breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,910 T→G W30G (TGG→GGG)  folA → type 3 dihydrofolate reductase
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA
RA 3,511,988 C→A E146* (GAG→TAG)  aroK ← shikimate kinase AroK

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 134282 134324 43 2 [0] [1] 3 cueO multicopper oxidase CueO
* * ÷ NZ_CP009273 211803 211808 6 2 [1] [1] 2 nlpE envelope stress response activation lipoprotein NlpE
* * ÷ NZ_CP009273 239320 239379 60 3 [1] [1] 2 fadE acyl‑CoA dehydrogenase FadE
* * ÷ NZ_CP009273 244615 244625 11 4 [0] [0] 2 [rayT] [rayT]
* * ÷ NZ_CP009273 356968 357570 603 2 [1] [1] 2 lacA galactoside O‑acetyltransferase
* * ÷ NZ_CP009273 371211 371259 49 3 [1] [1] 2 mhpT 3‑(3‑hydroxy‑phenyl)propionate transporter
* * ÷ NZ_CP009273 396655 396678 24 2 [1] [1] 3 [BW25113_RS25915] [BW25113_RS25915]
* * ÷ NZ_CP009273 407799 407809 11 2 [0] [1] 2 araJ MFS transporter AraJ
* * ÷ NZ_CP009273 428486 428555 70 2 [0] [1] 2 nrdR transcriptional regulator NrdR
* * ÷ NZ_CP009273 432239 432259 21 3 [1] [0] 2 pgpA phosphatidylglycerophosphatase A
* * ÷ NZ_CP009273 472784 472797 14 2 [1] [1] 3 pdeB cyclic‑guanylate‑specific phosphodiesterase PdeB
* * ÷ NZ_CP009273 476449 476568 120 5 [1] [1] 2 tomB/acrB Hha toxicity modulator TomB/efflux RND transporter permease AcrB
* * ÷ NZ_CP009273 531586 531607 22 2 [1] [1] 2 hyi hydroxypyruvate isomerase
* * ÷ NZ_CP009273 540090 540100 11 4 [1] [1] 2 allC allantoate deiminase
* * ÷ NZ_CP009273 542233 542350 118 3 [1] [1] 2 fdrA acyl‑CoA synthetase FdrA
* * ÷ NZ_CP009273 565455 565497 43 2 [1] [1] 2 ybcK recombinase family protein
* * ÷ NZ_CP009273 578772 578781 10 2 [0] [1] 2 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 578963 579066 104 2 [1] [1] 2 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 579904 579962 59 2 [1] [0] 2 appY/ompT DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT
* * ÷ NZ_CP009273 581160 581201 42 2 [1] [1] 2 ompT/envY omptin family outer membrane protease OmpT/DNA‑binding transcriptional regulator EnvY
* * ÷ NZ_CP009273 602572 602581 10 3 [0] [1] 3 ybdK YbdK family carboxylate‑amine ligase
* * ÷ NZ_CP009273 619562 619570 9 2 [1] [1] 3 fepB Fe2+‑enterobactin ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 645873 645877 5 2 [1] [0] 2 citE citrate (pro‑3S)‑lyase subunit beta
* * ÷ NZ_CP009273 656043 656061 19 2 [1] [1] 2 ybeF YbeF family transcriptional regulator
* * ÷ NZ_CP009273 664468 664519 52 2 [0] [1] 2 [rsfS] [rsfS]
* * ÷ NZ_CP009273 687769 687779 11 3 [0] [1] 2 ybeY rRNA maturation RNase YbeY
* * ÷ NZ_CP009273 699858 699858 1 2 [0] [0] 2 nagE PTS N‑acetyl glucosamine transporter subunit IIABC
* * ÷ NZ_CP009273 716340 716519 180 4 [1] [1] 2 [kdpE] [kdpE]
* * ÷ NZ_CP009273 717083 717133 51 5 [1] [1] 2 kdpE two‑component system response regulator KdpE
* * ÷ NZ_CP009273 720202 720231 30 2 [0] [1] 2 kdpC K(+)‑transporting ATPase subunit C
