mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 61.1% | ‑3.6 / 14.2 | 19 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,941,210 | 0 | C | T | 60.0% | 1.1 / 16.7 | 15 | E40K (GAA→AAA) | hdfR | HTH‑type transcriptional regulator HdfR |
| * | NZ_CP009273 | 262,051 | 0 | T | G | 58.3% | 4.5 / 10.8 | 12 | T72P (ACC→CCC) | BW25113_RS25425 | hypothetical protein |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 56.2% | ‑6.5 / 11.2 | 16 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 341,039 | 0 | C | A | 29.8% | 94.6 / 17.3 | 47 | intergenic (+337/‑76) | BW25113_RS01680/BW25113_RS01685 | hypothetical protein/hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 322269 | 38 (2.480) | 3 (0.210) | 3/238 | 1.3 | 8.9% | coding (690/1671 nt) | betA | choline dehydrogenase |
| ? | NZ_CP009273 | = 322352 | 26 (1.840) | coding (607/1671 nt) | betA | choline dehydrogenase | |||||