,559,449	A→T	6.9%	D570V (GAT→GTT) ‡	fepA →	ferric enterobactin transport system outer membrane subunit
RA	2,559,450	T→C	7.1%	D570D (GAT→GAC) ‡	fepA →	ferric enterobactin transport system outer membrane subunit
RA	2,574,852	A→C	6.6%	D10A (GAC→GCC)	PP_2258 →	sensory box protein
RA	2,578,982	T→C	8.5%	L131P (CTG→CCG)	PP_2260 →	glycerol‑phosphate ABC transporter ATP‑binding protein
RA	2,578,987	C→A	8.7%	L133I (CTC→ATC) ‡	PP_2260 →	glycerol‑phosphate ABC transporter ATP‑binding protein
RA	2,578,988	T→G	9.3%	L133R (CTC→CGC) ‡	PP_2260 →	glycerol‑phosphate ABC transporter ATP‑binding protein
RA	2,578,993	G→A	10.4%	G135S (GGT→AGT)	PP_2260 →	glycerol‑phosphate ABC transporter ATP‑binding protein
RA	2,631,141	C→G	9.5%	L202L (CTC→CTG)	lon‑II →	DNA‑binding ATP‑dependent protease
RA	2,631,143	T→A	9.3%	L203Q (CTG→CAG)	lon‑II →	DNA‑binding ATP‑dependent protease
RA	2,631,145	C→G	9.3%	Q204E (CAG→GAG)	lon‑II →	DNA‑binding ATP‑dependent protease
RA	2,650,160	A→T	6.3%	intergenic (+99/+35)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,650,161	A→T	5.7%	intergenic (+100/+34)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,651,276	G→C	9.1%	intergenic (+41/+29)	PP_2323 → / ← aroF‑I	hypothetical protein/tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
RA	2,703,038	G→A	8.1%	L65L (TTG→TTA)	PP_2369 →	leucine‑rich repeat‑containing protein
RA	2,707,047	G→T	8.9%	intergenic (+16/+31)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,707,048	A→C	7.4%	intergenic (+17/+30)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,707,049	G→T	8.3%	intergenic (+18/+29)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,707,050	A→C	8.7%	intergenic (+19/+28)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,710,914	A→G	6.8%	intergenic (+217/+97)	PP_2373 → / ← PP_2374	hypothetical protein/hypothetical protein
RA	2,710,986	T→G	6.9%	intergenic (+289/+25)	PP_2373 → / ← PP_2374	hypothetical protein/hypothetical protein
RA	2,710,987	C→A	6.9%	intergenic (+290/+24)	PP_2373 → / ← PP_2374	hypothetical protein/hypothetical protein
RA	2,724,160	C→T	9.5%	L144L (CTG→CTA)	azlC ←	branched‑chain amino acid transport protein AzlC
RA	2,783,187	Δ1 bp	8.5%	coding (236/927 nt)	PP_2436 ←	LysR family transcriptional regulator
RA	2,783,192	C→T	8.5%	L77L (CTG→CTA) ‡	PP_2436 ←	LysR family transcriptional regulator
RA	2,783,193	A→G	8.5%	L77P (CTG→CCG) ‡	PP_2436 ←	LysR family transcriptional regulator
RA	2,783,197:1	+T	8.5%	coding (226/927 nt)	PP_2436 ←	LysR family transcriptional regulator
RA	2,793,752	G→T	17.9%	intergenic (+61/+66)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,755	A→C	19.0%	intergenic (+64/+63)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,756	C→A	14.2%	intergenic (+65/+62)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,757	T→G	14.9%	intergenic (+66/+61)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,758	G→T	14.9%	intergenic (+67/+60)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,761	A→C	14.5%	intergenic (+70/+57)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,799,177	C→T	6.9%	intergenic (‑191/+25)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,180	A→G	5.6%	intergenic (‑194/+22)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,186	C→T	7.4%	intergenic (‑200/+16)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,803,922	G→T	6.4%	L245L (CTG→CTT)	rbsC →	D‑ribose ABC transporter permease
RA	2,803,923	G→C	6.5%	E246Q (GAA→CAA) ‡	rbsC →	D‑ribose ABC transporter permease
RA	2,803,924	A→C	6.6%	E246A (GAA→GCA) ‡	rbsC →	D‑ribose ABC transporter permease
RA	2,812,775	C→T	13.5%	intergenic (+69/‑41)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,812,778	C→G	13.2%	intergenic (+72/‑38)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,812,781	A→G	13.7%	intergenic (+75/‑35)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,824,259	T→A	6.4%	L112Q (CTG→CAG)	iorA‑I →	isoquinoline 1‑oxidoreductase subunit alpha
RA	2,828,849	A→C	12.5%	D342A (GAC→GCC)	PP_2480 →	xanthine dehydrogenase accessory factor
RA	2,862,973	A→T	9.7%	Q11H (CAA→CAT)	gllR →	HTH‑type transcriptional regulator GalR
RA	2,873,647	G→A	8.0%	V143M (GTG→ATG)	cigR →	membrane protein
RA	2,902,772	C→T	6.0%	R618R (CGC→CGT)	quiC →	3‑dehydroshikimate dehydratase
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,926,256	G→A	7.3%	A87V (GCC→GTC)	PP_2564 ←	quercetin 2,3‑dioxygenase
RA	2,929,212	T→C	8.3%	*1630W (TGA→TGG)	PP_2566 ←	leucine‑rich repeat‑containing protein
RA	2,951,334	G→C	13.2%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,341	A→C	12.4%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	12.5%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	12.4%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	3,000,764	G→T	7.4%	P78T (CCG→ACG)	PP_2624 ←	hypothetical protein
RA	3,000,765	T→G	7.4%	V77V (GTA→GTC)	PP_2624 ←	hypothetical protein
RA	3,000,768	C→G	7.7%	T76T (ACG→ACC)	PP_2624 ←	hypothetical protein
RA	3,000,772	A→C	7.3%	V75G (GTG→GGG)	PP_2624 ←	hypothetical protein
RA	3,006,468	T→G	10.4%	F1017V (TTC→GTC)	PP_2627 →	membrane protein
RA	3,006,473	G→T	10.2%	L1018L (CTG→CTT)	PP_2627 →	membrane protein
RA	3,006,474	A→C	10.6%	K1019Q (AAG→CAG)	PP_2627 →	membrane protein
RA	3,006,479	C→A	10.0%	D1020E (GAC→GAA)	PP_2627 →	membrane protein
RA	3,018,668	G→A	8.0%	G102G (GGG→GGA)	bcsZ →	cellulose synthase endo‑1,4‑D‑glucanase subunit
RA	3,026,917	C→A	7.4%	S94S (TCC→TCA)	PP_2642 →	GntR family transcriptional regulator
RA	3,029,214	G→C	12.3%	L289F (TTG→TTC)	pcaY →	aromatic acid chemoreceptor
RA	3,031,082	A→T	7.5%	K130M (AAG→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,031,089	C→G	8.3%	I132M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,031,092	C→G	8.3%	I133M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,031,095	C→G	8.3%	I134M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,031,102	A→T	8.3%	M137L (ATG→TTG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,048,605	A→C	10.0%	intergenic (+60/‑236)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,076,092	A→G	10.8%	intergenic (‑40/+34)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,076,094	T→G	13.1%	intergenic (‑42/+32)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,076,095	C→A	11.4%	intergenic (‑43/+31)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,076,097	C→T	11.2%	intergenic (‑45/+29)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,089,887	T→G	11.1%	K109T (AAA→ACA)	metE ←	5‑methyltetrahydropteroyltriglutamate‑ homocysteine methyltransferase
RA	3,116,175	G→A	9.5%	G305S (GGC→AGC)	PP_2732 →	hypothetical protein
RA	3,120,936	T→A	10.9%	I170F (ATC→TTC)	PP_2737 ←	short‑chain dehydrogenase/reductase family oxidoreductase
RA	3,120,938	C→G	10.9%	G169A (GGC→GCC)	PP_2737 ←	short‑chain dehydrogenase/reductase family oxidoreductase
RA	3,120,940	T→A	12.8%	E168D (GAA→GAT)	PP_2737 ←	short‑chain dehydrogenase/reductase family oxidoreductase
RA	3,138,707	G→C	7.0%	A282A (GCG→GCC)	PP_2754 →	OprD family outer membrane porin
RA	3,145,324	C→A	7.5%	A244A (GCC→GCA)	PP_2760 →	ribose ABC transporter permease
RA	3,162,524	T→C	8.7%	intergenic (+471/‑109)	PP_2776 → / → PP_2777	homocysteine S‑methyltransferase family protein/acyl carrier protein
RA	3,162,527	G→A	9.1%	intergenic (+474/‑106)	PP_2776 → / → PP_2777	homocysteine S‑methyltransferase family protein/acyl carrier protein
RA	3,162,568	C→T	9.9%	intergenic (+515/‑65)	PP_2776 → / → PP_2777	homocysteine S‑methyltransferase family protein/acyl carrier protein
RA	3,189,278	G→C	10.0%	L458V (CTG→GTG)	PP_2799 ←	class III aminotransferase
RA	3,189,279	G→C	11.6%	H457Q (CAC→CAG)	PP_2799 ←	class III aminotransferase
RA	3,195,578	Δ1 bp	11.1%	coding (489/1185 nt)	dhaT ←	1,3‑propanediol dehydrogenase
RA	3,199,401	Δ1 bp	9.6%	coding (114/582 nt)	PP_2806 ←	TetR family transcriptional regulator
RA	3,199,407	C→G	8.8%	A36A (GCG→GCC)	PP_2806 ←	TetR family transcriptional regulator
RA	3,199,412:1	+A	7.8%	coding (103/582 nt)	PP_2806 ←	TetR family transcriptional regulator
RA	3,224,350	G→A	11.1%	R41C (CGC→TGC)	PP_2825 ←	integrase
RA	3,227,794	C→G	7.4%	S211R (AGC→AGG)	PP_2828 →	hypothetical protein
RA	3,246,443	A→T	9.3%	Q233L (CAG→CTG)	PP_2841 →	site‑specific recombinase
RA	3,295,912	G→A	7.5%	L74L (CTG→TTG)	PP_2896 ←	hypothetical protein
RA	3,300,854	G→A	5.9%	S18F (TCC→TTC)	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,300,859	A→T	6.0%	D16E (GAT→GAA)	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,332,880	C→A	9.5%	L75L (CTG→CTT)	PP_2930 ←	L‑serine dehydratase
RA	3,336,360	A→G	7.7%	L79P (CTG→CCG)	yghU ←	GSH‑dependent disulfide bond oxidoreductase
RA	3,345,487	T→C	9.5%	Q338R (CAG→CGG)	PP_2942 ←	two‑component system response regulator
RA	3,372,120	T→C	10.8%	intergenic (‑48/‑71)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,372,121	G→C	11.1%	intergenic (‑49/‑70)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,372,122	G→A	11.1%	intergenic (‑50/‑69)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,378,669	A→G	7.1%	M21T (ATG→ACG)	PP_2979 ←	hypothetical protein
RA	3,380,705	T→C	8.9%	L126P (CTT→CCT)	tnpT‑I →	cointegrate resolution protein T
RA	3,380,707	C→G	8.8%	Q127E (CAG→GAG) ‡	tnpT‑I →	cointegrate resolution protein T
RA	3,380,709	G→A	9.1%	Q127Q (CAG→CAA) ‡	tnpT‑I →	cointegrate resolution protein T
RA	3,403,814	A→G	5.6%	S78G (AGC→GGC)	PP_3014 →	hypothetical protein
RA	3,411,782	A→G	10.2%	K99R (AAG→AGG)	PP_5551 →	hypothetical protein
RA	3,418,519	G→A	9.5%	intergenic (‑108/+51)	prtN ← / ← PP_3032	transcriptional regulator PrtN/DNA‑binding protein Roi‑like protein
RA	3,418,522	T→C	9.6%	intergenic (‑111/+48)	prtN ← / ← PP_3032	transcriptional regulator PrtN/DNA‑binding protein Roi‑like protein
RA	3,435,922	G→A	10.6%	Q278Q (CAG→CAA)	gpJ →	baseplate/tail fiber protein
RA	3,435,923	T→C	10.6%	L279L (TTG→CTG)	gpJ →	baseplate/tail fiber protein
RA	3,443,932	T→C	8.9%	R897R (CGT→CGC)	PP_3062 →	tail length determination protein
RA	3,453,463	C→T	7.9%	intergenic (‑17/+96)	PP_3069 ← / ← ppiC‑I	outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C
RA	3,453,480	A→G	8.8%	intergenic (‑34/+79)	PP_3069 ← / ← ppiC‑I	outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C
RA	3,466,841	T→G	16.6%	intergenic (‑16/+108)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,474,290	T→C	10.0%	D808G (GAT→GGT)	PP_3087 ←	excinuclease ABC subunit A
RA	3,486,518	T→C	6.8%	E51E (GAA→GAG)	PP_3092 ←	hypothetical protein
RA	3,498,893	G→A	8.9%	intergenic (‑40/+1160)	PP_5563 ← / ← PP_5565	membrane protein/hypothetical protein
RA	3,527,993	A→G	5.6%	S402G (AGC→GGC)	imuB →	DNA repair DNA linked protein
RA	3,528,566	T→A	13.0%	L128Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,528,569	T→A	14.2%	L129Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,542,318	A→G	6.1%	Y135Y (TAT→TAC)	galE ←	UDP‑glucose 4‑epimerase
RA	3,552,436	A→T	6.0%	K31N (AAA→AAT)	PP_3137 →	group 2 family glycosyl transferase
RA	3,563,403	T→A	7.5%	K141* (AAG→TAG)	PP_3146 ←	oxidoreductase
RA	3,569,454	C→T	10.6%	intergenic (+13/+25)	PP_3150 → / ← sad‑II	hypothetical protein/NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,569,457	A→T	10.9%	intergenic (+16/+22)	PP_3150 → / ← sad‑II	hypothetical protein/NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,569,458	A→T	10.9%	intergenic (+17/+21)	PP_3150 → / ← sad‑II	hypothetical protein/NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,569,459	A→T	12.9%	intergenic (+18/+20)	PP_3150 → / ← sad‑II	hypothetical protein/NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,569,462	A→G	10.9%	intergenic (+21/+17)	PP_3150 → / ← sad‑II	hypothetical protein/NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,577,653	T→A	10.4%	L23Q (CTG→CAG)	PP_3158 →	hypothetical protein
RA	3,577,655	T→G	10.4%	C24G (TGC→GGC)	PP_3158 →	hypothetical protein
RA	3,577,658	G→A	10.1%	A25T (GCC→ACC)	PP_3158 →	hypothetical protein
RA	3,584,899	A→C	7.6%	intergenic (+46/‑89)	benC → / → benD	benzoate 1,2‑dioxygenase electron transfer component/1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase
RA	3,593,269	T→A	13.6%	I102N (ATC→AAC)	PP_3171 →	hypothetical protein
RA	3,609,858	C→A	8.9%	K125N (AAG→AAT) ‡	PP_3183 ←	SCO1/SenC family protein
RA	3,609,859	T→A	8.9%	K125M (AAG→ATG) ‡	PP_3183 ←	SCO1/SenC family protein
RA	3,609,860	T→G	9.0%	K125Q (AAG→CAG) ‡	PP_3183 ←	SCO1/SenC family protein
RA	3,624,144	G→C	18.1%	intergenic (‑92/+81)	PP_3194 ← / ← PP_3195	hypothetical protein/hypothetical protein
RA	3,644,948	C→T	14.8%	intergenic (‑43/+23)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,644,951	A→G	14.6%	intergenic (‑46/+20)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,650,014	A→T	8.6%	intergenic (+1491/+200)	PP_3214 → / ← PP_3216	hypothetical protein/cysteine dioxygenase
RA	3,650,015	T→A	8.6%	intergenic (+1492/+199)	PP_3214 → / ← PP_3216	hypothetical protein/cysteine dioxygenase
RA	3,650,018	T→A	9.1%	intergenic (+1495/+196)	PP_3214 → / ← PP_3216	hypothetical protein/cysteine dioxygenase
RA	3,650,019	A→T	9.1%	intergenic (+1496/+195)	PP_3214 → / ← PP_3216	hypothetical protein/cysteine dioxygenase
RA	3,662,976	G→A	13.1%	intergenic (‑143/+43)	PP_3226 ← / ← PP_3227	acyl‑CoA dehydrogenase‑related protein/LysR family transcriptional regulator
RA	3,662,977	T→A	13.2%	intergenic (‑144/+42)	PP_3226 ← / ← PP_3227	acyl‑CoA dehydrogenase‑related protein/LysR family transcriptional regulator
RA	3,662,978	T→C	13.7%	intergenic (‑145/+41)	PP_3226 ← / ← PP_3227	acyl‑CoA dehydrogenase‑related protein/LysR family transcriptional regulator
RA	3,693,848	C→G	9.6%	D774H (GAC→CAC)	ligD ←	DNA ligase D
RA	3,718,207	C→T	7.1%	R129H (CGC→CAC)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,761,713	G→T	5.1%	G354V (GGG→GTG)	PP_3325 →	ferric siderophore receptor
RA	3,762,926	T→C	5.8%	F57L (TTC→CTC)	PP_3326 →	hypothetical protein
RA	3,762,930:1	+C	5.6%	coding (173/723 nt)	PP_3326 →	hypothetical protein
RA	3,762,947	A→T	5.8%	I64F (ATC→TTC)	PP_3326 →	hypothetical protein
RA	3,763,502	A→G	8.7%	intergenic (+22/+1653)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,504	G→C	8.8%	intergenic (+24/+1651)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,506	C→T	9.2%	intergenic (+26/+1649)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,780,565	C→T	6.4%	A339V (GCC→GTC)	nikA →	nickel ABC transporter substrate‑binding protein
MC JC	3,788,572	Δ23 bp	100%	coding (41‑63/1392 nt)	PP_3350 ←	hypothetical protein
RA	3,798,567	G→C	6.9%	A111A (GCC→GCG)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,798,570	G→C	6.6%	I110M (ATC→ATG)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,821,793	T→A	8.7%	T30S (ACC→TCC)	ptxD ←	phosphonate dehydrogenase
RA	3,821,794	G→C	9.3%	D29E (GAC→GAG) ‡	ptxD ←	phosphonate dehydrogenase
RA	3,821,795	T→A	9.3%	D29V (GAC→GTC) ‡	ptxD ←	phosphonate dehydrogenase
RA	3,830,256	C→G	10.2%	G375A (GGC→GCC)	PP_3383 ←	gluconate 2‑dehydrogenase flavoprotein subunit
RA	3,831,436	G→A	7.8%	R230C (CGC→TGC)	PP_3384 ←	gluconate 2‑dehydrogenase gamma subunit