* * ÷ NZ_CP009273 724367 724459 93 2 [1] [1] 2 kdpF/ybfA K(+)‑transporting ATPase subunit F/YbfA family protein
* * ÷ NZ_CP009273 724884 724905 22 6 [1] [1] 2 ybfA/rhsC YbfA family protein/rhs element protein RhsC
* * ÷ NZ_CP009273 733573 733583 11 2 [0] [1] 2 ybfD ISAs1 family transposase
* * ÷ NZ_CP009273 747675 747724 50 4 [1] [1] 2 [ybgD] [ybgD]
* * ÷ NZ_CP009273 759732 759757 26 2 [0] [1] 2 sucD succinate‑‑CoA ligase subunit alpha
* * ÷ NZ_CP009273 778239 778246 8 2 [0] [1] 2 nadA quinolinate synthase NadA
* * ÷ NZ_CP009273 779831 779857 27 2 [1] [1] 2 zitB CDF family zinc transporter ZitB
* * ÷ NZ_CP009273 791033 791063 31 2 [1] [1] 2 modA molybdate ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 793702 793706 5 3 [0] [0] 3 ybhA bifunctional pyridoxal phosphate/fructose‑1,6‑bisphosphate phosphatase
* * ÷ NZ_CP009273 802416 802478 63 3 [1] [1] 2 ybhC putative acyl‑CoA thioester hydrolase
* * ÷ NZ_CP009273 808926 808974 49 2 [0] [1] 2 bioD/uvrB dethiobiotin synthase/excinuclease ABC subunit UvrB
* * ÷ NZ_CP009273 815986 816028 43 2 [1] [1] 2 ybhL Bax inhibitor‑1/YccA family protein
* * ÷ NZ_CP009273 822292 822338 47 2 [1] [1] 2 ybhS ABC transporter permease
* * ÷ NZ_CP009273 829045 829056 12 2 [0] [0] 2 dinG ATP‑dependent DNA helicase DinG
* * ÷ NZ_CP009273 829116 829128 13 2 [0] [1] 2 dinG ATP‑dependent DNA helicase DinG
* * ÷ NZ_CP009273 837270 837325 56 2 [1] [1] 3 mcbA DUF1471 family periplasmic protein McbA
* * ÷ NZ_CP009273 851375 851447 73 2 [1] [1] 3 [ybiT] [ybiT]
* * ÷ NZ_CP009273 855040 855058 19 2 [0] [1] 3 ybiV sugar‑phosphatase YbiV
* * ÷ NZ_CP009273 872255 872346 92 2 [1] [1] 2 rimO 30S ribosomal protein S12 methylthiotransferase RimO
* * ÷ NZ_CP009273 886877 886907 31 2 [1] [1] 5 nfsA nitroreductase NfsA
* * ÷ NZ_CP009273 891995 892038 44 2 [1] [1] 2 potH putrescine ABC transporter permease PotH
* * ÷ NZ_CP009273 899425 899427 3 2 [1] [1] 2 ybjP lipoprotein
* * ÷ NZ_CP009273 903038 903094 57 2 [1] [0] 2 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 905114 905135 22 2 [1] [1] 3 poxB ubiquinone‑dependent pyruvate dehydrogenase
* * ÷ NZ_CP009273 909196 909224 29 3 [1] [1] 2 hcp hydroxylamine reductase
* * ÷ NZ_CP009273 926884 926899 16 2 [1] [1] 2 trxB thioredoxin‑disulfide reductase
* * ÷ NZ_CP009273 936826 936869 44 2 [1] [1] 2 dmsA dimethylsulfoxide reductase subunit A
* * ÷ NZ_CP009273 942585 942593 9 2 [0] [1] 2 ycaD/ycaM MFS transporter/amino acid permease
* * ÷ NZ_CP009273 950016 950231 216 2 [1] [1] 2 focA/ycaO formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
* * ÷ NZ_CP009273 969465 969508 44 2 [1] [1] 2 cmoM tRNA uridine 5‑oxyacetic acid(34) methyltransferase CmoM
* * ÷ NZ_CP009273 974575 974594 20 2 [1] [1] 2 mukB chromosome partition protein MukB
* * ÷ NZ_CP009273 982913 982932 20 2 [0] [0] 2 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 988783 988850 68 2 [1] [1] 2 ssuB aliphatic sulfonates ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 993173 993278 106 2 [1] [1] 3 ssuE/elfA NADPH‑dependent FMN reductase/fimbrial protein
