mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,781,385 | 0 | T | G | 61.1% | ‑1.6 / 15.1 | 18 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NZ_CP009273 | 3,734,269 | 0 | T | G | 57.9% | 9.9 / 19.9 | 19 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate transaminase |
| * | NZ_CP009273 | 3,849,341 | 0 | T | C | 57.1% | 11.8 / 20.7 | 21 | G109G (GGA→GGG) | yidH | YidH family protein |
| * | NZ_CP009273 | 3,619,933 | 0 | T | G | 54.5% | 9.9 / 11.3 | 11 | P77P (CCA→CCC) | yhhJ | ABC transporter permease |
| * | NZ_CP009273 | 3,619,942 | 0 | C | A | 54.5% | 7.8 / 17.0 | 11 | W74C (TGG→TGT) | yhhJ | ABC transporter permease |
| * | NZ_CP009273 | 4,086,499 | 0 | C | A | 54.5% | ‑0.9 / 11.6 | 11 | V100V (GTG→GTT) | rhaM | L‑rhamnose mutarotase |
| * | NZ_CP009273 | 4,440,607 | 0 | T | C | 54.5% | 4.5 / 10.3 | 11 | F277L (TTC→CTC) | ytfQ | galactofuranose ABC transporter substrate‑binding protein YtfQ |
| * | NZ_CP009273 | 3,012,922 | 0 | T | G | 53.8% | 11.1 / 14.8 | 13 | S135A (TCG→GCG) | ssnA | putative aminohydrolase SsnA |
| * | NZ_CP009273 | 3,514,110 | 0 | G | T | 53.8% | 7.5 / 15.9 | 13 | T90K (ACA→AAA) | hofP | DNA utilization protein HofP |
| * | NZ_CP009273 | 883,470 | 0 | T | G | 53.3% | 15.6 / 18.0 | 15 | intergenic (+55/+120) | rcdA/ybjL | DNA‑binding transcriptional regulator RcdA/aspartate:alanine antiporter |