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,877,506	C→A	6.1%	P199T (CCG→ACG)	PP_3425 →	RND family transporter MFP subunit
RA	3,877,512	A→G	6.8%	T201A (ACC→GCC) ‡	PP_3425 →	RND family transporter MFP subunit
RA	3,877,513	C→T	6.4%	T201I (ACC→ATC) ‡	PP_3425 →	RND family transporter MFP subunit
RA	3,886,343	C→G	6.8%	G505A (GGC→GCC)	PP_3430 ←	two‑component system sensor histidine kinase/response regulator
RA	3,909,632	T→C	6.4%	L527L (CTT→CTC)	PP_3450 →	TPR repeat‑containing protein
RA	3,927,701	G→C	6.4%	A291P (GCC→CCC) ‡	peaE →	phenylacetaldehyde dehydrogenase
RA	3,927,703	C→G	5.8%	A291A (GCC→GCG) ‡	peaE →	phenylacetaldehyde dehydrogenase
RA	3,927,705	G→C	5.4%	G292A (GGT→GCT)	peaE →	phenylacetaldehyde dehydrogenase
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,974,391	T→A	6.1%	N28Y (AAC→TAC)	PP_3503 ←	sigma‑54 dependent transcriptional regulator
RA	3,974,392	G→A	6.2%	R27R (CGC→CGT)	PP_3503 ←	sigma‑54 dependent transcriptional regulator
RA	3,984,040	G→T	9.7%	intergenic (+34/+156)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,984,041	C→T	9.8%	intergenic (+35/+155)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,984,042	A→G	9.7%	intergenic (+36/+154)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,984,043	A→C	9.7%	intergenic (+37/+153)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	4,006,226	C→T	7.5%	A550A (GCG→GCA)	PP_3535 ←	gamma‑glutamyltransferase
RA	4,013,586	T→C	11.1%	noncoding (343/385 nt)	PP_mr44 →	CrcZ ncRNA
RA	4,013,587	T→G	11.1%	noncoding (344/385 nt)	PP_mr44 →	CrcZ ncRNA
RA	4,013,588	C→A	11.1%	noncoding (345/385 nt)	PP_mr44 →	CrcZ ncRNA
RA	4,013,589	G→A	11.7%	noncoding (346/385 nt)	PP_mr44 →	CrcZ ncRNA
RA	4,041,854	C→G	6.4%	intergenic (+148/‑59)	PP_3562 → / → PP_3563	hypothetical protein/hypothetical protein
RA	4,049,907	A→G	10.7%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,910	C→G	13.1%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,913	C→T	9.3%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,052,692	G→C	10.1%	L140V (CTG→GTG)	PP_3572 ←	hypothetical protein
RA	4,052,693	G→C	8.2%	H139Q (CAC→CAG)	PP_3572 ←	hypothetical protein
RA	4,063,627	C→A	7.2%	D238Y (GAC→TAC)	PP_3581 ←	membrane protein
RA	4,090,967	G→A	9.3%	V340M (GTG→ATG)	gudP →	glucarate transporter
RA	4,136,489	T→A	5.8%	F233Y (TTC→TAC)	PP_3640 →	AraC family transcriptional regulator
RA	4,150,529	C→G	7.8%	P44P (CCC→CCG)	PP_3655 →	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,151,933:1	+C	8.1%	intergenic (+123/+28)	PP_3655 → / ← PP_3656	cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin
RA	4,151,938	A→T	9.4%	intergenic (+128/+23)	PP_3655 → / ← PP_3656	cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin
RA	4,151,942	Δ1 bp	8.5%	intergenic (+132/+19)	PP_3655 → / ← PP_3656	cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin
RA	4,168,391	C→T	8.5%	G501D (GGC→GAC)	katG ←	catalase‑peroxidase
RA	4,169,556	C→T	17.4%	A113T (GCC→ACC)	katG ←	catalase‑peroxidase
RA	4,173,343	T→C	6.7%	T146A (ACG→GCG)	PP_3672 ←	hypothetical protein
RA	4,225,951	A→G	8.5%	S49S (TCT→TCC)	PP_3705 ←	membrane protein
RA	4,242,581	A→G	11.1%	S86P (TCG→CCG)	PP_3719 ←	putrescine‑binding protein
RA	4,248,515	C→T	8.9%	V504V (GTG→GTA)	PP_3724 ←	acyl‑CoA synthetase
RA	4,260,386	G→A	8.1%	S792S (AGC→AGT)	PP_3734 ←	ABC transporter permease
RA	4,273,231	A→T	8.8%	Y216N (TAC→AAC)	glcC ←	transcriptional regulator GlcC
RA	4,273,232	C→G	8.8%	L215F (TTG→TTC) ‡	glcC ←	transcriptional regulator GlcC
RA	4,273,233	A→T	8.5%	L215* (TTG→TAG) ‡	glcC ←	transcriptional regulator GlcC
RA	4,274,413	G→T	10.8%	V124L (GTG→TTG)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,289,430	T→G	9.1%	K1053Q (AAG→CAG)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,435	T→A	8.7%	E1051V (GAG→GTG)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,437	C→A	8.0%	L1050L (CTG→CTT)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,301,058	A→G	8.5%	T75A (ACG→GCG)	PP_3774 →	hypothetical protein
RA	4,301,071	C→T	11.6%	A79V (GCC→GTC)	PP_3774 →	hypothetical protein
RA	4,348,705	A→G	64.7%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,379,889	G→T	6.3%	L213M (CTG→ATG)	PP_3856 ←	hypothetical protein
RA	4,405,314	C→T	9.1%	G83R (GGG→AGG)	PP_3886 ←	hypothetical protein
RA	4,405,320	T→C	8.9%	M81V (ATG→GTG)	PP_3886 ←	hypothetical protein
RA	4,405,321	G→A	8.9%	H80H (CAC→CAT)	PP_3886 ←	hypothetical protein
RA	4,405,327	A→G	9.1%	P78P (CCT→CCC)	PP_3886 ←	hypothetical protein
RA	4,411,323	C→T	6.0%	intergenic (‑183/+142)	PP_3894 ← / ← PP_3895	replication protein O/regulatory protein Cro
RA	4,453,492	C→G	7.3%	G1032G (GGC→GGG)	nicB →	nicotinate dehydrogenase subunit B
RA	4,463,943	C→T	12.1%	A136V (GCC→GTC)	PP_3956 →	hypothetical protein
RA	4,463,953	A→T	18.9%	*139C (TGA→TGT)	PP_3956 →	hypothetical protein
RA	4,463,956	G→C	19.5%	intergenic (+3/+25)	PP_3956 → / ← betT‑III	hypothetical protein/choline/carnitine/betaine transporter BetTC
RA	4,463,959	A→T	19.0%	intergenic (+6/+22)	PP_3956 → / ← betT‑III	hypothetical protein/choline/carnitine/betaine transporter BetTC
RA	4,482,750	T→A	6.7%	A252A (GCT→GCA)	PP_3974 →	LysR family transcriptional regulator
RA	4,482,753	T→A	6.8%	I253I (ATT→ATA)	PP_3974 →	LysR family transcriptional regulator
RA	4,484,160	T→G	8.3%	V164G (GTT→GGT)	PP_3976 →	isochorismatase family hydrolase
RA	4,484,163	C→A	8.7%	T165N (ACC→AAC)	PP_3976 →	isochorismatase family hydrolase
RA	4,496,667	T→A	14.3%	intergenic (+17/+35)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,496,668	A→G	14.9%	intergenic (+18/+34)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,496,671	C→T	14.3%	intergenic (+21/+31)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,496,672	T→A	14.3%	intergenic (+22/+30)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,527,403	T→G	8.3%	V150G (GTC→GGC)	purB →	adenylosuccinate lyase
RA	4,527,407	C→G	6.9%	A151A (GCC→GCG)	purB →	adenylosuccinate lyase
RA	4,546,774	A→G	9.7%	L191P (CTG→CCG)	pydP ←	NCS1 family transporter PydP
RA	4,575,038	A→G	6.8%	Q570Q (CAA→CAG)	glgX →	glycogen debranching enzyme
RA	4,575,039	G→C	6.7%	E571Q (GAG→CAG)	glgX →	glycogen debranching enzyme
RA	4,576,047	T→C	11.8%	H148H (CAT→CAC)	ybhP‑II →	phosphohydrolase
RA	4,576,050	G→A	11.8%	A149A (GCG→GCA)	ybhP‑II →	phosphohydrolase
RA	4,576,052	T→A	11.7%	V150D (GTC→GAC)	ybhP‑II →	phosphohydrolase
RA	4,576,054	T→C	11.6%	C151R (TGC→CGC)	ybhP‑II →	phosphohydrolase
RA	4,576,057	G→A	11.6%	V152M (GTG→ATG)	ybhP‑II →	phosphohydrolase
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	100%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,604,204	C→G	9.4%	P12A (CCG→GCG) ‡	PP_4076 →	hypothetical protein
RA	4,604,205	C→G	9.5%	P12R (CCG→CGG) ‡	PP_4076 →	hypothetical protein
RA	4,614,798	A→G	8.5%	Q390R (CAG→CGG)	PP_4085 →	rhs family protein
RA	4,622,914	A→G	9.1%	intergenic (+1507/+3057)	PP_5654 → / ← PP_4091	phosphotriesterase/transposase
RA	4,647,850	T→G	6.7%	D430A (GAC→GCC) ‡	PP_4112 ←	sulfate transporter
RA	4,647,851	C→A	6.9%	D430Y (GAC→TAC) ‡	PP_4112 ←	sulfate transporter
RA	4,649,975	A→G	8.5%	P313P (CCT→CCC)	PP_4113 ←	hypothetical protein
RA	4,649,982	T→G	8.7%	H311P (CAC→CCC)	PP_4113 ←	hypothetical protein
RA	4,649,985	T→A	8.7%	K310M (AAG→ATG) ‡	PP_4113 ←	hypothetical protein
RA	4,649,986	T→A	8.7%	K310* (AAG→TAG) ‡	PP_4113 ←	hypothetical protein
RA	4,649,989	C→A	8.8%	G309C (GGC→TGC)	PP_4113 ←	hypothetical protein
RA	4,649,996	C→T	8.7%	P306P (CCG→CCA)	PP_4113 ←	hypothetical protein
RA	4,673,549	G→C	8.7%	P107P (CCG→CCC)	PP_4137 →	outer membrane siderophore receptor
RA	4,673,550	G→C	8.8%	G108R (GGG→CGG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,673,551	G→C	8.8%	G108A (GGG→GCG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,686,285	C→G	7.7%	A366A (GCC→GCG)	yejA →	microcin C ABC transporter substrate‑binding protein
RA	4,686,286	C→G	7.7%	R367G (CGC→GGC)	yejA →	microcin C ABC transporter substrate‑binding protein
RA	4,688,066	C→G	12.5%	P348A (CCG→GCG)	PP_4148 →	ABC transporter permease
RA	4,688,071	C→G	12.2%	R349R (CGC→CGG)	PP_4148 →	ABC transporter permease
RA	4,695,470	T→C	8.2%	I272V (ATC→GTC)	PP_4155 ←	amine oxidase
RA	4,696,573	A→G	9.1%	E67G (GAG→GGG)	PP_4156 →	LysR family transcriptional regulator
RA	4,696,576	C→T	9.3%	P68L (CCC→CTC)	PP_4156 →	LysR family transcriptional regulator
RA	4,704,312	G→C	6.5%	S284R (AGC→AGG)	kdpA ←	potassium‑transporting ATPase subunit A
RA	4,705,413	T→A	11.2%	intergenic (‑151/+26)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,414	T→A	11.6%	intergenic (‑152/+25)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,424	A→G	11.1%	intergenic (‑162/+15)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,425	G→A	11.1%	intergenic (‑163/+14)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,726,615	G→A	12.7%	A256V (GCG→GTG)	brnQ ←	branched‑chain amino acid transporter
RA	4,726,619	T→C	7.1%	I255V (ATC→GTC)	brnQ ←	branched‑chain amino acid transporter
RA	4,726,624	T→C	7.0%	H253R (CAC→CGC)	brnQ ←	branched‑chain amino acid transporter
RA	4,735,320	C→A	100%	M105I (ATG→ATT)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,740,795	T→G	11.5%	intergenic (+32/+721)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,796	C→A	9.1%	intergenic (+33/+720)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,841	T→A	13.0%	intergenic (+78/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,844	C→G	10.8%	intergenic (+81/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,987	A→G	5.4%	intergenic (+224/+529)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,747,373	A→T	6.5%	M130K (ATG→AAG) ‡	etfB ←	electron transfer flavoprotein subunit beta
RA	4,747,374	T→G	6.9%	M130L (ATG→CTG) ‡	etfB ←	electron transfer flavoprotein subunit beta
RA	4,755,921	Δ1 bp	6.2%	coding (1162/1965 nt)	pvdT →	pyoverdine ABC transporter ATP‑binding protein/permease
RA	4,755,929:1	+A	6.3%	coding (1170/1965 nt)	pvdT →	pyoverdine ABC transporter ATP‑binding protein/permease
RA	4,767,818	C→T	8.5%	intergenic (+32/+37)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,767,819	A→G	8.4%	intergenic (+33/+36)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,779,407	C→A	14.1%	intergenic (‑141/+20)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,779,408	A→T	13.1%	intergenic (‑142/+19)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,779,409	T→G	12.7%	intergenic (‑143/+18)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,793,968	A→T	6.7%	intergenic (‑129/+27)	pvdI ← / ← PP_4222	non‑ribosomal peptide synthetase/protein SyrP
RA	4,793,969	A→T	6.6%	intergenic (‑130/+26)	pvdI ← / ← PP_4222	non‑ribosomal peptide synthetase/protein SyrP
RA	4,796,604	A→G	12.7%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,612	C→T	16.6%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,614	G→C	16.4%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,617	G→C	15.3%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,619	A→G	14.0%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,627	C→T	13.9%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,818,220	C→T	9.0%	intergenic (+121/+16)	PP_4242 → / ← pvdL	conserved protein of unknown function with Rhs repeat‑associated core domain/non‑ribosomal peptide synthetase
RA	4,818,221	A→T	8.3%	intergenic (+122/+15)	PP_4242 → / ← pvdL	conserved protein of unknown function with Rhs repeat‑associated core domain/non‑ribosomal peptide synthetase
RA	4,818,222	A→G	8.3%	intergenic (+123/+14)	PP_4242 → / ← pvdL	conserved protein of unknown function with Rhs repeat‑associated core domain/non‑ribosomal peptide synthetase
RA	4,820,199	A→T	10.8%	L3664Q (CTG→CAG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,820,202	A→T	9.4%	L3663Q (CTG→CAG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,820,205	A→T	9.4%	L3662Q (CTG→CAG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,823,340	C→G	5.4%	G2617A (GGC→GCC) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,823,341	C→G	5.4%	G2617R (GGC→CGC) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,832,046	C→G	6.8%	intergenic (+21/+131)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,832,057	T→A	6.7%	intergenic (+32/+120)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,832,060	A→T	6.9%	intergenic (+35/+117)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,832,068	C→G	8.9%	intergenic (+43/+109)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,832,071	T→G	7.4%	intergenic (+46/+106)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,837,281	A→G	6.4%	S430G (AGC→GGC)	ccoN‑I →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,843,873	C→A	6.1%	L241M (CTG→ATG) ‡	PP_4259 →	iron‑sulfur cluster‑binding protein
RA	4,843,875	G→C	6.8%	L241L (CTG→CTC) ‡	PP_4259 →	iron‑sulfur cluster‑binding protein
RA	4,843,877	T→G	6.2%	I242S (ATC→AGC)	PP_4259 →	iron‑sulfur cluster‑binding protein
RA	4,851,693	A→G	7.8%	intergenic (+85/+34)	apt → / ← recR	adenine phosphoribosyltransferase/recombination protein RecR
RA	4,873,746	C→A	5.6%	intergenic (‑127/+31)	aqpZ ← / ← PP_4283	aquaporin Z/GntR family transcriptional regulator
RA	4,873,747	T→A	6.3%	intergenic (‑128/+30)	aqpZ ← / ← PP_4283	aquaporin Z/GntR family transcriptional regulator
RA	4,873,748	T→G	5.3%	intergenic (‑129/+29)	aqpZ ← / ← PP_4283	aquaporin Z/GntR family transcriptional regulator
RA	4,882,444	G→C	6.0%	G11A (GGC→GCC)	PP_4291 →	hypothetical protein
RA	4,882,451	C→G	5.6%	S13R (AGC→AGG)	PP_4291 →	hypothetical protein
RA	4,896,422	T→C	10.2%	intergenic (+55/‑153)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,425	G→A	10.9%	intergenic (+58/‑150)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,445	G→A	9.8%	intergenic (+78/‑130)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,467	A→G	11.4%	intergenic (+100/‑108)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,900,051	G→A	9.6%	intergenic (+12/‑486)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,065	A→G	8.4%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,069	G→A	6.7%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,070	T→C	6.9%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,074	C→T	7.4%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,901,656	G→A	10.1%	A374T (GCC→ACC)	PP_4309 →	NCS1 family transporter
RA	4,901,659	A→G	9.7%	T375A (ACC→GCC)	PP_4309 →	NCS1 family transporter
RA	4,901,662	C→A	10.0%	L376M (CTG→ATG) ‡	PP_4309 →	NCS1 family transporter
RA	4,901,663	T→G	9.2%	L376R (CTG→CGG) ‡	PP_4309 →	NCS1 family transporter
RA	4,901,666	C→T	9.7%	A377V (GCG→GTG)	PP_4309 →	NCS1 family transporter
RA	4,901,669	T→C	9.5%	V378A (GTG→GCG)	PP_4309 →	NCS1 family transporter
RA	4,905,499	C→T	7.0%	intergenic (‑93/+35)	PP_4313 ← / ← PP_4314	peptidylprolyl isomerase/hypothetical protein
RA	4,905,846	C→T	6.4%	M59I (ATG→ATA)	PP_4314 ←	hypothetical protein
RA	4,905,851	T→C	6.8%	S58G (AGC→GGC)	PP_4314 ←	hypothetical protein
RA	4,917,965	G→A	8.0%	V122I (GTC→ATC) ‡	PP_4328 →	hypothetical protein
RA	4,917,966	T→C	8.2%	V122A (GTC→GCC) ‡	PP_4328 →	hypothetical protein
