breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	2,319,929	0	T	G	62.5%	‑5.0 / 13.3	16	G114G (GGT→GGG)	atoB	acetyl‑CoA acetyltransferase
*	NZ_CP009273	4,058,958	0	G	A	57.9%	2.4 / 18.5	19	L57L (CTG→TTG) ‡	yihO	MFS transporter
*	NZ_CP009273	4,276,591	0	A	C	57.1%	11.8 / 13.7	14	W237G (TGG→GGG)	acs	acetate‑‑CoA ligase
*	NZ_CP009273	322,525	0	A	C	55.0%	16.0 / 19.7	20	V145G (GTG→GGG)	betA	choline dehydrogenase
*	NZ_CP009273	2,360,810	0	A	G	54.5%	4.7 / 12.4	11	G87G (GGA→GGG)	arnC	undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase
*	NZ_CP009273	3,387,030	0	A	G	54.5%	5.9 / 10.3	11	L863P (CTC→CCC)	yhdP	AsmA2 domain‑containing protein YhdP
*	NZ_CP009273	353,601	0	C	A	53.8%	1.5 / 13.2	13	L267F (TTG→TTT)	cynR	transcriptional regulator CynR
*	NZ_CP009273	739,561	0	T	G	53.8%	8.6 / 13.4	13	G171G (GGT→GGG)	pxpB	5‑oxoprolinase subunit PxpB
*	NZ_CP009273	3,612,628	0	T	G	53.8%	5.8 / 11.7	13	V26G (GTA→GGA)	rhsB	rhs element protein RhsB
*	NZ_CP009273	244,978	0	A	C	53.3%	9.3 / 11.4	15	pseudogene (1580/1713 nt)	BW25113_RS01160	flagellar biosynthesis protein FlhA
*	NZ_CP009273	832,042	0	C	G	53.3%	2.1 / 13.0	15	A79G (GCG→GGG)	hcxB	hydroxycarboxylate dehydrogenase HcXB
*	NZ_CP009273	2,319,934	0	A	G	53.3%	6.4 / 14.9	15	E116G (GAA→GGA)	atoB	acetyl‑CoA acetyltransferase
*	NZ_CP009273	4,058,956	0	C	A	52.6%	19.6 / 31.8	19	L57L (CTG→CTT) ‡	yihO	MFS transporter
*	NZ_CP009273	4,058,940	0	T	A	50.0%	11.7 / 15.0	22	T63S (ACC→TCC)	yihO	MFS transporter