RA	4,922,426	G→A	11.1%	T117T (ACC→ACT) ‡	PP_4331 ←	hypothetical protein
RA	4,922,427	G→C	11.1%	T117S (ACC→AGC) ‡	PP_4331 ←	hypothetical protein
RA	4,922,428	T→C	11.3%	T117A (ACC→GCC) ‡	PP_4331 ←	hypothetical protein
RA	4,936,626	G→C	7.1%	intergenic (‑37/‑381)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,628	G→C	7.1%	intergenic (‑39/‑379)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,630	G→C	7.1%	intergenic (‑41/‑377)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,937,497	A→G	6.1%	D164G (GAC→GGC)	PP_4345 →	GntR family transcriptional regulator
RA	4,945,616	C→G	5.8%	R322P (CGG→CCG)	flhB ←	flagellin export apparatus substrate specificity protein
RA	4,948,990	C→A	6.6%	G119V (GGC→GTC)	fliN ←	flagellar basal‑body C‑ring protein
RA	4,948,992	G→C	5.3%	A118A (GCC→GCG)	fliN ←	flagellar basal‑body C‑ring protein
RA	4,948,996	A→T	5.5%	L117Q (CTG→CAG)	fliN ←	flagellar basal‑body C‑ring protein
RA	4,949,002	T→G	5.6%	D115A (GAC→GCC)	fliN ←	flagellar basal‑body C‑ring protein
RA	4,950,972	T→G	22.6%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,950,973	C→A	22.7%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,958,607	C→A	7.0%	Q31H (CAG→CAT)	fliG ←	flagellar motor switch protein
RA	4,976,139	T→C	6.2%	Q211R (CAG→CGG)	flgJ ←	peptidoglycan hydrolase FlgJ
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,986,048	C→G	8.9%	P97R (CCG→CGG)	flgA →	flagella basal body P‑ring formation protein
RA	4,993,997	C→G	7.5%	T227T (ACC→ACG)	bkdAB →	branched‑chain alpha‑keto acid dehydrogenase complex subunit beta
RA	5,006,814	C→A	8.9%	L1056I (CTC→ATC)	PP_4410 →	hypothetical protein
RA	5,006,817	C→G	8.2%	R1057G (CGA→GGA)	PP_4410 →	hypothetical protein
RA	5,006,820	T→G	8.7%	S1058A (TCA→GCA)	PP_4410 →	hypothetical protein
RA	5,028,917	G→T	7.0%	K395N (AAG→AAT)	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,918	G→C	6.1%	D396H (GAC→CAC) ‡	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,919	A→C	6.0%	D396A (GAC→GCC) ‡	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,994	A→G	6.8%	intergenic (+71/‑368)	PP_4432 → / → PP_4433	Xaa‑Pro aminopeptidase/amino acid MFS transporter
RA	5,126,407	G→A	8.7%	intergenic (‑27/‑41)	PP_4513 ← / → PP_4514	hypothetical protein/alpha/beta hydrolase superfamily esterase
RA	5,134,986	T→A	12.5%	intergenic (‑47/+18)	PP_4520 ← / ← PP_4521	hypothetical protein/aerotaxis receptor
RA	5,134,987	T→A	12.5%	intergenic (‑48/+17)	PP_4520 ← / ← PP_4521	hypothetical protein/aerotaxis receptor
RA	5,134,988	T→A	12.4%	intergenic (‑49/+16)	PP_4520 ← / ← PP_4521	hypothetical protein/aerotaxis receptor
RA	5,182,059	G→T	6.7%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,065	T→G	7.8%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,066	C→A	10.0%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,183,241	C→G	5.6%	A165P (GCC→CCC)	PP_4563 ←	hypothetical protein
RA	5,183,245	G→C	5.6%	F163L (TTC→TTG)	PP_4563 ←	hypothetical protein
RA	5,183,249	C→G	5.6%	G162A (GGC→GCC)	PP_4563 ←	hypothetical protein
RA	5,186,053	T→G	10.2%	E136A (GAG→GCG)	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,188,586	G→A	6.3%	T104M (ACG→ATG)	PP_4568 ←	metabolite efflux pump
RA	5,194,887	T→G	9.2%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,217,609	T→C	8.5%	S228P (TCG→CCG)	moaA →	cyclic pyranopterin monophosphate synthase
RA	5,229,191	Δ1 bp	6.9%	intergenic (‑133/+43)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,195	C→G	6.9%	intergenic (‑137/+39)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,198	C→G	6.9%	intergenic (‑140/+36)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,201:1	+C	7.4%	intergenic (‑143/+33)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,233,543	T→C	10.9%	V136A (GTC→GCC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,233,546	A→T	10.7%	D137V (GAC→GTC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,233,549	G→A	11.1%	G138D (GGC→GAC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,237,046	T→C	7.2%	intergenic (+55/‑124)	fecA → / → PP_5700	outer membrane ferric citrate porin/hypothetical protein
RA	5,237,541	T→C	6.5%	M1M (TTG→CTG) †	PP_4614 →	hypothetical protein
RA	5,244,285	C→A	5.1%	R66L (CGC→CTC)	hmgA ←	homogentisate 1,2‑dioxygenase
RA	5,245,722	G→A	7.5%	A980V (GCG→GTG)	PP_4623 ←	hypothetical protein
RA	5,253,579	A→T	7.8%	I154F (ATC→TTC)	PP_5702 →	hypothetical protein
RA	5,262,543	Δ1 bp	5.4%	coding (716/1488 nt)	PP_4638 →	methylenetetrahydrofolate reductase
RA	5,262,544	Δ1 bp	5.4%	coding (717/1488 nt)	PP_4638 →	methylenetetrahydrofolate reductase
RA	5,262,545	Δ1 bp	5.3%	coding (718/1488 nt)	PP_4638 →	methylenetetrahydrofolate reductase
RA	5,269,313	G→C	6.4%	L342L (CTC→CTG) ‡	radA ←	DNA repair enzyme
RA	5,269,314	A→T	6.6%	L342H (CTC→CAC) ‡	radA ←	DNA repair enzyme
RA	5,269,315	G→C	6.8%	L342V (CTC→GTC) ‡	radA ←	DNA repair enzyme
RA	5,289,588	G→C	7.3%	L246L (CTC→CTG) ‡	PP_4663 ←	transmembrane protein
RA	5,289,589	A→T	6.7%	L246H (CTC→CAC) ‡	PP_4663 ←	transmembrane protein
RA	5,297,128	G→A	5.6%	L79L (CTG→TTG)	TpbB ←	diguanylate cyclase
RA	5,297,132	T→A	5.5%	E77D (GAA→GAT)	TpbB ←	diguanylate cyclase
RA	5,297,136	T→C	5.8%	N76S (AAC→AGC)	TpbB ←	diguanylate cyclase
RA	5,313,276	C→G	12.7%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,313,279	C→G	12.9%	intergenic (‑598/+116)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,315,981	A→G	7.3%	intergenic (‑49/+102)	PP_4677 ← / ← ilvC	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/ketol‑acid reductoisomerase
RA	5,329,396	T→A	5.7%	L10Q (CTG→CAG)	PP_4690 →	Rieske 2Fe‑2S family protein
RA	5,329,641	C→A	6.7%	L92M (CTG→ATG)	PP_4690 →	Rieske 2Fe‑2S family protein
RA	5,356,810	T→C	5.8%	K651E (AAG→GAG)	infB ←	translation initiation factor IF‑2
RA	5,356,815	A→C	6.3%	V649G (GTT→GGT)	infB ←	translation initiation factor IF‑2
RA	5,358,671	C→A	7.0%	P30P (CCG→CCT)	infB ←	translation initiation factor IF‑2
RA	5,364,420	C→G	8.1%	G72R (GGT→CGT)	folP ←	dihydropteroate synthase
RA	5,364,421	C→G	7.8%	P71P (CCG→CCC) ‡	folP ←	dihydropteroate synthase
RA	5,364,423	G→T	7.8%	P71T (CCG→ACG) ‡	folP ←	dihydropteroate synthase
RA	5,371,996	Δ1 bp	6.0%	intergenic (‑60/+37)	carB ← / ← carA	carbamoyl‑phosphate synthase large subunit/carbamoyl‑phosphate synthase small subunit
RA	5,372,002	G→C	7.2%	intergenic (‑66/+31)	carB ← / ← carA	carbamoyl‑phosphate synthase large subunit/carbamoyl‑phosphate synthase small subunit
RA	5,372,003	G→C	8.6%	intergenic (‑67/+30)	carB ← / ← carA	carbamoyl‑phosphate synthase large subunit/carbamoyl‑phosphate synthase small subunit
RA	5,372,008:1	+C	7.2%	intergenic (‑72/+25)	carB ← / ← carA	carbamoyl‑phosphate synthase large subunit/carbamoyl‑phosphate synthase small subunit
RA	5,381,267	T→C	9.0%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,268	T→A	8.5%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,269	G→A	9.1%	intergenic (+34/+31)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,382,269	A→T	8.8%	E124D (GAA→GAT)	smpB →	SsrA‑binding protein
RA	5,382,270	A→T	8.8%	I125F (ATC→TTC)	smpB →	SsrA‑binding protein
RA	5,391,824	G→T	8.1%	L24L (CTC→CTA)	PP_5709 ←	hypothetical protein
RA	5,418,818	G→T	13.1%	P85T (CCT→ACT)	PP_4758 ←	MFS transporter
RA	5,418,819	T→A	13.3%	V84V (GTA→GTT) ‡	PP_4758 ←	MFS transporter
RA	5,418,820	A→C	12.9%	V84G (GTA→GGA) ‡	PP_4758 ←	MFS transporter
RA	5,423,158	G→A	8.9%	A83V (GCG→GTG)	PP_4763 ←	acetyltransferase
RA	5,424,484	T→C	8.8%	L28P (CTG→CCG)	PP_4764 →	histone deacetylase family protein
RA	5,424,490	Δ1 bp	8.0%	coding (89/915 nt)	PP_4764 →	histone deacetylase family protein
RA	5,424,497	C→G	9.8%	H32Q (CAC→CAG)	PP_4764 →	histone deacetylase family protein
RA	5,424,498	C→G	9.8%	L33V (CTG→GTG)	PP_4764 →	histone deacetylase family protein
RA	5,424,504:1	+T	9.6%	coding (103/915 nt)	PP_4764 →	histone deacetylase family protein
RA	5,440,011	T→C	8.0%	D272G (GAC→GGC)	amn ←	AMP nucleosidase
RA	5,440,014	G→A	8.1%	A271V (GCC→GTC)	amn ←	AMP nucleosidase
RA	5,458,892:1	+A	5.1%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,458,898	Δ1 bp	5.1%	intergenic (+23/‑39)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,462,393	T→G	11.4%	intergenic (+16/+18)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,470,378	G→A	7.8%	V509V (GTC→GTT)	mrdA‑II ←	transpeptidase
RA	5,475,881	T→G	5.3%	I37M (ATT→ATG)	PP_4813 →	PAP2 family protein/DedA family protein
RA	5,475,884	C→A	6.1%	I38I (ATC→ATA)	PP_4813 →	PAP2 family protein/DedA family protein
RA	5,485,150	A→G	17.1%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,153	A→G	17.2%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,154	T→C	19.6%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,159	G→A	25.0%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,162	T→C	18.9%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,167	G→A	17.5%	intergenic (+73/‑74)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,168	C→T	15.8%	intergenic (+74/‑73)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,171	C→T	15.3%	intergenic (+77/‑70)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,518,908	C→T	6.8%	M1V (GTG→GTA) †	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,528,838	A→C	6.7%	intergenic (‑52/+542)	ydfG ← / ← livF‑II	bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/malonic semialdehyde reductase/ABC transporter ATP‑binding protein
RA	5,538,568	A→T	11.4%	intergenic (+58/+63)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,569	A→T	15.2%	intergenic (+59/+62)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,571	G→C	10.8%	intergenic (+61/+60)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,573	A→T	10.1%	intergenic (+63/+58)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,574	A→T	12.5%	intergenic (+64/+57)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,577	G→T	11.7%	intergenic (+67/+54)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,539,279	C→G	6.5%	K569N (AAG→AAC)	PP_4872 ←	hypothetical protein
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,565,898	T→C	9.2%	T530A (ACC→GCC)	mutL ←	DNA mismatch repair protein MutL
RA	5,565,909	A→T	5.3%	L526Q (CTG→CAG)	mutL ←	DNA mismatch repair protein MutL
RA	5,586,523	T→C	10.3%	T255A (ACC→GCC)	PP_4914 ←	phytase‑like protein
RA	5,586,526	A→G	10.5%	F254L (TTT→CTT)	PP_4914 ←	phytase‑like protein
RA	5,586,528	A→T	10.5%	L253Q (CTG→CAG)	PP_4914 ←	phytase‑like protein
RA	5,586,530	C→T	10.7%	K252K (AAG→AAA)	PP_4914 ←	phytase‑like protein
RA	5,586,533	G→A	10.1%	G251G (GGC→GGT)	PP_4914 ←	phytase‑like protein
RA	5,594,129	A→T	13.3%	intergenic (‑76/+69)	PP_4921 ← / ← thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
RA	5,599,894	C→G	8.0%	P1196P (CCG→CCC)	PP_4924 ←	subtilase family serine protease
RA	5,602,181	T→A	5.2%	D434V (GAT→GTT)	PP_4924 ←	subtilase family serine protease
RA	5,602,184	G→C	5.1%	A433G (GCC→GGC)	PP_4924 ←	subtilase family serine protease
RA	5,602,187	T→A	5.2%	N432I (AAC→ATC)	PP_4924 ←	subtilase family serine protease
RA	5,624,806	C→G	6.3%	G319R (GGC→CGC)	PP_4943 ←	glycosyl transferase
RA	5,640,106	C→A	14.8%	Q400K (CAG→AAG)	PP_4950 →	hypothetical protein
RA	5,651,374	T→G	7.3%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,377	C→A	9.4%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,655,626:1	+A	19.4%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,631	T→G	22.6%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,636	C→A	22.0%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,641	Δ1 bp	21.2%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,658,116	T→G	7.1%	H57Q (CAT→CAG)	sahR →	methionine metabolism transcriptional regulator
RA	5,658,123	A→G	6.7%	K60E (AAG→GAG)	sahR →	methionine metabolism transcriptional regulator
RA	5,658,129	C→A	6.8%	L62M (CTG→ATG)	sahR →	methionine metabolism transcriptional regulator
RA	5,660,182	G→T	7.2%	intergenic (+35/‑194)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,660,185	A→C	7.7%	intergenic (+38/‑191)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,665,085:1	+T	5.3%	coding (620/834 nt)	PP_4973 ←	membrane protein
RA	5,667,258	G→T	8.0%	intergenic (+36/+35)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,667,259	A→C	7.6%	intergenic (+37/+34)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,671,702	G→T	9.0%	intergenic (+121/‑49)	PP_4978 → / → PP_4979	hypothetical protein/substrate‑binding protein
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,679,142	G→T	9.0%	E256D (GAG→GAT)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
JC	5,681,415	+CGGG	100%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,684,804	G→C	5.1%	R697G (CGC→GGC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,684,809	T→A	5.0%	D695V (GAC→GTC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,684,814	G→C	5.5%	A693A (GCC→GCG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,700,369	T→C	8.3%	S283P (TCG→CCG)	phaA →	poly(3‑hydroxyalkanoate) polymerase
RA	5,706,587	T→A	12.6%	L202Q (CTG→CAG)	PP_5009 →	hypothetical protein
RA	5,709,374	A→G	7.0%	E1131G (GAA→GGA)	PP_5009 →	hypothetical protein
RA	5,709,377	G→C	8.2%	R1132P (CGG→CCG) ‡	PP_5009 →	hypothetical protein
RA	5,709,378	G→C	7.1%	R1132R (CGG→CGC) ‡	PP_5009 →	hypothetical protein
RA	5,709,381	C→T	7.2%	V1133V (GTC→GTT)	PP_5009 →	hypothetical protein
RA	5,711,857	G→A	8.6%	E232E (GAG→GAA)	ubiE →	ubiquinone/menaquinone biosynthesis C‑methyltransferase UbiE
RA	5,711,864	T→C	6.3%	F235L (TTC→CTC)	ubiE →	ubiquinone/menaquinone biosynthesis C‑methyltransferase UbiE
RA	5,715,386	T→A	6.7%	L18Q (CTG→CAG)	tatB →	Sec‑independent protein translocase protein TatB
RA	5,715,389	T→C	6.9%	V19A (GTG→GCG)	tatB →	Sec‑independent protein translocase protein TatB
RA	5,715,396	C→G	8.3%	G21G (GGC→GGG)	tatB →	Sec‑independent protein translocase protein TatB
RA	5,715,397	C→G	8.3%	P22A (CCC→GCC)	tatB →	Sec‑independent protein translocase protein TatB
RA	5,715,404	G→A	12.0%	R24H (CGC→CAC)	tatB →	Sec‑independent protein translocase protein TatB
RA	5,740,457	G→A	18.4%	intergenic (+22/+49)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,467	T→G	34.9%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,470	A→T	26.4%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,471	A→T	26.5%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,474	C→A	24.2%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,741,872	C→A	5.5%	Q94H (CAG→CAT)	PP_5039 ←	hypothetical protein
RA	5,750,398	C→T	9.8%	V389M (GTG→ATG)	thiI ←	tRNA sulfurtransferase
RA	5,750,399	A→G	9.7%	H388H (CAT→CAC)	thiI ←	tRNA sulfurtransferase
RA	5,751,719	G→T	9.6%	intergenic (‑157/‑314)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,725	A→G	9.9%	intergenic (‑163/‑308)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,729	G→T	9.0%	intergenic (‑167/‑304)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,730	G→T	9.4%	intergenic (‑168/‑303)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,753,485	T→G	6.7%	intergenic (+46/‑320)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,753,486	C→A	7.1%	intergenic (+47/‑319)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,766,621	T→C	6.2%	E1417E (GAA→GAG)	PP_5060 ←	hypothetical protein
RA	5,768,453	T→G	6.2%	S807R (AGC→CGC)	PP_5060 ←	hypothetical protein
RA	5,772,152	G→T	6.1%	L271M (CTG→ATG)	betT‑I ←	choline transporter
RA	5,772,157	A→C	6.4%	I269S (ATC→AGC)	betT‑I ←	choline transporter
RA	5,790,133	G→T	13.1%	intergenic (+12/+56)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,137	G→A	11.8%	intergenic (+16/+52)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,143	A→T	11.8%	intergenic (+22/+46)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,150	A→G	12.3%	intergenic (+29/+39)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,151	C→G	13.0%	intergenic (+30/+38)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,152	C→T	12.9%	intergenic (+31/+37)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,159	A→T	9.4%	intergenic (+38/+30)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,165	T→C	8.1%	intergenic (+44/+24)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,169	A→C	7.6%	intergenic (+48/+20)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,792,846	A→C	6.7%	L162R (CTG→CGG)	gltD ←	glutamate synthase subunit beta
RA	5,793,873	T→G	7.1%	T1343P (ACT→CCT)	gltB ←	L‑glutamate synthase subunit alpha
RA	5,793,874	A→T	6.6%	G1342G (GGT→GGA) ‡	gltB ←	L‑glutamate synthase subunit alpha
RA	5,793,875	C→A	9.4%	G1342V (GGT→GTT) ‡	gltB ←	L‑glutamate synthase subunit alpha
RA	5,816,531	C→G	7.7%	A114G (GCC→GGC)	PP_5092 →	NLP/P60 protein
RA	5,819,408	G→T	6.3%	R226L (CGC→CTC)	proI →	pyrroline‑5‑carboxylate reductase
RA	5,845,595:1	+A	7.5%	intergenic (+20/‑82)	coaD → / → yfhL	phosphopantetheine adenylyltransferase/4Fe‑4S cluster‑containing protein
RA	5,845,602	Δ1 bp	8.6%	intergenic (+27/‑75)	coaD → / → yfhL	phosphopantetheine adenylyltransferase/4Fe‑4S cluster‑containing protein
RA	5,849,357	T→G	7.7%	L21R (CTG→CGG)	ilvD →	dihydroxy‑acid dehydratase
RA	5,849,370	C→A	7.8%	T25T (ACC→ACA)	ilvD →	dihydroxy‑acid dehydratase
RA	5,857,702	A→C	6.7%	E84A (GAG→GCG) ‡	PP_5134 →	hypothetical protein
RA	5,857,703	G→T	6.7%	E84D (GAG→GAT) ‡	PP_5134 →	hypothetical protein
RA	5,862,153	G→C	7.0%	N212K (AAC→AAG)	fbpC ←	ABC transporter ATP‑binding protein
RA	5,866,696	G→T	9.4%	intergenic (+19/+38)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,866,697	A→C	9.8%	intergenic (+20/+37)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,944,535	C→T	7.8%	intergenic (‑301/+39)	PP_5211 ← / ← PP_5212	ChaC‑related protein/iron‑sulfur‑binding oxidoreductase
RA	5,944,536	A→T	7.7%	intergenic (‑302/+38)	PP_5211 ← / ← PP_5212	ChaC‑related protein/iron‑sulfur‑binding oxidoreductase
RA	5,944,537	A→G	7.7%	intergenic (‑303/+37)	PP_5211 ← / ← PP_5212	ChaC‑related protein/iron‑sulfur‑binding oxidoreductase
RA	5,948,346	G→T	100%	A43E (GCG→GAG)	rho ←	transcription termination factor Rho
RA	5,955,819	C→A	6.2%	intergenic (+45/+159)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,955,821	A→C	7.4%	intergenic (+47/+157)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,955,825	C→T	6.4%	intergenic (+51/+153)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,955,828	G→C	6.1%	intergenic (+54/+150)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,955,832	C→G	6.1%	intergenic (+58/+146)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,955,836	G→C	7.1%	intergenic (+62/+142)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,955,839	A→G	5.8%	intergenic (+65/+139)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,955,843	G→T	6.0%	intergenic (+69/+135)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,955,845	T→G	5.8%	intergenic (+71/+133)	elbB → / ← PP_5221	putative hydrolase/hypothetical protein
RA	5,956,707	G→C	7.8%	R37R (CGG→CGC)	cyaA →	adenylate cyclase
RA	5,984,436	T→C	12.7%	intergenic (+32/+57)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,442	G→A	9.8%	intergenic (+38/+51)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,444	T→C	11.8%	intergenic (+40/+49)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,447	G→A	10.0%	intergenic (+43/+46)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,449	T→C	9.7%	intergenic (+45/+44)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,455	G→A	10.0%	intergenic (+51/+38)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,700	G→T	6.7%	A140A (GCC→GCA)	ycaC‑II ←	putative hydrolase
RA	5,984,703	A→C	5.8%	D139E (GAT→GAG)	ycaC‑II ←	putative hydrolase
RA	5,984,708	T→G	5.6%	T138P (ACC→CCC)	ycaC‑II ←	putative hydrolase
RA	5,988,809	G→A	13.1%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	16.7%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	16.3%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	16.4%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	16.3%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	16.4%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	18.5%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	18.4%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	18.5%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	21.0%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	22.6%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	23.8%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,889	C→A	29.8%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	30.8%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	29.2%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	30.4%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	29.6%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,997,189:1	+G	10.8%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	5,997,194	Δ1 bp	10.6%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	5,999,561	T→G	6.7%	H32Q (CAT→CAG)	PP_5256 →	cyclic nucleotide‑binding protein
RA	5,999,564	C→A	9.6%	A33A (GCC→GCA)	PP_5256 →	cyclic nucleotide‑binding protein
RA	6,004,987	T→G	7.7%	intergenic (+25/‑151)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,997	A→T	11.3%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,000	G→C	10.9%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,013,836	G→A	40.8%	intergenic (+41/+69)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,838	A→G	40.8%	intergenic (+43/+67)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,845	G→C	40.7%	intergenic (+50/+60)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,846	T→G	40.9%	intergenic (+51/+59)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,847	C→T	40.7%	intergenic (+52/+58)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,852	A→G	39.3%	intergenic (+57/+53)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,853	C→A	35.6%	intergenic (+58/+52)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,854	G→C	42.6%	intergenic (+59/+51)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,861	C→T	38.6%	intergenic (+66/+44)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,863	T→C	38.7%	intergenic (+68/+42)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,035,933	A→G	8.7%	I155V (ATC→GTC) ‡	algC →	phosphomannomutase/phosphoglucomutase
RA	6,035,934	T→A	8.4%	I155N (ATC→AAC) ‡	algC →	phosphomannomutase/phosphoglucomutase
RA	6,035,935	C→T	8.5%	I155I (ATC→ATT) ‡	algC →	phosphomannomutase/phosphoglucomutase
RA	6,041,127	T→A	10.2%	Q17H (CAA→CAT)	PP_5293 ←	hypothetical protein
RA	6,041,133	G→A	9.3%	I15I (ATC→ATT) ‡	PP_5293 ←	hypothetical protein
RA	6,041,135	T→A	9.1%	I15F (ATC→TTC) ‡	PP_5293 ←	hypothetical protein
RA	6,041,137	T→C	9.1%	E14G (GAA→GGA)	PP_5293 ←	hypothetical protein
RA	6,041,143	T→A	8.8%	N12I (AAT→ATT)	PP_5293 ←	hypothetical protein
RA	6,042,502	G→T	8.6%	A147S (GCC→TCC) ‡	PP_5295 →	hypothetical protein
RA	6,042,504	C→G	8.4%	A147A (GCC→GCG) ‡	PP_5295 →	hypothetical protein
RA	6,042,506	A→C	8.5%	D148A (GAC→GCC)	PP_5295 →	hypothetical protein
RA	6,057,540	G→A	5.5%	S246N (AGC→AAC)	recG →	junction‑specific ATP‑dependent DNA helicase
RA	6,067,301	A→T	6.4%	intergenic (+117/‑57)	phoR → / → PP_5322	two‑component system sensor histidine kinase/metal ion transporter
RA	6,067,302	A→T	6.3%	intergenic (+118/‑56)	phoR → / → PP_5322	two‑component system sensor histidine kinase/metal ion transporter
RA	6,067,303	A→T	6.4%	intergenic (+119/‑55)	phoR → / → PP_5322	two‑component system sensor histidine kinase/metal ion transporter
RA	6,067,304	A→T	7.4%	intergenic (+120/‑54)	phoR → / → PP_5322	two‑component system sensor histidine kinase/metal ion transporter
RA	6,070,777	A→T	6.8%	intergenic (‑133/+30)	PP_5324 ← / ← phoU	two‑component system response regulator/phosphate transport‑associated protein
RA	6,070,778	A→T	7.6%	intergenic (‑134/+29)	PP_5324 ← / ← phoU	two‑component system response regulator/phosphate transport‑associated protein
RA	6,083,125	C→T	8.3%	P137P (CCG→CCA)	purE ←	5‑(carboxyamino)imidazole ribonucleotide mutase
RA	6,086,776	A→T	8.0%	M100L (ATG→TTG)	oruR →	ornithine utilization transcriptional regulator
RA	6,087,678	A→G	8.7%	intergenic (+129/‑101)	oruR → / → aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase
RA	6,087,680	A→T	8.4%	intergenic (+131/‑99)	oruR → / → aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase
RA	6,087,682	C→T	8.7%	intergenic (+133/‑97)	oruR → / → aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase
RA	6,103,777	T→G	9.4%	F204V (TTC→GTC) ‡	PP_5353 →	hypothetical protein
RA	6,103,778	T→A	9.4%	F204Y (TTC→TAC) ‡	PP_5353 →	hypothetical protein
RA	6,103,779	C→A	9.5%	F204L (TTC→TTA) ‡	PP_5353 →	hypothetical protein
RA	6,114,219	A→T	6.9%	E450V (GAA→GTA)	clsA →	cardiolipin synthase
RA	6,126,946	A→G	6.0%	intergenic (+37/+30)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,126,947	T→A	6.8%	intergenic (+38/+29)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,126,949	A→G	5.9%	intergenic (+40/+27)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,129,160	A→C	5.0%	intergenic (+22/+45)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,170	C→T	6.3%	intergenic (+32/+35)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,173	A→T	6.5%	intergenic (+35/+32)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,176	A→G	6.5%	intergenic (+38/+29)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,131,456	A→T	5.2%	A22A (GCT→GCA)	copB‑II ←	copper resistance protein B
RA	6,131,459	A→G	7.8%	G21G (GGT→GGC)	copB‑II ←	copper resistance protein B
RA	6,158,981	C→T	10.2%	intergenic (+318/+550)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,158,983	C→G	9.5%	intergenic (+320/+548)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,158,984	T→A	10.1%	intergenic (+321/+547)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,158,985	C→G	10.2%	intergenic (+322/+546)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,158,987	A→G	9.8%	intergenic (+324/+544)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,172,417	C→T	8.8%	W222* (TGG→TAG) ‡	PP_5410 ←	DeoR family transcriptional regulator
RA	6,172,418	A→G	8.1%	W222R (TGG→CGG) ‡	PP_5410 ←	DeoR family transcriptional regulator

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	171379–176304	176304	1–4926	18 [14]	[16] 18	PP_16SA–[PP_5SA]	PP_16SA,PP_23SA,[PP_5SA]
*	*	÷	NC_002947	176652–181685	181685	1–5034	19 [16]	[14] 19	PP_16SB–[PP_r01]	PP_16SB,PP_23SB,[PP_r01]
*	*	÷	NC_002947	1367567	1367827	261	18 [17]	[17] 18	[PP_1193]	[PP_1193]
*	*	÷	NC_002947	2038168	2038420	253	19 [17]	[17] 18	[rffE]	[rffE]
*	*	÷	NC_002947	2837038	2837227	190	18 [16]	[17] 19	[sad‑I]	[sad‑I]
*	*	÷	NC_002947	5905400	5905522	123	18 [16]	[16] 18	spuG	spermidine/putrescine ABC transporter permease

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 65250	77 (1.480)	4 (0.080)	4/258	NT	5.5%	coding (308/1653 nt)	betA‑I	choline dehydrogenase
	?	NC_002947	= 65282	64 (1.270)					coding (340/1653 nt)	betA‑I	choline dehydrogenase
*	?	NC_002947	= 65525	43 (0.830)	3 (0.060)	3/258	NT	5.6%	coding (583/1653 nt)	betA‑I	choline dehydrogenase
	?	NC_002947	= 65595	59 (1.170)					coding (653/1653 nt)	betA‑I	choline dehydrogenase
*	?	NC_002947	= 82053	51 (0.980)	5 (0.100)	4/256	NT	9.8%	intergenic (+30/+98)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase
	?	NC_002947	= 82132	43 (0.860)					intergenic (+109/+19)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase
*	?	NC_002947	137156 =	61 (1.170)	4 (0.080)	4/248	NT	6.7%	coding (57/1608 nt)	PP_0131	membrane‑anchored phosphodiesterase
	?	NC_002947	137214 =	54 (1.110)					coding (115/1608 nt)	PP_0131	membrane‑anchored phosphodiesterase
*	?	NC_002947	= 142358	46 (0.880)	3 (0.060)	3/256	NT	6.0%	coding (302/822 nt)	PP_0134	hypothetical protein
	?	NC_002947	= 142391	50 (1.000)					coding (335/822 nt)	PP_0134	hypothetical protein
*	?	NC_002947	= 153156	73 (1.400)	4 (0.080)	4/256	NT	5.4%	coding (451/1407 nt)	PP_0144	insulinase family metalloprotease
	?	NC_002947	= 153189	71 (1.420)					coding (418/1407 nt)	PP_0144	insulinase family metalloprotease
*	?	NC_002947	= 174906	NA (NA)	4 (0.080)	4/256	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	186030 =	72 (1.380)	4 (0.080)	4/254	NT	6.0%	coding (109/522 nt)	PP_0162	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	186077 =	57 (1.150)					coding (62/522 nt)	PP_0162	ECF family RNA polymerase sigma‑70 factor
*	?	NC_002947	= 201085	67 (1.290)	8 (0.160)	6/258	NT	10.8%	coding (6591/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 201110	67 (1.330)					coding (6616/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	219916 =	59 (1.130)	3 (0.060)	3/258	NT	5.3%	coding (25422/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	219947 =	49 (0.970)					coding (25453/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	241990 =	63 (1.210)	4 (0.080)	4/256	NT	6.7%	coding (1161/1239 nt)	PP_0189	heme biosynthesis protein
	?	NC_002947	242022 =	50 (1.000)					coding (1193/1239 nt)	PP_0189	heme biosynthesis protein
*	?	NC_002947	= 251034	65 (1.250)	4 (0.080)	4/256	NT	6.1%	coding (169/1347 nt)	nfeD	membrane bound peptidase NefD
	?	NC_002947	= 251061	61 (1.220)					coding (142/1347 nt)	nfeD	membrane bound peptidase NefD
*	?	NC_002947	= 251781	44 (0.850)	4 (0.080)	4/252	NT	8.0%	intergenic (+22/‑40)	PP_0201/PP_5432	hypothetical protein/hypothetical protein
	?	NC_002947	= 251799	50 (1.010)					intergenic (+40/‑22)	PP_0201/PP_5432	hypothetical protein/hypothetical protein
*	?	NC_002947	305248 =	33 (0.630)	4 (0.080)	4/256	NT	11.5%	coding (718/795 nt)	PP_0251	membrane protein
	?	NC_002947	305279 =	30 (0.600)					coding (687/795 nt)	PP_0251	membrane protein
*	?	NC_002947	= 346908	33 (0.630)	3 (0.060)	3/254	NT	7.9%	coding (938/2247 nt)	PP_0287	hypothetical protein
	?	NC_002947	= 346932	38 (0.760)					coding (914/2247 nt)	PP_0287	hypothetical protein
*	?	NC_002947	348306 =	56 (1.080)	3 (0.060)	3/258	NT	5.2%	coding (193/1662 nt)	PP_0288	oxalate/formate antiporter
	?	NC_002947	348336 =	56 (1.110)					coding (223/1662 nt)	PP_0288	oxalate/formate antiporter
*	?	NC_002947	362138 =	51 (0.980)	3 (0.060)	3/250	NT	6.7%	coding (369/471 nt)	PP_0301	betainyl‑CoA thiolase
	?	NC_002947	362203 =	36 (0.740)					coding (304/471 nt)	PP_0301	betainyl‑CoA thiolase
*	?	NC_002947	368835 =	55 (1.060)	3 (0.060)	3/256	NT	6.1%	intergenic (‑185/‑86)	PP_0307/PP_0308	hypothetical protein/dipeptidase
	?	NC_002947	368875 =	40 (0.800)					intergenic (‑225/‑46)	PP_0307/PP_0308	hypothetical protein/dipeptidase
*	?	NC_002947	375996 =	47 (0.900)	3 (0.060)	3/248	NT	6.1%	coding (43/771 nt)	PP_0313	electron transfer flavoprotein subunit beta
	?	NC_002947	376052 =	49 (1.010)					coding (99/771 nt)	PP_0313	electron transfer flavoprotein subunit beta
*	?	NC_002947	= 379962	46 (0.880)	4 (0.080)	4/256	NT	8.1%	coding (259/1107 nt)	gbcB	glycine‑betaine dioxygenase subunit
	?	NC_002947	= 380031	47 (0.940)					coding (328/1107 nt)	gbcB	glycine‑betaine dioxygenase subunit
*	?	NC_002947	= 387911	67 (1.290)	4 (0.080)	4/252	NT	6.0%	coding (1051/1254 nt)	glyA‑I	serine hydroxymethyltransferase
	?	NC_002947	= 387950	63 (1.280)					coding (1090/1254 nt)	glyA‑I	serine hydroxymethyltransferase
*	?	NC_002947	= 437616	33 (0.630)	3 (0.060)	3/256	NT	7.8%	coding (744/1008 nt)	rdoA	serine/threonine protein kinase
	?	NC_002947	= 437674	39 (0.780)					coding (686/1008 nt)	rdoA	serine/threonine protein kinase
*	?	NC_002947	= 448279	59 (1.130)	4 (0.080)	3/248	NT	6.4%	coding (858/1284 nt)	PP_0369	diguanylate cyclase
	?	NC_002947	= 448337	62 (1.280)					coding (916/1284 nt)	PP_0369	diguanylate cyclase
*	?	NC_002947	= 457748	62 (1.190)	3 (0.060)	3/252	NT	5.5%	coding (3/1131 nt)	pqqE	coenzyme PQQ synthesis protein E
	?	NC_002947	= 457782	44 (0.890)					coding (246/276 nt)	pqqD‑I	coenzyme PQQ synthesis protein D
*	?	NC_002947	468703 =	61 (1.170)	4 (0.080)	4/246	NT	6.8%	coding (2254/3744 nt)	PP_0386	sensory box protein
	?	NC_002947	468795 =	53 (1.100)					coding (2162/3744 nt)	PP_0386	sensory box protein
*	?	NC_002947	478261 =	33 (0.630)	3 (0.070)	3/206	NT	12.9%	intergenic (+9/+101)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478356 =	15 (0.370)					intergenic (+104/+6)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
*	?	NC_002947	= 543397	61 (1.170)	5 (0.100)	5/256	NT	8.6%	coding (1637/4200 nt)	rpoC	DNA‑directed RNA polymerase subunit beta'
	?	NC_002947	= 543433	47 (0.940)					coding (1673/4200 nt)	rpoC	DNA‑directed RNA polymerase subunit beta'
*	?	NC_002947	553529 =	77 (1.480)	4 (0.080)	3/256	NT	5.8%	coding (75/276 nt)	rpsS	30S ribosomal protein S19
	?	NC_002947	553568 =	57 (1.140)					coding (114/276 nt)	rpsS	30S ribosomal protein S19
*	?	NC_002947	= 614297	20 (0.380)	5 (0.130)	4/204	NT	23.1%	intergenic (‑116/+62)	dxs/ispA	1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase
	?	NC_002947	= 614313	18 (0.450)					intergenic (‑132/+46)	dxs/ispA	1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase
*	?	NC_002947	= 632730	52 (1.000)	4 (0.080)	4/244	NT	7.4%	coding (711/1521 nt)	aldB‑I	aldehyde dehydrogenase
	?	NC_002947	= 632764	52 (1.090)					coding (677/1521 nt)	aldB‑I	aldehyde dehydrogenase
*	?	NC_002947	= 639414	49 (0.940)	5 (0.100)	4/250	NT	9.3%	coding (1331/1929 nt)	PP_0551	MORN domain‑containing protein
	?	NC_002947	= 639443	51 (1.040)					coding (1302/1929 nt)	PP_0551	MORN domain‑containing protein
*	?	NC_002947	674322 =	42 (0.810)	3 (0.060)	3/248	NT	7.6%	intergenic (‑214/+92)	PP_0575/PP_0576	membrane protein/lipoprotein
	?	NC_002947	674363 =	34 (0.700)					intergenic (‑255/+51)	PP_0575/PP_0576	membrane protein/lipoprotein
*	?	NC_002947	692389 =	61 (1.170)	3 (0.060)	3/248	NT	5.3%	coding (726/744 nt)	PP_0594	TetR family transcriptional regulator
	?	NC_002947	692466 =	51 (1.050)					coding (649/744 nt)	PP_0594	TetR family transcriptional regulator
*	?	NC_002947	724297 =	51 (0.980)	3 (0.060)	3/260	NT	5.6%	coding (334/861 nt)	PP_0618	branched‑chain amino acid ABC transporter permease
	?	NC_002947	724330 =	52 (1.020)					coding (301/861 nt)	PP_0618	branched‑chain amino acid ABC transporter permease
*	?	NC_002947	736141 =	58 (1.110)	3 (0.060)	3/256	NT	5.4%	coding (196/630 nt)	PP_0628	hypothetical protein
	?	NC_002947	736183 =	50 (1.000)					coding (154/630 nt)	PP_0628	hypothetical protein
*	?	NC_002947	= 746418	NA (NA)	4 (0.080)	3/256	NT	NA	coding (81/1533 nt)	PP_0637	transposase
	?	NC_002947	= 746464	NA (NA)					coding (35/1533 nt)	PP_0637	transposase
*	?	NC_002947	747103 =	66 (1.270)	5 (0.100)	3/250	NT	7.9%	intergenic (‑230/‑564)	PP_0638/PP_5448	transposase/hypothetical protein
	?	NC_002947	747144 =	54 (1.100)					intergenic (‑271/‑523)	PP_0638/PP_5448	transposase/hypothetical protein
*	?	NC_002947	778033 =	57 (1.090)	4 (0.080)	4/258	NT	6.7%	coding (1083/2433 nt)	PP_0669	ferric siderophore receptor
	?	NC_002947	778082 =	57 (1.130)					coding (1132/2433 nt)	PP_0669	ferric siderophore receptor
*	?	NC_002947	= 818297	57 (1.090)	4 (0.080)	4/252	NT	7.1%	coding (379/516 nt)	PP_0704	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	= 818339	51 (1.030)					coding (337/516 nt)	PP_0704	ECF family RNA polymerase sigma‑70 factor
*	?	NC_002947	853271 =	42 (0.810)	3 (0.060)	3/252	NT	7.0%	coding (776/1083 nt)	prfA	peptide chain release factor 1
	?	NC_002947	853322 =	40 (0.810)					coding (827/1083 nt)	prfA	peptide chain release factor 1
*	?	NC_002947	= 890890	51 (0.980)	3 (0.060)	3/252	NT	5.6%	coding (54/711 nt)	yiaD	OmpA/MotB domain‑containing protein
	?	NC_002947	= 890919	53 (1.080)					coding (83/711 nt)	yiaD	OmpA/MotB domain‑containing protein
*	?	NC_002947	896262 =	48 (0.920)	4 (0.080)	4/256	NT	8.3%	coding (153/1191 nt)	PP_0778	group 1 family glycosyl transferase
	?	NC_002947	896342 =	42 (0.840)					coding (73/1191 nt)	PP_0778	group 1 family glycosyl transferase
*	?	NC_002947	= 914212	47 (0.900)	5 (0.100)	5/254	NT	9.5%	coding (923/1743 nt)	fruA	PTS fructose transporter subunit IIBC
	?	NC_002947	= 914238	50 (1.010)					coding (949/1743 nt)	fruA	PTS fructose transporter subunit IIBC
*	?	NC_002947	= 942370	52 (1.000)	4 (0.080)	3/258	NT	7.0%	coding (3252/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 942386	56 (1.110)					coding (3236/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 965454	45 (0.860)	4 (0.080)	4/250	NT	9.5%	coding (436/768 nt)	ptxC	phosphonate transport system permease PtxC
	?	NC_002947	= 965474	34 (0.700)					coding (456/768 nt)	ptxC	phosphonate transport system permease PtxC
*	?	NC_002947	= 981623	36 (0.690)	6 (0.120)	6/254	NT	13.7%	coding (500/1863 nt)	hscA	DnaK‑like molecular chaperone
	?	NC_002947	= 981649	41 (0.830)					coding (526/1863 nt)	hscA	DnaK‑like molecular chaperone
*	?	NC_002947	= 993809	54 (1.040)	3 (0.060)	3/252	NT	5.6%	coding (816/1149 nt)	PP_0858	methionine/glutamine aminotransferase
	?	NC_002947	= 993862	50 (1.010)					coding (869/1149 nt)	PP_0858	methionine/glutamine aminotransferase
*	?	NC_002947	1015520 =	45 (0.860)	3 (0.060)	3/248	NT	6.6%	coding (721/1431 nt)	PP_0875	hypothetical protein
	?	NC_002947	1015571 =	43 (0.890)					coding (670/1431 nt)	PP_0875	hypothetical protein
*	?	NC_002947	1027776 =	63 (1.210)	5 (0.100)	5/256	NT	7.5%	coding (964/1626 nt)	dppA‑III	dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1027815 =	63 (1.260)					coding (925/1626 nt)	dppA‑III	dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	1032587 =	65 (1.250)	3 (0.060)	3/252	NT	5.0%	coding (681/1137 nt)	PP_0889	hypothetical protein
	?	NC_002947	1032621 =	52 (1.050)					coding (715/1137 nt)	PP_0889	hypothetical protein
*	?	NC_002947	= 1034946	45 (0.860)	3 (0.060)	3/252	NT	6.3%	coding (983/1158 nt)	PP_0892	phospholipase family protein
	?	NC_002947	= 1034981	46 (0.930)					coding (1018/1158 nt)	PP_0892	phospholipase family protein
*	?	NC_002947	= 1039804	61 (1.170)	4 (0.080)	4/252	NT	6.1%	coding (161/921 nt)	PP_0899	ferredoxin reductase
	?	NC_002947	= 1039846	65 (1.320)					coding (203/921 nt)	PP_0899	ferredoxin reductase
*	?	NC_002947	1042214 =	53 (1.020)	4 (0.080)	4/252	NT	7.2%	coding (24/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase
	?	NC_002947	1042255 =	53 (1.080)					coding (65/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase
*	?	NC_002947	1095385 =	57 (1.090)	4 (0.080)	4/252	NT	6.3%	coding (676/1494 nt)	rpoN	RNA polymerase sigma‑54 factor
	?	NC_002947	1095440 =	66 (1.340)					coding (621/1494 nt)	rpoN	RNA polymerase sigma‑54 factor
*	?	NC_002947	1160522 =	31 (0.600)	3 (0.060)	3/258	NT	7.6%	coding (334/846 nt)	gtsC	mannose/glucose ABC transporter permease
	?	NC_002947	1160576 =	43 (0.850)					coding (388/846 nt)	gtsC	mannose/glucose ABC transporter permease
*	?	NC_002947	= 1172789	59 (1.130)	4 (0.080)	3/252	NT	6.5%	coding (264/1380 nt)	xseA	exodeoxyribonuclease 7 large subunit
	?	NC_002947	= 1172829	60 (1.220)					coding (224/1380 nt)	xseA	exodeoxyribonuclease 7 large subunit
*	?	NC_002947	= 1195376	40 (0.770)	4 (0.080)	4/248	NT	9.5%	coding (1515/1653 nt)	uxpA	lipoprotein UxpA
	?	NC_002947	= 1195402	39 (0.800)					coding (1541/1653 nt)	uxpA	lipoprotein UxpA
*	?	NC_002947	1196535 =	63 (1.210)	3 (0.060)	3/250	NT	5.2%	coding (596/1755 nt)	xcpQ	type II secretion pathway protein XcpQ
	?	NC_002947	1196595 =	50 (1.020)					coding (656/1755 nt)	xcpQ	type II secretion pathway protein XcpQ
*	?	NC_002947	1204553 =	54 (1.040)	4 (0.080)	4/254	NT	7.2%	coding (671/762 nt)	PP_1056	iron‑chelator utilization protein
	?	NC_002947	1204591 =	52 (1.050)					coding (633/762 nt)	PP_1056	iron‑chelator utilization protein
*	?	NC_002947	1225841 =	60 (1.150)	4 (0.080)	4/254	NT	7.0%	coding (650/921 nt)	gltI	glutamate/aspartate ABC transporter substrate‑binding protein
	?	NC_002947	1225900 =	49 (0.990)					coding (591/921 nt)	gltI	glutamate/aspartate ABC transporter substrate‑binding protein
*	?	NC_002947	= 1252645	44 (0.850)	3 (0.060)	3/256	NT	7.0%	coding (165/972 nt)	PP_1095	electron transport complex protein
	?	NC_002947	= 1252684	37 (0.740)					coding (126/972 nt)	PP_1095	electron transport complex protein
*	?	NC_002947	1256376 =	43 (0.830)	4 (0.080)	4/250	NT	8.6%	coding (718/1095 nt)	mrp	ATP‑dependent Fe‑S cluster transferase
	?	NC_002947	1256462 =	45 (0.920)					coding (804/1095 nt)	mrp	ATP‑dependent Fe‑S cluster transferase
*	?	NC_002947	1264265 =	63 (1.210)	3 (0.060)	3/244	NT	5.2%	coding (142/1659 nt)	PP_1105	ATP‑dependent DNA ligase
	?	NC_002947	1264318 =	51 (1.070)					coding (89/1659 nt)	PP_1105	ATP‑dependent DNA ligase
*	?	NC_002947	1288899 =	61 (1.170)	5 (0.100)	5/252	NT	8.0%	coding (172/2349 nt)	PP_1126	hydrolase
	?	NC_002947	1288937 =	57 (1.160)					coding (210/2349 nt)	PP_1126	hydrolase
*	?	NC_002947	1296784 =	NA (NA)	9 (0.180)	8/252	NT	NA	intergenic (‑537/‑29)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296822 =	NA (NA)					coding (10/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1297091	NA (NA)	3 (0.060)	3/252	NT	NA	coding (279/1329 nt)	PP_1133	transposase
	?	NC_002947	= 1297143	NA (NA)					coding (331/1329 nt)	PP_1133	transposase
*	?	NC_002947	1312668 =	52 (1.000)	4 (0.080)	4/248	NT	7.1%	coding (1989/2847 nt)	rapA	RNA polymerase‑associated protein RapA
	?	NC_002947	1312776 =	56 (1.150)					coding (1881/2847 nt)	rapA	RNA polymerase‑associated protein RapA
*	?	NC_002947	1330937 =	NA (NA)	5 (0.100)	4/256	NT	NA	coding (162/1644 nt)	PP_1157	acetolactate synthase
	?	NC_002947	1330981 =	NA (NA)					coding (206/1644 nt)	PP_1157	acetolactate synthase
*	?	NC_002947	= 1366340	60 (1.150)	4 (0.080)	4/262	NT	5.9%	coding (360/711 nt)	PP_1191	S4 domain‑containing protein
	?	NC_002947	= 1366386	69 (1.350)					coding (314/711 nt)	PP_1191	S4 domain‑containing protein
*	?	NC_002947	1404731 =	46 (0.880)	3 (0.060)	3/252	NT	6.5%	coding (951/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer
	?	NC_002947	1404824 =	43 (0.870)					coding (858/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer
*	?	NC_002947	1411088 =	59 (1.130)	3 (0.060)	3/258	NT	5.1%	coding (847/1437 nt)	PP_1232	hypothetical protein
	?	NC_002947	1411125 =	54 (1.070)					coding (810/1437 nt)	PP_1232	hypothetical protein
*	?	NC_002947	1415327 =	35 (0.670)	3 (0.060)	3/252	NT	7.5%	coding (600/888 nt)	dapA‑I	4‑hydroxy‑tetrahydrodipicolinate synthase
	?	NC_002947	1415401 =	41 (0.830)					coding (674/888 nt)	dapA‑I	4‑hydroxy‑tetrahydrodipicolinate synthase
*	?	NC_002947	= 1419549	14 (0.270)	15 (0.290)	11/260	NT	45.0%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419636	23 (0.450)					intergenic (‑125/+11)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	1441690 =	NA (NA)	5 (0.120) +30 bp	3/206	NT	12.6%	intergenic (+34/+398)	PP_1260/ghrB	transposase/2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase
	?	NC_002947	= 2301586	45 (0.860)					intergenic (‑230/‑101)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
*	?	NC_002947	= 1447789	56 (1.080)	4 (0.080)	3/256	NT	7.1%	coding (1887/2178 nt)	PP_1264	fusaric acid resistance protein
	?	NC_002947	= 1447823	51 (1.020)					coding (1921/2178 nt)	PP_1264	fusaric acid resistance protein
*	?	NC_002947	= 1450275	63 (1.210)	7 (0.140)	7/254	NT	9.9%	coding (269/447 nt)	PP_1269	universal stress protein family protein
	?	NC_002947	= 1450296	67 (1.350)					coding (248/447 nt)	PP_1269	universal stress protein family protein
*	?	NC_002947	= 1463791	54 (1.040)	5 (0.100)	5/256	NT	8.9%	coding (391/1116 nt)	algL	alginate lyase
	?	NC_002947	= 1463803	51 (1.020)					coding (379/1116 nt)	algL	alginate lyase
*	?	NC_002947	1487006 =	45 (0.860)	4 (0.100)	4/206	NT	13.4%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487096 =	17 (0.420)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	1490726 =	48 (0.920)	3 (0.060)	3/254	NT	5.8%	coding (389/1902 nt)	cysNC	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
	?	NC_002947	1490781 =	51 (1.030)					coding (444/1902 nt)	cysNC	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
*	?	NC_002947	1523197 =	52 (1.000)	4 (0.080)	4/254	NT	8.5%	coding (1105/1215 nt)	ftsW	lipid II flippase
	?	NC_002947	1523241 =	36 (0.720)					coding (1149/1215 nt)	ftsW	lipid II flippase
*	?	NC_002947	= 1557369	68 (1.310)	4 (0.080)	4/254	NT	6.1%	coding (804/993 nt)	PP_1368	glycosyltransferase domain‑containing protein
	?	NC_002947	= 1557391	59 (1.190)					coding (782/993 nt)	PP_1368	glycosyltransferase domain‑containing protein
*	?	NC_002947	= 1591654	58 (1.110)	3 (0.060)	3/256	NT	5.2%	coding (240/921 nt)	PP_1395	AraC family transcriptional regulator
	?	NC_002947	= 1591667	53 (1.060)					coding (227/921 nt)	PP_1395	AraC family transcriptional regulator
*	?	NC_002947	= 1592147	54 (1.040)	4 (0.080)	4/254	NT	7.1%	coding (52/294 nt)	PP_1396	hypothetical protein
	?	NC_002947	= 1592195	53 (1.070)					coding (100/294 nt)	PP_1396	hypothetical protein
*	?	NC_002947	1605184 =	56 (1.080)	3 (0.060)	3/252	NT	5.6%	coding (1067/1707 nt)	PP_1407	sulfate transporter
	?	NC_002947	1605222 =	49 (0.990)					coding (1029/1707 nt)	PP_1407	sulfate transporter
*	?	NC_002947	1607679 =	29 (0.560)	5 (0.100)	5/252	NT	15.3%	intergenic (‑146/+198)	PP_1408/rsuA	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase
	?	NC_002947	1607722 =	28 (0.570)					intergenic (‑189/+155)	PP_1408/rsuA	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase
*	?	NC_002947	= 1612861	55 (1.060)	4 (0.080)	4/246	NT	7.5%	coding (658/693 nt)	ung	uracil‑DNA glycosylase
	?	NC_002947	= 1612883	48 (1.000)					coding (680/693 nt)	ung	uracil‑DNA glycosylase
*	?	NC_002947	1615023 =	63 (1.210)	5 (0.100)	5/258	NT	8.3%	coding (729/1056 nt)	PP_1415	membrane protein
	?	NC_002947	1615099 =	49 (0.970)					coding (653/1056 nt)	PP_1415	membrane protein
*	?	NC_002947	1618044 =	53 (1.020)	3 (0.060)	3/258	NT	5.2%	coding (855/981 nt)	PP_1418	tricarboxylate transport protein TctC
	?	NC_002947	1618084 =	57 (1.130)					coding (815/981 nt)	PP_1418	tricarboxylate transport protein TctC
*	?	NC_002947	= 1635694	51 (0.980)	4 (0.090)	4/232	NT	8.6%	intergenic (+40/‑130)	era/recO	GTPase Era/DNA repair protein RecO
	?	NC_002947	= 1635764	41 (0.900)					intergenic (+110/‑60)	era/recO	GTPase Era/DNA repair protein RecO
*	?	NC_002947	1652813 =	55 (1.060)	3 (0.060)	3/258	NT	5.4%	coding (3956/4527 nt)	PP_1449	hypothetical protein
	?	NC_002947	1652859 =	52 (1.030)					coding (3910/4527 nt)	PP_1449	hypothetical protein
*	?	NC_002947	1672445 =	48 (0.920)	3 (0.060)	3/256	NT	6.2%	coding (444/1806 nt)	PP_1467	NhaP‑type Na+(K+)/H+ antiporter
	?	NC_002947	1672488 =	45 (0.900)					coding (401/1806 nt)	PP_1467	NhaP‑type Na+(K+)/H+ antiporter
*	?	NC_002947	= 1680339	55 (1.060)	3 (0.060)	3/256	NT	5.4%	coding (462/1200 nt)	PP_1475	CAIB/BAIF family protein
	?	NC_002947	= 1680373	53 (1.060)					coding (428/1200 nt)	PP_1475	CAIB/BAIF family protein
*	?	NC_002947	= 1715280	52 (1.000)	3 (0.060)	3/254	NT	5.1%	coding (226/831 nt)	PP_1510	carboxyvinyl‑carboxyphosphonate phosphorylmutase
	?	NC_002947	= 1715308	61 (1.230)					coding (254/831 nt)	PP_1510	carboxyvinyl‑carboxyphosphonate phosphorylmutase
*	?	NC_002947	= 1717676	52 (1.000)	4 (0.080)	4/252	NT	7.3%	coding (375/777 nt)	rsmJ	ribosomal RNA small subunit methyltransferase J
	?	NC_002947	= 1717706	52 (1.050)					coding (405/777 nt)	rsmJ	ribosomal RNA small subunit methyltransferase J
*	?	NC_002947	= 1723453	65 (1.250)	5 (0.100)	4/254	NT	7.6%	coding (2086/3066 nt)	PP_1517	RND family transporter
	?	NC_002947	= 1723478	60 (1.210)					coding (2111/3066 nt)	PP_1517	RND family transporter
*	?	NC_002947	= 1732985	68 (1.310)	4 (0.080)	4/256	NT	5.4%	coding (885/2592 nt)	PP_1526	beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1733009	74 (1.480)					coding (861/2592 nt)	PP_1526	beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	1804372 =	49 (0.940)	4 (0.080)	4/252	NT	8.6%	coding (725/948 nt)	accA	acetyl‑CoA carboxylase carboxyltransferase subunit alpha
	?	NC_002947	1804413 =	39 (0.790)					coding (766/948 nt)	accA	acetyl‑CoA carboxylase carboxyltransferase subunit alpha
*	?	NC_002947	1806763 =	43 (0.830)	3 (0.060)	3/254	NT	7.3%	coding (446/1629 nt)	pyrG	CTP synthase
	?	NC_002947	1806797 =	35 (0.700)					coding (480/1629 nt)	pyrG	CTP synthase
*	?	NC_002947	1812747 =	59 (1.130)	3 (0.060)	3/254	NT	5.4%	coding (226/1116 nt)	frmA	glutathione‑dependent formaldehyde dehydrogenase
	?	NC_002947	1812797 =	48 (0.970)					coding (276/1116 nt)	frmA	glutathione‑dependent formaldehyde dehydrogenase
*	?	NC_002947	1815303 =	52 (1.000)	3 (0.060)	3/256	NT	5.4%	coding (221/1059 nt)	truD	tRNA pseudouridine(13) synthase TruD
	?	NC_002947	1815339 =	56 (1.120)					coding (257/1059 nt)	truD	tRNA pseudouridine(13) synthase TruD
*	?	NC_002947	= 1821476	NA (NA)	11 (0.220)	5/252	NT	NA	coding (1239/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2070847	NA (NA)					coding (1221/1422 nt)	PP_1846	group II intron‑encoding maturase
*	?	NC_002947	= 1831626	52 (1.000)	4 (0.080)	4/252	NT	7.3%	coding (505/711 nt)	yfiP	hypothetical protein
	?	NC_002947	= 1831644	53 (1.080)					coding (523/711 nt)	yfiP	hypothetical protein
*	?	NC_002947	1833038 =	74 (1.420)	5 (0.100)	5/252	NT	7.8%	coding (303/366 nt)	dgkA‑I	diacylglycerol kinase
	?	NC_002947	1833078 =	48 (0.970)					coding (343/366 nt)	dgkA‑I	diacylglycerol kinase
*	?	NC_002947	= 1910479	49 (0.940)	3 (0.060)	3/250	NT	6.1%	coding (333/1341 nt)	PP_1710	phthalate permease family MFS transporter
	?	NC_002947	= 1910564	47 (0.960)					coding (248/1341 nt)	PP_1710	phthalate permease family MFS transporter
*	?	NC_002947	= 1924569	68 (1.310)	4 (0.080)	4/256	NT	5.8%	coding (300/840 nt)	PP_1724	2‑aminoethylphosphonate ABC transporter permease
	?	NC_002947	= 1924589	65 (1.300)					coding (280/840 nt)	PP_1724	2‑aminoethylphosphonate ABC transporter permease
*	?	NC_002947	1931789 =	61 (1.170)	5 (0.100)	5/252	NT	8.5%	intergenic (‑62/+109)	apeB/rluA	M18 family aminopeptidase/bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA
	?	NC_002947	1931876 =	50 (1.010)					intergenic (‑149/+22)	apeB/rluA	M18 family aminopeptidase/bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA
*	?	NC_002947	= 2014482	34 (0.650)	3 (0.060)	3/254	NT	8.6%	coding (1006/1443 nt)	PP_1794	hypothetical protein
	?	NC_002947	= 2014522	31 (0.620)					coding (966/1443 nt)	PP_1794	hypothetical protein
*	?	NC_002947	= 2049203	49 (0.940)	3 (0.060)	3/254	NT	6.0%	coding (69/372 nt)	PP_1822	hypothetical protein
	?	NC_002947	= 2049243	48 (0.970)					coding (29/372 nt)	PP_1822	hypothetical protein
*	?	NC_002947	2076009 =	50 (0.960)	5 (0.100)	4/252	NT	9.4%	coding (525/879 nt)	PP_5479	LysR family transcriptional regulator
	?	NC_002947	2076057 =	49 (0.990)					coding (573/879 nt)	PP_5479	LysR family transcriptional regulator
*	?	NC_002947	2082746 =	41 (0.790)	3 (0.060)	3/258	NT	6.9%	coding (488/954 nt)	PP_1861	LysR family transcriptional regulator
	?	NC_002947	2082808 =	41 (0.810)					coding (426/954 nt)	PP_1861	LysR family transcriptional regulator
*	?	NC_002947	2085881 =	NA (NA)	5 (0.100)	4/260	NT	NA	intergenic (+590/‑5)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	2085920 =	NA (NA)					coding (35/1302 nt)	PP_1865	transposase
*	?	NC_002947	2086243 =	NA (NA)	3 (0.060)	3/250	NT	NA	coding (358/1302 nt)	PP_1865	transposase
	?	NC_002947	2086305 =	NA (NA)					coding (420/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2086250	NA (NA)	7 (0.140)	6/250	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2086296	NA (NA)					coding (411/1302 nt)	PP_1865	transposase
*	?	NC_002947	2086731 =	NA (NA)	8 (0.160)	7/250	NT	NA	coding (846/1302 nt)	PP_1865	transposase
	?	NC_002947	2086762 =	NA (NA)					coding (877/1302 nt)	PP_1865	transposase
*	?	NC_002947	2092305 =	68 (1.310)	4 (0.080)	4/254	NT	6.4%	coding (1631/1680 nt)	deaD	ATP‑dependent DEAD‑box RNA helicase DeaD
	?	NC_002947	2092349 =	53 (1.070)					coding (1675/1680 nt)	deaD	ATP‑dependent DEAD‑box RNA helicase DeaD
*	?	NC_002947	= 2099982	13 (0.250)	6 (0.140)	5/220	NT	27.4%	intergenic (‑93/‑112)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2100031	21 (0.490)					intergenic (‑142/‑63)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	= 2134397	53 (1.020)	5 (0.100)	5/256	NT	7.9%	coding (2354/2448 nt)	fadE	medium‑long chain acyl‑CoA dehydrogenase
	?	NC_002947	= 2134461	66 (1.320)					coding (2290/2448 nt)	fadE	medium‑long chain acyl‑CoA dehydrogenase
*	?	NC_002947	2234201 =	55 (1.060)	3 (0.060)	3/254	NT	6.0%	coding (405/1197 nt)	tyrB	aromatic amino acid aminotransferase
	?	NC_002947	2234237 =	42 (0.850)					coding (369/1197 nt)	tyrB	aromatic amino acid aminotransferase
*	?	NC_002947	= 2295510	43 (0.830)	3 (0.060)	3/256	NT	6.0%	intergenic (+55/‑68)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein
	?	NC_002947	= 2295563	52 (1.040)					intergenic (+108/‑15)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein
*	?	NC_002947	2296807 =	48 (0.920)	5 (0.100)	5/258	NT	9.9%	coding (3315/3645 nt)	sbcC	exonuclease subunit SbcC
	?	NC_002947	2296861 =	44 (0.870)					coding (3261/3645 nt)	sbcC	exonuclease subunit SbcC
*	?	NC_002947	2301453 =	0 (0.000)	24 (0.470)	23/260	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	39 (0.760)	36/262	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	2310524 =	46 (0.880)	4 (0.080)	4/246	NT	8.6%	coding (275/1311 nt)	PP_2033	hypothetical protein
	?	NC_002947	2310581 =	42 (0.870)					coding (332/1311 nt)	PP_2033	hypothetical protein
*	?	NC_002947	= 2357676	31 (0.600)	4 (0.080)	4/256	NT	11.1%	coding (635/825 nt)	PP_2072	AraC family transcriptional regulator
	?	NC_002947	= 2357710	34 (0.680)					coding (601/825 nt)	PP_2072	AraC family transcriptional regulator
*	?	NC_002947	2421535 =	34 (0.650)	3 (0.060)	3/258	NT	7.8%	coding (346/540 nt)	moaB‑I	molybdenum cofactor biosynthesis protein B
	?	NC_002947	2421599 =	38 (0.750)					coding (410/540 nt)	moaB‑I	molybdenum cofactor biosynthesis protein B
*	?	NC_002947	= 2440084	52 (1.000)	3 (0.060)	3/248	NT	5.2%	coding (825/1176 nt)	pcaF‑II	beta‑ketoadipyl‑CoA thiolase subunit beta
	?	NC_002947	= 2440124	61 (1.260)					coding (865/1176 nt)	pcaF‑II	beta‑ketoadipyl‑CoA thiolase subunit beta
*	?	NC_002947	2453996 =	57 (1.090)	3 (0.060)	3/254	NT	5.3%	coding (1123/3450 nt)	mfd	transcription‑repair coupling factor
	?	NC_002947	2454041 =	53 (1.070)					coding (1078/3450 nt)	mfd	transcription‑repair coupling factor
*	?	NC_002947	2460351 =	47 (0.900)	5 (0.100)	4/250	NT	10.7%	coding (453/480 nt)	PP_2153	hypothetical protein
	?	NC_002947	2460402 =	39 (0.800)					coding (402/480 nt)	PP_2153	hypothetical protein
*	?	NC_002947	= 2505333	32 (0.610)	4 (0.080)	4/252	NT	10.6%	coding (1120/1146 nt)	yliI	aldose sugar dehydrogenase
	?	NC_002947	= 2505360	37 (0.750)					intergenic (+1/‑41)	yliI/PP_2199	aldose sugar dehydrogenase/hypothetical protein
*	?	NC_002947	2557455 =	57 (1.090)	4 (0.080)	3/256	NT	7.2%	intergenic (‑145/‑286)	PP_2241/fepA	MFS transporter/ferric enterobactin transport system outer membrane subunit
	?	NC_002947	2557492 =	49 (0.980)					intergenic (‑182/‑249)	PP_2241/fepA	MFS transporter/ferric enterobactin transport system outer membrane subunit
*	?	NC_002947	2593807 =	58 (1.110)	4 (0.080)	4/254	NT	7.2%	coding (305/411 nt)	PP_5509	hypothetical protein
	?	NC_002947	2593864 =	47 (0.950)					coding (362/411 nt)	PP_5509	hypothetical protein
*	?	NC_002947	2614423 =	54 (1.040)	3 (0.060)	3/252	NT	5.9%	coding (3362/4710 nt)	PP_2287	internal core protein
	?	NC_002947	2614489 =	44 (0.890)					coding (3428/4710 nt)	PP_2287	internal core protein
*	?	NC_002947	= 2633732	38 (0.730)	3 (0.060)	3/250	NT	7.0%	coding (194/1872 nt)	PP_2304	peptidyl‑prolyl cis‑trans isomerase D
	?	NC_002947	= 2633767	44 (0.900)					coding (229/1872 nt)	PP_2304	peptidyl‑prolyl cis‑trans isomerase D
*	?	NC_002947	= 2640361	66 (1.270)	4 (0.080)	4/248	NT	5.9%	coding (296/1479 nt)	PP_2310	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 2640397	66 (1.360)					coding (260/1479 nt)	PP_2310	methyl‑accepting chemotaxis transducer
*	?	NC_002947	2647129 =	51 (0.980)	3 (0.060)	3/248	NT	6.8%	coding (185/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	2647187 =	35 (0.720)					coding (127/2499 nt)	PP_2316	ABC transporter permease
*	?	NC_002947	= 2801167	40 (0.770)	3 (0.060)	3/250	NT	7.1%	coding (510/960 nt)	rbsB	ribose ABC transporter, periplasmic ribose‑binding subunit
	?	NC_002947	= 2801191	41 (0.840)					coding (534/960 nt)	rbsB	ribose ABC transporter, periplasmic ribose‑binding subunit
*	?	NC_002947	2807026 =	45 (0.860)	3 (0.060)	3/250	NT	6.5%	coding (400/969 nt)	Nuh	ribonucleoside hydrolase
	?	NC_002947	2807079 =	44 (0.900)					coding (453/969 nt)	Nuh	ribonucleoside hydrolase
*	?	NC_002947	2814961 =	52 (1.000)	3 (0.060)	3/250	NT	6.0%	coding (1098/2382 nt)	pheT	phenylalanine‑‑tRNA ligase subunit beta
	?	NC_002947	2815002 =	45 (0.920)					coding (1139/2382 nt)	pheT	phenylalanine‑‑tRNA ligase subunit beta
*	?	NC_002947	2844866 =	50 (0.960)	3 (0.060)	3/250	NT	6.4%	coding (883/1029 nt)	PP_2496	hypothetical protein
	?	NC_002947	2844913 =	41 (0.840)					coding (836/1029 nt)	PP_2496	hypothetical protein
*	?	NC_002947	2845382 =	37 (0.710)	4 (0.080)	4/254	NT	10.3%	coding (367/1029 nt)	PP_2496	hypothetical protein
	?	NC_002947	2845422 =	34 (0.680)					coding (327/1029 nt)	PP_2496	hypothetical protein
*	?	NC_002947	2915352 =	27 (0.520)	3 (0.060)	3/254	NT	8.2%	coding (4372/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
	?	NC_002947	2915460 =	41 (0.830)					coding (4480/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
*	?	NC_002947	= 2936886	57 (1.090)	3 (0.060)	3/250	NT	5.5%	coding (920/1677 nt)	PP_2569	MHS family metabolite MFS transporter
	?	NC_002947	= 2936914	49 (1.000)					coding (948/1677 nt)	PP_2569	MHS family metabolite MFS transporter
*	?	NC_002947	2990163 =	29 (0.560)	3 (0.060)	3/254	NT	7.1%	coding (1317/2169 nt)	vgrG‑I	type VI secretion system protein
	?	NC_002947	= 4612508	51 (1.030)					intergenic (+1470/‑637)	hcpC‑II/PP_4084	hemolysin‑coregulated protein/hypothetical protein
*	?	NC_002947	3010263 =	46 (0.880)	3 (0.060)	3/250	NT	6.7%	intergenic (‑1169/‑499)	PP_2628/PP_2631	ABC transporter ATP‑binding protein/cellulose biosynthesis protein BcsF/YhjT
	?	NC_002947	3010295 =	41 (0.840)					intergenic (‑1201/‑467)	PP_2628/PP_2631	ABC transporter ATP‑binding protein/cellulose biosynthesis protein BcsF/YhjT
*	?	NC_002947	3011750 =	44 (0.850)	4 (0.080)	4/260	NT	9.2%	coding (811/1614 nt)	bcsG	endoglucanase
	?	NC_002947	3011789 =	36 (0.710)					coding (850/1614 nt)	bcsG	endoglucanase
*	?	NC_002947	= 3052482	52 (1.000)	3 (0.060)	3/254	NT	5.7%	coding (1182/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3052535	49 (0.990)					coding (1235/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 3059857	40 (0.770)	6 (0.120)	4/250	NT	14.0%	coding (1136/1275 nt)	PP_2671	sensor histidine kinase
	?	NC_002947	= 3059911	36 (0.740)					coding (1190/1275 nt)	PP_2671	sensor histidine kinase
*	?	NC_002947	3068814 =	50 (0.960)	5 (0.100)	3/250	NT	9.4%	intergenic (+65/‑98)	qedH‑II/aldB‑II	quinoprotein ethanol dehydrogenase/aldehyde dehydrogenase
	?	NC_002947	3068855 =	49 (1.000)					intergenic (+106/‑57)	qedH‑II/aldB‑II	quinoprotein ethanol dehydrogenase/aldehyde dehydrogenase
*	?	NC_002947	= 3073066	54 (1.040)	4 (0.080)	4/256	NT	6.6%	coding (772/1671 nt)	PP_2683	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3073109	61 (1.220)					coding (815/1671 nt)	PP_2683	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 3101333	37 (0.710)	4 (0.080)	4/252	NT	10.7%	coding (634/681 nt)	PP_2710	hypothetical protein
	?	NC_002947	= 3101419	32 (0.650)					coding (53/807 nt)	PP_2711	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	3101541 =	47 (0.900)	5 (0.100)	5/254	NT	10.5%	coding (175/807 nt)	PP_2711	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	3101574 =	40 (0.800)					coding (208/807 nt)	PP_2711	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	3174829 =	34 (0.650)	4 (0.080)	4/248	NT	11.0%	coding (130/2610 nt)	PP_2787	transporter
	?	NC_002947	3174928 =	33 (0.680)					coding (229/2610 nt)	PP_2787	transporter
*	?	NC_002947	= 3209806	33 (0.630)	3 (0.060)	3/244	NT	8.5%	intergenic (+67/+50)	PP_2813/PP_2814	BNR domain‑containing protein/hypothetical protein
	?	NC_002947	= 3209831	34 (0.710)					intergenic (+92/+25)	PP_2813/PP_2814	BNR domain‑containing protein/hypothetical protein
*	?	NC_002947	3255679 =	46 (0.880)	7 (0.140)	5/254	NT	13.6%	coding (59/2202 nt)	PP_2852	sulfatase domain‑containing protein
	?	NC_002947	3255714 =	45 (0.910)					coding (24/2202 nt)	PP_2852	sulfatase domain‑containing protein
*	?	NC_002947	3271705 =	36 (0.690)	4 (0.080)	4/252	NT	10.2%	coding (380/1953 nt)	PP_2869	FMN‑binding oxidoreductase
	?	NC_002947	3271743 =	36 (0.730)					coding (342/1953 nt)	PP_2869	FMN‑binding oxidoreductase
*	?	NC_002947	= 3310078	31 (0.600)	4 (0.080)	4/244	NT	11.7%	coding (1193/1251 nt)	lhgO	L‑2‑hydroxyglutarate oxidase
	?	NC_002947	= 3310098	32 (0.670)					coding (1213/1251 nt)	lhgO	L‑2‑hydroxyglutarate oxidase
*	?	NC_002947	3364666 =	58 (1.110)	4 (0.080)	4/256	NT	6.7%	coding (560/879 nt)	PP_2961	LysR family transcriptional regulator
	?	NC_002947	3364702 =	55 (1.100)					coding (524/879 nt)	PP_2961	LysR family transcriptional regulator
*	?	NC_002947	3450359 =	43 (0.830)	3 (0.060)	3/254	NT	7.1%	coding (228/366 nt)	PP_5558	Xre family transcriptional regulator
	?	NC_002947	3450404 =	38 (0.760)					coding (183/366 nt)	PP_5558	Xre family transcriptional regulator
*	?	NC_002947	= 3479286	55 (1.060)	4 (0.080)	4/252	NT	7.1%	coding (1933/2496 nt)	PP_3090	OmpA domain‑containing protein
	?	NC_002947	= 3479308	52 (1.050)					coding (1911/2496 nt)	PP_3090	OmpA domain‑containing protein
*	?	NC_002947	= 3485232	33 (0.630)	3 (0.060)	3/256	NT	7.8%	coding (692/3804 nt)	PP_3091	membrane protein
	?	NC_002947	= 3485268	39 (0.780)					coding (656/3804 nt)	PP_3091	membrane protein
*	?	NC_002947	= 3528142	40 (0.770)	5 (0.100)	4/252	NT	11.6%	coding (1353/1419 nt)	imuB	DNA repair DNA linked protein
	?	NC_002947	= 3528169	38 (0.770)					coding (1380/1419 nt)	imuB	DNA repair DNA linked protein
*	?	NC_002947	3532006 =	44 (0.850)	6 (0.120)	5/254	NT	12.5%	coding (224/762 nt)	yeaE	methylglyoxal reductase
	?	NC_002947	3532038 =	42 (0.850)					coding (192/762 nt)	yeaE	methylglyoxal reductase
*	?	NC_002947	= 3590049	71 (1.360)	4 (0.080)	4/250	NT	5.7%	coding (570/1251 nt)	nicP‑I	porin‑like protein
	?	NC_002947	= 3590087	65 (1.330)					coding (608/1251 nt)	nicP‑I	porin‑like protein
*	?	NC_002947	= 3599288	48 (0.920)	4 (0.080)	4/256	NT	8.1%	coding (417/1521 nt)	PP_3175	ferredoxin reductase dioxygenase subunit
	?	NC_002947	= 3599319	44 (0.880)					coding (386/1521 nt)	PP_3175	ferredoxin reductase dioxygenase subunit
*	?	NC_002947	3607935 =	69 (1.330)	5 (0.100)	5/262	NT	7.4%	coding (1182/2265 nt)	PP_3182	GGDEF domain‑containing protein
	?	NC_002947	3607974 =	58 (1.130)					coding (1143/2265 nt)	PP_3182	GGDEF domain‑containing protein
*	?	NC_002947	= 3608344	34 (0.650)	3 (0.060)	3/252	NT	8.0%	coding (773/2265 nt)	PP_3182	GGDEF domain‑containing protein
	?	NC_002947	= 3608370	37 (0.750)					coding (747/2265 nt)	PP_3182	GGDEF domain‑containing protein
*	?	NC_002947	= 3620164	48 (0.920)	3 (0.060)	3/254	NT	6.3%	coding (189/948 nt)	PP_3190	ornithine cyclodeaminase/mu‑crystallin family protein
	?	NC_002947	= 3620190	43 (0.870)					coding (163/948 nt)	PP_3190	ornithine cyclodeaminase/mu‑crystallin family protein
*	?	NC_002947	3628983 =	46 (0.880)	3 (0.060)	3/246	NT	7.9%	coding (773/1125 nt)	PP_3199	monooxygenase
	?	NC_002947	3629038 =	27 (0.560)					coding (828/1125 nt)	PP_3199	monooxygenase
*	?	NC_002947	= 3637858	48 (0.920)	4 (0.080)	4/252	NT	8.3%	coding (438/588 nt)	PP_3204	hypothetical protein
	?	NC_002947	= 3637894	43 (0.870)					coding (474/588 nt)	PP_3204	hypothetical protein
*	?	NC_002947	= 3641820	48 (0.920)	3 (0.060)	3/254	NT	6.1%	coding (1385/1431 nt)	PP_3209	isoxanthopterin deaminase
	?	NC_002947	= 3641851	47 (0.950)					coding (1354/1431 nt)	PP_3209	isoxanthopterin deaminase
*	?	NC_002947	= 3685928	43 (0.830)	3 (0.060)	3/258	NT	6.3%	coding (336/1332 nt)	PP_3251	hypothetical protein
	?	NC_002947	= 3685965	48 (0.950)					coding (373/1332 nt)	PP_3251	hypothetical protein
*	?	NC_002947	= 3711580	37 (0.710)	3 (0.060)	3/246	NT	8.0%	coding (111/759 nt)	paaC	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
	?	NC_002947	= 3711623	35 (0.730)					coding (68/759 nt)	paaC	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
*	?	NC_002947	3782190 =	56 (1.080)	4 (0.080)	4/256	NT	6.8%	coding (127/846 nt)	nikC	nickel ABC transporter permease
	?	NC_002947	3782265 =	56 (1.120)					coding (202/846 nt)	nikC	nickel ABC transporter permease
*	?	NC_002947	3822271 =	39 (0.750)	4 (0.080)	3/252	NT	8.9%	coding (913/1293 nt)	kguT	2‑ketogluconate transporter, putative
	?	NC_002947	3822350 =	45 (0.910)					coding (834/1293 nt)	kguT	2‑ketogluconate transporter, putative
*	?	NC_002947	= 3825683	27 (0.520)	4 (0.080)	4/256	NT	12.5%	coding (363/1020 nt)	ptxS	2‑ketogluconate utilization repressor
	?	NC_002947	= 3825702	30 (0.600)					coding (344/1020 nt)	ptxS	2‑ketogluconate utilization repressor
*	?	NC_002947	3826561 =	NA (NA)	5 (0.100)	5/258	NT	NA	intergenic (‑516/+87)	ptxS/PP_3381	2‑ketogluconate utilization repressor/transposase
	?	NC_002947	3826627 =	NA (NA)					intergenic (‑582/+21)	ptxS/PP_3381	2‑ketogluconate utilization repressor/transposase
*	?	NC_002947	= 3949811	56 (1.080)	3 (0.060)	3/252	NT	5.3%	coding (1226/1491 nt)	PP_3486	cytochrome c
	?	NC_002947	= 3949852	55 (1.120)					coding (1185/1491 nt)	PP_3486	cytochrome c
*	?	NC_002947	3967182 =	46 (0.880)	3 (0.060)	3/258	NT	6.7%	coding (1375/2001 nt)	ydcP	peptidase
	?	NC_002947	3967224 =	39 (0.770)					coding (1417/2001 nt)	ydcP	peptidase
*	?	NC_002947	= 3970756	NA (NA)	5 (0.100)	5/252	NT	NA	coding (675/1536 nt)	PP_3501	transposase
	?	NC_002947	= 3970783	NA (NA)					coding (702/1536 nt)	PP_3501	transposase
*	?	NC_002947	3980640 =	62 (1.190)	3 (0.060)	3/252	NT	5.1%	coding (1062/1068 nt)	cobW	adenosylcobalamin biosynthesis protein CobW
	?	NC_002947	3980676 =	52 (1.050)					coding (1026/1068 nt)	cobW	adenosylcobalamin biosynthesis protein CobW
*	?	NC_002947	4031302 =	54 (1.040)	4 (0.080)	4/254	NT	7.3%	coding (965/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
	?	NC_002947	4031336 =	50 (1.010)					coding (999/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
*	?	NC_002947	= 4036819	42 (0.810)	4 (0.080)	4/252	NT	9.4%	coding (1870/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 4036880	37 (0.750)					coding (1931/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 4045394	59 (1.130)	3 (0.060)	3/252	NT	5.2%	coding (314/1200 nt)	PP_3566	MFS transporter
	?	NC_002947	= 4045441	53 (1.080)					coding (267/1200 nt)	PP_3566	MFS transporter
*	?	NC_002947	= 4056776	50 (0.960)	3 (0.060)	3/254	NT	5.2%	coding (886/2406 nt)	PP_3575	ferric siderophore receptor
	?	NC_002947	= 4056833	62 (1.250)					coding (829/2406 nt)	PP_3575	ferric siderophore receptor
*	?	NC_002947	4079414 =	51 (0.980)	4 (0.090)	4/218	NT	9.3%	intergenic (‑218/+166)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
	?	NC_002947	4079531 =	36 (0.850)					intergenic (‑335/+49)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
*	?	NC_002947	= 4094649	35 (0.670)	7 (0.150)	4/242	NT	17.8%	intergenic (+65/+70)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
	?	NC_002947	= 4094694	33 (0.700)					intergenic (+110/+25)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
*	?	NC_002947	= 4122003	37 (0.710)	3 (0.060)	3/258	NT	7.6%	coding (633/642 nt)	PP_3625	LysE family transporter
	?	NC_002947	= 4122088	37 (0.730)					coding (548/642 nt)	PP_3625	LysE family transporter
*	?	NC_002947	= 4131110	41 (0.790)	8 (0.170)	6/246	NT	17.6%	intergenic (+22/+90)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease
	?	NC_002947	= 4131172	37 (0.770)					intergenic (+84/+28)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease
*	?	NC_002947	4144914 =	53 (1.020)	4 (0.080)	4/250	NT	7.6%	coding (467/753 nt)	PP_3649	GntR family transcriptional regulator
	?	NC_002947	4144974 =	48 (0.980)					coding (527/753 nt)	PP_3649	GntR family transcriptional regulator
*	?	NC_002947	= 4236304	47 (0.900)	4 (0.080)	4/256	NT	7.9%	coding (469/936 nt)	catA‑I	catechol 1,2‑dioxygenase
	?	NC_002947	= 4236329	48 (0.960)					coding (444/936 nt)	catA‑I	catechol 1,2‑dioxygenase
*	?	NC_002947	= 4243965	39 (0.750)	4 (0.080)	4/254	NT	9.5%	coding (1056/1191 nt)	aruH	arginine‑‑pyruvate transaminase AruH
	?	NC_002947	= 4244002	39 (0.780)					coding (1019/1191 nt)	aruH	arginine‑‑pyruvate transaminase AruH
*	?	NC_002947	= 4253766	44 (0.850)	3 (0.060)	3/250	NT	6.4%	intergenic (‑88/+109)	rocE/PP_3728	amino acid permease RocE/two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4253801	47 (0.960)					intergenic (‑123/+74)	rocE/PP_3728	amino acid permease RocE/two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	4266523 =	29 (0.560)	8 (0.160)	6/252	NT	23.0%	intergenic (‑65/+81)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	4266610 =	26 (0.530)					coding (1248/1254 nt)	galP‑IV	porin‑like protein
*	?	NC_002947	= 4294597	42 (0.810)	6 (0.120)	6/258	NT	13.4%	coding (776/1302 nt)	opdN	outer‑membrane porin D
	?	NC_002947	= 4294635	37 (0.730)					coding (738/1302 nt)	opdN	outer‑membrane porin D
*	?	NC_002947	= 4337139	52 (1.000)	4 (0.080)	4/252	NT	7.5%	coding (76/885 nt)	PP_3811	LysR family transcriptional regulator
	?	NC_002947	= 4337178	50 (1.010)					coding (37/885 nt)	PP_3811	LysR family transcriptional regulator
*	?	NC_002947	4390817 =	33 (0.630)	5 (0.100)	5/254	NT	12.3%	coding (108/192 nt)	PP_5640	hypothetical protein
	?	NC_002947	4390856 =	40 (0.800)					coding (69/192 nt)	PP_5640	hypothetical protein
*	?	NC_002947	= 4433959	46 (0.880)	3 (0.060)	3/248	NT	6.2%	intergenic (+107/‑56)	PP_3928/PP_3929	hypothetical protein/hypothetical protein
	?	NC_002947	= 4433985	48 (0.990)					intergenic (+133/‑30)	PP_3928/PP_3929	hypothetical protein/hypothetical protein
*	?	NC_002947	= 4438181	31 (0.600)	4 (0.080)	4/248	NT	11.0%	coding (1341/1425 nt)	PP_3932	diguanylate cyclase
	?	NC_002947	= 4438272	36 (0.740)					coding (757/762 nt)	PP_3933	membrane protein
*	?	NC_002947	= 4443076	46 (0.880)	3 (0.060)	3/256	NT	6.6%	coding (906/1314 nt)	nicT	metabolite transport protein NicT
	?	NC_002947	= 4443107	41 (0.820)					coding (875/1314 nt)	nicT	metabolite transport protein NicT
*	?	NC_002947	4447126 =	33 (0.630)	3 (0.060)	3/256	NT	7.7%	coding (439/1149 nt)	nicC	6‑hydroxynicotinate 3‑monooxygenase
	?	NC_002947	4447167 =	40 (0.800)					coding (398/1149 nt)	nicC	6‑hydroxynicotinate 3‑monooxygenase
*	?	NC_002947	4479975 =	62 (1.190)	5 (0.100)	5/254	NT	8.5%	coding (110/234 nt)	PP_3971	hypothetical protein
	?	NC_002947	4480013 =	49 (0.990)					coding (148/234 nt)	PP_3971	hypothetical protein
*	?	NC_002947	4485707 =	64 (1.230)	5 (0.100)	4/252	NT	8.8%	coding (883/1302 nt)	PP_3977	hypothetical protein
	?	NC_002947	4485745 =	43 (0.870)					coding (921/1302 nt)	PP_3977	hypothetical protein
*	?	NC_002947	4529988 =	32 (0.610)	4 (0.080)	4/252	NT	10.8%	coding (423/429 nt)	PP_4018	acetyltransferase
	?	NC_002947	4530052 =	36 (0.730)					intergenic (+58/‑110)	PP_4018/topB	acetyltransferase/DNA topoisomerase III
*	?	NC_002947	4548689 =	46 (0.880)	4 (0.080)	4/256	NT	6.9%	coding (1001/1440 nt)	pydB	bifunctional D‑hydantoinase/dihydropyrimidinase
	?	NC_002947	4548773 =	64 (1.280)					coding (1085/1440 nt)	pydB	bifunctional D‑hydantoinase/dihydropyrimidinase
*	?	NC_002947	4568531 =	53 (1.020)	4 (0.080)	4/260	NT	7.8%	coding (461/2070 nt)	malQ	4‑alpha‑glucanotransferase
	?	NC_002947	4568595 =	43 (0.850)					coding (525/2070 nt)	malQ	4‑alpha‑glucanotransferase
*	?	NC_002947	4571484 =	47 (0.900)	3 (0.060)	3/250	NT	6.3%	coding (1348/2775 nt)	treY	maltooligosyl trehalose synthase
	?	NC_002947	4571559 =	45 (0.920)					coding (1423/2775 nt)	treY	maltooligosyl trehalose synthase
*	?	NC_002947	= 4601742	45 (0.860)	5 (0.100)	5/254	NT	10.8%	coding (150/633 nt)	PP_4073	hypothetical protein
	?	NC_002947	= 4601772	40 (0.800)					coding (120/633 nt)	PP_4073	hypothetical protein
*	?	NC_002947	4611028 =	37 (0.710)	3 (0.060)	3/254	NT	7.4%	coding (506/516 nt)	hcpC‑II	hemolysin‑coregulated protein
	?	NC_002947	4611100 =	40 (0.800)					intergenic (+62/‑2045)	hcpC‑II/PP_4084	hemolysin‑coregulated protein/hypothetical protein
*	?	NC_002947	4647557 =	19 (0.360)	4 (0.110)	4/188	NT	24.7%	intergenic (+10/+121)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	4647665 =	11 (0.300)					intergenic (+118/+13)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	4648490 =	52 (1.000)	3 (0.060)	3/252	NT	5.5%	coding (649/1461 nt)	PP_4112	sulfate transporter
	?	NC_002947	4648534 =	53 (1.080)					coding (605/1461 nt)	PP_4112	sulfate transporter
*	?	NC_002947	4674602 =	40 (0.770)	5 (0.100)	3/254	NT	10.2%	coding (1374/2073 nt)	PP_4137	outer membrane siderophore receptor
	?	NC_002947	4674651 =	50 (1.010)					coding (1423/2073 nt)	PP_4137	outer membrane siderophore receptor
*	?	NC_002947	4695719 =	48 (0.920)	4 (0.080)	4/252	NT	8.2%	coding (565/1224 nt)	PP_4155	amine oxidase
	?	NC_002947	4695775 =	44 (0.890)					coding (509/1224 nt)	PP_4155	amine oxidase
*	?	NC_002947	4731861 =	55 (1.060)	3 (0.060)	3/258	NT	5.4%	coding (900/1224 nt)	sucB	2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
	?	NC_002947	4731897 =	52 (1.030)					coding (864/1224 nt)	sucB	2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
*	?	NC_002947	= 4763752	46 (0.880)	4 (0.080)	4/252	NT	9.4%	coding (150/1659 nt)	pvdE	pyoverdine ABC transporter ATP‑binding protein/permease
	?	NC_002947	= 4763793	34 (0.690)					coding (191/1659 nt)	pvdE	pyoverdine ABC transporter ATP‑binding protein/permease
*	?	NC_002947	4770978 =	60 (1.150)	3 (0.060)	3/252	NT	5.4%	coding (8289/10413 nt)	pvdD	non‑ribosomal peptide synthetase
	?	NC_002947	4771025 =	48 (0.970)					coding (8242/10413 nt)	pvdD	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4787630	47 (0.900)	3 (0.060)	3/252	NT	5.7%	coding (6210/6525 nt)	pvdI	non‑ribosomal peptide synthetase
	?	NC_002947	= 4787661	54 (1.100)					coding (6179/6525 nt)	pvdI	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4799323	59 (1.130)	4 (0.080)	4/260	NT	6.8%	coding (421/486 nt)	PP_4226	hypothetical protein
	?	NC_002947	= 4799397	52 (1.020)					intergenic (+9/‑3)	PP_4226/PP_5664	hypothetical protein/hypothetical protein
*	?	NC_002947	4808174 =	3 (0.060)	21 (0.550)	15/196	NT	51.1%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	38 (0.990)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4810285 =	65 (1.250)	5 (0.100)	5/254	NT	7.7%	coding (125/837 nt)	PP_4236	thiol:disulfide interchange protein DsbE
	?	NC_002947	4810333 =	57 (1.150)					coding (173/837 nt)	PP_4236	thiol:disulfide interchange protein DsbE
*	?	NC_002947	= 4896376	30 (0.580)	11 (0.220)	9/256	NT	22.3%	intergenic (+9/‑199)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4896467	48 (0.960)					intergenic (+100/‑108)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 4907490	82 (1.580)	5 (0.100)	5/248	NT	6.2%	coding (299/939 nt)	PP_4316	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	= 4907516	75 (1.550)					coding (273/939 nt)	PP_4316	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	4913709 =	46 (0.880)	4 (0.080)	4/246	NT	8.3%	coding (990/1989 nt)	ccmF	holocytochrome c synthetase
	?	NC_002947	4913769 =	46 (0.960)					coding (930/1989 nt)	ccmF	holocytochrome c synthetase
*	?	NC_002947	= 4926807	41 (0.790)	3 (0.060)	3/256	NT	6.6%	coding (1075/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase
	?	NC_002947	= 4926840	45 (0.900)					coding (1042/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase
*	?	NC_002947	4963231 =	75 (1.440)	4 (0.080)	3/254	NT	6.1%	coding (424/1218 nt)	fleS	two‑component system sensor histidine kinase FleS
	?	NC_002947	4963267 =	52 (1.050)					coding (388/1218 nt)	fleS	two‑component system sensor histidine kinase FleS
*	?	NC_002947	4999641 =	36 (0.690)	3 (0.060)	3/254	NT	6.9%	coding (494/1383 nt)	PP_4407	gamma‑aminobutyrate transporter
	?	NC_002947	4999711 =	47 (0.950)					coding (564/1383 nt)	PP_4407	gamma‑aminobutyrate transporter
*	?	NC_002947	= 5040496	50 (0.960)	4 (0.080)	4/248	NT	8.8%	coding (8/1122 nt)	PP_4446	group II intron‑encoding maturase
	?	NC_002947	= 5040543	36 (0.740)					intergenic (‑40/‑81)	PP_4446/PP_5680	group II intron‑encoding maturase/Cro/CI family transcriptional regulator
*	?	NC_002947	5060047 =	62 (1.190)	5 (0.100)	5/256	NT	7.8%	coding (787/1581 nt)	PP_4458	opine ABC transporter substrate‑binding protein
	?	NC_002947	5060079 =	58 (1.160)					coding (755/1581 nt)	PP_4458	opine ABC transporter substrate‑binding protein
*	?	NC_002947	= 5091077	66 (1.270)	3 (0.060)	3/250	NT	5.1%	intergenic (‑141/+7)	astA‑II/astC	arginine N‑succinyltransferase subunit alpha/acetylornithine aminotransferase
	?	NC_002947	= 5091118	50 (1.020)					coding (1187/1221 nt)	astC	acetylornithine aminotransferase
*	?	NC_002947	5163651 =	54 (1.040)	3 (0.060)	3/254	NT	5.7%	coding (200/1173 nt)	PP_4545	beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	5163683 =	48 (0.970)					coding (168/1173 nt)	PP_4545	beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	= 5164208	76 (1.460)	4 (0.080)	4/258	NT	5.3%	coding (3672/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	= 5164246	69 (1.370)					coding (3634/3906 nt)	hrpA	ATP‑dependent helicase HrpA
*	?	NC_002947	= 5196117	57 (1.090)	3 (0.060)	3/250	NT	5.2%	coding (398/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	= 5196133	56 (1.150)					coding (382/690 nt)	ybgJ	allophanate hydrolase subunit 1
*	?	NC_002947	= 5196392	51 (0.980)	9 (0.190)	8/246	NT	15.5%	coding (123/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	= 5196417	51 (1.060)					coding (98/690 nt)	ybgJ	allophanate hydrolase subunit 1
*	?	NC_002947	5288394 =	23 (0.440)	3 (0.070)	3/206	NT	18.9%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5288488 =	8 (0.200)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	= 5291886	53 (1.020)	3 (0.060)	3/252	NT	6.2%	intergenic (+116/+76)	PP_4665/mmsB	hypothetical protein/3‑hydroxyisobutyrate dehydrogenase
	?	NC_002947	= 5291937	41 (0.830)					intergenic (+167/+25)	PP_4665/mmsB	hypothetical protein/3‑hydroxyisobutyrate dehydrogenase
*	?	NC_002947	= 5298943	52 (1.000)	3 (0.060)	3/252	NT	5.3%	coding (1159/2076 nt)	recD	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
	?	NC_002947	= 5298974	57 (1.160)					coding (1128/2076 nt)	recD	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
*	?	NC_002947	5301233 =	65 (1.250)	4 (0.080)	4/254	NT	5.9%	coding (2540/3675 nt)	recB	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
	?	NC_002947	5301281 =	65 (1.310)					coding (2492/3675 nt)	recB	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
*	?	NC_002947	= 5378985	48 (0.920)	4 (0.080)	3/246	NT	8.5%	coding (570/1674 nt)	recN	DNA repair/recombination protein
	?	NC_002947	= 5379036	42 (0.870)					coding (621/1674 nt)	recN	DNA repair/recombination protein
*	?	NC_002947	= 5380510	50 (0.960)	3 (0.060)	3/256	NT	5.5%	coding (92/405 nt)	fur	ferric iron uptake global transcriptional repressor Fur
	?	NC_002947	= 5380557	55 (1.100)					coding (45/405 nt)	fur	ferric iron uptake global transcriptional repressor Fur
*	?	NC_002947	= 5385515	71 (1.360)	4 (0.080)	4/258	NT	5.2%	coding (246/1146 nt)	lldD	L‑lactate dehydrogenase
	?	NC_002947	= 5385542	78 (1.550)					coding (273/1146 nt)	lldD	L‑lactate dehydrogenase
*	?	NC_002947	= 5388759	46 (0.880)	3 (0.060)	3/256	NT	6.4%	coding (2269/2811 nt)	dld2	D‑lactate dehydrogenase
	?	NC_002947	= 5388784	43 (0.860)					coding (2294/2811 nt)	dld2	D‑lactate dehydrogenase
*	?	NC_002947	5450646 =	70 (1.340)	4 (0.080)	3/256	NT	5.8%	coding (25/840 nt)	corC	Co(2+)/Mg(2+)efflux heat shock protein
	?	NC_002947	5450689 =	62 (1.240)					coding (68/840 nt)	corC	Co(2+)/Mg(2+)efflux heat shock protein
*	?	NC_002947	= 5456444	56 (1.080)	3 (0.060)	3/252	NT	5.0%	coding (176/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	= 5456493	60 (1.220)					coding (225/2607 nt)	leuS	leucine‑‑tRNA ligase
*	?	NC_002947	= 5458335	64 (1.230)	4 (0.080)	4/258	NT	6.2%	coding (2067/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	= 5458377	59 (1.170)					coding (2109/2607 nt)	leuS	leucine‑‑tRNA ligase
*	?	NC_002947	= 5476368	61 (1.170)	7 (0.140)	7/252	NT	10.5%	coding (598/1317 nt)	PP_4813	PAP2 family protein/DedA family protein
	?	NC_002947	= 5476392	62 (1.260)					coding (622/1317 nt)	PP_4813	PAP2 family protein/DedA family protein
*	?	NC_002947	= 5476790	61 (1.170)	4 (0.080)	3/258	NT	6.6%	coding (1020/1317 nt)	PP_4813	PAP2 family protein/DedA family protein
	?	NC_002947	= 5476814	54 (1.070)					coding (1044/1317 nt)	PP_4813	PAP2 family protein/DedA family protein
*	?	NC_002947	= 5477130	13 (0.250)	4 (0.110)	4/184	NT	24.3%	intergenic (+43/+69)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477147	16 (0.450)					intergenic (+60/+52)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
*	?	NC_002947	= 5487779	39 (0.750)	3 (0.060)	3/252	NT	5.9%	coding (1108/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 5487836	59 (1.200)					coding (1165/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	5545321 =	NA (NA)	56 (1.090)	46/262	NT	100%	intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	= 5621245	0 (0.000)					coding (19/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	= 5545666	NA (NA)	46 (0.900)	42/260	NT	100%	intergenic (‑806/+71)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	5621244 =	0 (0.000)					coding (20/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	= 5546722	52 (1.000)	5 (0.100)	5/252	NT	9.2%	coding (2332/2574 nt)	rnr	exoribonuclease R
	?	NC_002947	= 5546773	49 (0.990)					coding (2281/2574 nt)	rnr	exoribonuclease R
*	?	NC_002947	5552330 =	47 (0.900)	5 (0.100)	4/252	NT	9.9%	coding (1559/1566 nt)	PP_4882	iron ABC transporter permease
	?	NC_002947	5552377 =	46 (0.930)					intergenic (+40/+621)	PP_4882/PP_5717	iron ABC transporter permease/hypothetical protein
*	?	NC_002947	= 5562111	53 (1.020)	3 (0.060)	3/258	NT	5.4%	coding (774/1218 nt)	hflK	integral membrane ATP‑dependent zinc metallopeptidase
	?	NC_002947	= 5562148	53 (1.050)					coding (737/1218 nt)	hflK	integral membrane ATP‑dependent zinc metallopeptidase
*	?	NC_002947	= 5583793	57 (1.090)	5 (0.100)	4/252	NT	8.6%	coding (1939/2259 nt)	parC	DNA topoisomerase IV subunit A
	?	NC_002947	= 5583844	52 (1.050)					coding (1888/2259 nt)	parC	DNA topoisomerase IV subunit A
*	?	NC_002947	= 5601631	36 (0.690)	4 (0.080)	4/246	NT	10.2%	coding (1851/5418 nt)	PP_4924	subtilase family serine protease
	?	NC_002947	= 5601675	37 (0.770)					coding (1807/5418 nt)	PP_4924	subtilase family serine protease
*	?	NC_002947	5606005 =	44 (0.850)	4 (0.080)	4/258	NT	7.4%	coding (2134/2196 nt)	cyaB	cyclolysin secretion/processing ATP‑binding protein CyaB
	?	NC_002947	5606040 =	58 (1.150)					coding (2099/2196 nt)	cyaB	cyclolysin secretion/processing ATP‑binding protein CyaB
*	?	NC_002947	= 5612416	56 (1.080)	3 (0.060)	3/258	NT	5.0%	coding (238/813 nt)	PP_4932	D‑arabinose 1‑dehydrogenase
	?	NC_002947	= 5612427	59 (1.170)					coding (249/813 nt)	PP_4932	D‑arabinose 1‑dehydrogenase
*	?	NC_002947	5617548 =	65 (1.250)	4 (0.080)	4/254	NT	6.2%	coding (1104/1176 nt)	wzy	O‑antigen polymerase
	?	NC_002947	5617594 =	59 (1.190)					coding (1058/1176 nt)	wzy	O‑antigen polymerase
*	?	NC_002947	= 5620750	55 (1.060)	3 (0.060)	3/250	NT	5.1%	coding (514/774 nt)	PP_4939	hypothetical protein
	?	NC_002947	= 5620766	61 (1.250)					coding (498/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	5634082 =	76 (1.460)	5 (0.100)	5/256	NT	6.5%	coding (3612/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
	?	NC_002947	5634113 =	70 (1.400)					coding (3643/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
*	?	NC_002947	5671615 =	43 (0.830)	3 (0.070)	3/218	NT	9.2%	intergenic (+34/‑136)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	5671700 =	24 (0.560)					intergenic (+119/‑51)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
*	?	NC_002947	5718150 =	68 (1.310)	5 (0.100)	4/248	NT	7.8%	coding (849/1917 nt)	PP_5020	methyl‑accepting chemotaxis protein
	?	NC_002947	5718206 =	55 (1.130)					coding (905/1917 nt)	PP_5020	methyl‑accepting chemotaxis protein
*	?	NC_002947	= 5724012	64 (1.230)	4 (0.080)	4/250	NT	6.1%	coding (87/801 nt)	PP_5024	amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 5724035	64 (1.310)					coding (64/801 nt)	PP_5024	amino acid ABC transporter substrate‑binding protein
*	?	NC_002947	= 5755484	27 (0.520)	3 (0.060)	3/250	NT	10.1%	coding (598/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	= 5755518	28 (0.570)					coding (632/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
*	?	NC_002947	5755682 =	43 (0.830)	3 (0.060)	3/254	NT	8.1%	coding (796/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	5755727 =	27 (0.540)					coding (841/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
*	?	NC_002947	= 5780951	68 (1.310)	4 (0.080)	4/252	NT	5.5%	coding (1255/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
	?	NC_002947	= 5780984	72 (1.460)					coding (1288/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
*	?	NC_002947	= 5786495	47 (0.900)	3 (0.070)	3/218	NT	6.4%	intergenic (+38/‑93)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	= 5786532	49 (1.150)					intergenic (+75/‑56)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	= 5787981	53 (1.020)	3 (0.060)	3/254	NT	5.5%	coding (788/900 nt)	ynfL	DNA‑binding transcriptional regulator
	?	NC_002947	= 5788004	53 (1.070)					coding (765/900 nt)	ynfL	DNA‑binding transcriptional regulator
*	?	NC_002947	5816854 =	38 (0.730)	6 (0.130)	6/230	NT	19.1%	intergenic (+40/+89)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	5816917 =	18 (0.400)					intergenic (+103/+26)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	5823215 =	49 (0.940)	3 (0.060)	3/258	NT	5.1%	coding (151/1176 nt)	yggW	coproporphyrinogen/heterocyclic compound oxidase
	?	NC_002947	5823263 =	64 (1.270)					coding (199/1176 nt)	yggW	coproporphyrinogen/heterocyclic compound oxidase
*	?	NC_002947	= 5838306	52 (1.000)	4 (0.080)	3/252	NT	7.6%	coding (1107/1371 nt)	PP_5116	hypothetical protein
	?	NC_002947	= 5838327	48 (0.970)					coding (1128/1371 nt)	PP_5116	hypothetical protein
*	?	NC_002947	5851995 =	46 (0.880)	3 (0.060)	3/250	NT	6.7%	coding (299/1089 nt)	PP_5129	hypothetical protein
	?	NC_002947	5852035 =	40 (0.820)					coding (259/1089 nt)	PP_5129	hypothetical protein
*	?	NC_002947	= 5858833	37 (0.710)	4 (0.080)	4/252	NT	10.5%	intergenic (+11/+127)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	= 5858940	33 (0.670)					intergenic (+118/+20)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
*	?	NC_002947	5866389 =	42 (0.810)	4 (0.080)	4/244	NT	8.0%	coding (156/444 nt)	PP_5140	MerR family transcriptional regulator
	?	NC_002947	5866470 =	54 (1.130)					coding (237/444 nt)	PP_5140	MerR family transcriptional regulator
*	?	NC_002947	= 5874873	55 (1.060)	7 (0.140)	4/258	NT	12.7%	coding (1298/1515 nt)	ilvA‑II	threonine deaminase
	?	NC_002947	= 5874924	43 (0.850)					coding (1247/1515 nt)	ilvA‑II	threonine deaminase
*	?	NC_002947	= 5910077	41 (0.790)	4 (0.080)	4/252	NT	9.5%	coding (674/1362 nt)	spuC‑II	polyamine:pyruvate transaminase
	?	NC_002947	= 5910097	37 (0.750)					coding (654/1362 nt)	spuC‑II	polyamine:pyruvate transaminase
*	?	NC_002947	= 5942862	47 (0.900)	4 (0.080)	4/252	NT	7.7%	coding (248/978 nt)	PP_5210	alcohol dehydrogenase
	?	NC_002947	= 5942894	51 (1.030)					coding (280/978 nt)	PP_5210	alcohol dehydrogenase
*	?	NC_002947	5947087 =	43 (0.830)	3 (0.060)	3/244	NT	6.0%	intergenic (‑79/+127)	ubiD/rho	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho
	?	NC_002947	5947192 =	54 (1.130)					intergenic (‑184/+22)	ubiD/rho	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho
*	?	NC_002947	6017044 =	57 (1.090)	4 (0.080)	4/250	NT	7.2%	coding (290/423 nt)	PP_5267	cytochrome c5
	?	NC_002947	6017093 =	49 (1.000)					coding (241/423 nt)	PP_5267	cytochrome c5
*	?	NC_002947	= 6019270	43 (0.830)	3 (0.070)	3/220	NT	6.9%	intergenic (‑71/+74)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	= 6019300	46 (1.070)					intergenic (‑101/+44)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
*	?	NC_002947	= 6041621	62 (1.190)	4 (0.080)	4/250	NT	5.8%	coding (303/723 nt)	rph	ribonuclease PH
	?	NC_002947	= 6041691	71 (1.450)					coding (233/723 nt)	rph	ribonuclease PH
*	?	NC_002947	6056656 =	79 (1.520)	4 (0.080)	4/256	NT	5.0%	coding (783/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator
	?	NC_002947	6056708 =	75 (1.500)					coding (835/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator
*	?	NC_002947	= 6059891	39 (0.750)	6 (0.120)	6/254	NT	14.2%	coding (931/1404 nt)	PP_5311	signal transduction protein
	?	NC_002947	= 6059929	35 (0.700)					coding (969/1404 nt)	PP_5311	signal transduction protein
*	?	NC_002947	= 6060444	57 (1.090)	6 (0.130)	5/238	NT	10.3%	intergenic (+80/+101)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	= 6060503	53 (1.140)					intergenic (+139/+42)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	6076320 =	55 (1.060)	7 (0.140)	7/250	NT	12.7%	coding (242/2289 nt)	PP_5328	phosphate ABC transporter permease
	?	NC_002947	6076357 =	45 (0.920)					coding (205/2289 nt)	PP_5328	phosphate ABC transporter permease
*	?	NC_002947	6098661 =	56 (1.080)	3 (0.060)	3/256	NT	5.9%	coding (428/867 nt)	PP_5350	RpiR family transcriptional regulator
	?	NC_002947	6098736 =	42 (0.840)					coding (353/867 nt)	PP_5350	RpiR family transcriptional regulator
*	?	NC_002947	6122373 =	51 (0.980)	7 (0.140)	4/258	NT	12.7%	coding (1235/1446 nt)	PP_5372	aldehyde dehydrogenase
	?	NC_002947	6122402 =	47 (0.930)					coding (1206/1446 nt)	PP_5372	aldehyde dehydrogenase
*	?	NC_002947	= 6175589	70 (1.340)	5 (0.100)	5/258	NT	6.8%	coding (1008/1377 nt)	atpD	ATP synthase subunit beta
	?	NC_002947	= 6175633	69 (1.370)					coding (964/1377 nt)	atpD	ATP synthase subunit beta