* * ÷ NZ_CP009273 1002091 1002131 41 4 [1] [1] 2 ycbX 6‑N‑hydroxylaminopurine resistance protein YcbX
* * ÷ NZ_CP009273 1005728 1005750 23 2 [1] [0] 2 uup ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 1029031 1029071 41 2 [1] [1] 2 hyaB Ni/Fe‑hydrogenase large subunit
* * ÷ NZ_CP009273 1036445 1036512 68 2 [1] [1] 3 appA bifunctional acid phosphatase/4‑phytase
* * ÷ NZ_CP009273 1040103 1040142 40 2 [1] [1] 2 [etp]–[gfcE] [etp],[gfcE]
* * ÷ NZ_CP009273 1059630 1059641 12 2 [1] [1] 3 yccE YccE family protein
* * ÷ NZ_CP009273 1075472 1075559 88 2 [0] [1] 2 putP sodium/proline symporter PutP
* * ÷ NZ_CP009273 1088295 1088374 80 2 [1] [0] 3 [dgcT] [dgcT]
* * ÷ NZ_CP009273 1097770 1097778 9 2 [1] [0] 3 csgE curli production assembly/transport protein CsgE
* * ÷ NZ_CP009273 1098822 1098916 95 3 [1] [1] 3 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1107796 1107825 30 2 [1] [1] 2 mdoH glucans biosynthesis glucosyltransferase MdoH
* * ÷ NZ_CP009273 1108301 1108340 40 2 [1] [1] 2 mdoH glucans biosynthesis glucosyltransferase MdoH
* * ÷ NZ_CP009273 1114677 1114736 60 2 [0] [1] 2 yceJ/BW25113_RS05515 cytochrome b/YceO family protein
* * ÷ NZ_CP009273 1114874 1114893 20 2 [1] [1] 3 [BW25113_RS05515] [BW25113_RS05515]
* * ÷ NZ_CP009273 1116663 1116698 36 3 [0] [1] 2 [dinI] [dinI]
* * ÷ NZ_CP009273 1129723 1129741 19 2 [1] [1] 2 flgF flagellar basal‑body rod protein FlgF
* * ÷ NZ_CP009273 1137626 1137708 83 2 [1] [1] 2 rne ribonuclease E
* * ÷ NZ_CP009273 1138163 1138177 15 2 [1] [1] 2 rne ribonuclease E
* * ÷ NZ_CP009273 1143376 1143421 46 2 [1] [1] 2 plsX phosphate acyltransferase PlsX
* * ÷ NZ_CP009273 1144774 1144826 53 2 [0] [1] 2 fabH beta‑ketoacyl‑ACP synthase III
* * ÷ NZ_CP009273 1145065 1145104 40 2 [1] [1] 3 fabH beta‑ketoacyl‑ACP synthase III
* * ÷ NZ_CP009273 1149032 1149035 4 2 [1] [1] 2 pabC aminodeoxychorismate lyase
* * ÷ NZ_CP009273 1155205 1155225 21 2 [1] [0] 2 fhuE ferric‑rhodotorulic acid/ferric‑coprogen receptor FhuE
* * ÷ NZ_CP009273 1161431 1161435 5 2 [1] [0] 2 ycfP/ndh alpha/beta hydrolase YcfP/NADH‑quinone dehydrogenase
* * ÷ NZ_CP009273 1161479 1161533 55 2 [0] [0] 2 ycfP/ndh alpha/beta hydrolase YcfP/NADH‑quinone dehydrogenase
* * ÷ NZ_CP009273 1163591 1163608 18 2 [1] [1] 4 [ycfJ] [ycfJ]
* * ÷ NZ_CP009273 1163739 1163758 20 2 [1] [0] 2 comR TetR family copper‑responsive transcriptional repressor ComR
* * ÷ NZ_CP009273 1165741 1165750 10 2 [0] [1] 3 ldtC L,D‑transpeptidase LdtC
* * ÷ NZ_CP009273 1167419 1167435 17 2 [1] [0] 2 mfd transcription‑repair coupling factor
* * ÷ NZ_CP009273 1169506 1169554 49 2 [1] [1] 3 [ycfT] [ycfT]
* * ÷ NZ_CP009273 1176873 1176969 97 2 [1] [0] 2 ymfA DUF3592 domain‑containing protein
* * ÷ NZ_CP009273 1192630 1192774 145 3 [1] [1] 5 ymfD class I SAM‑dependent methyltransferase
* * ÷ NZ_CP009273 1194277 1194330 54 2 [1] [1] 3 lit cell death peptidase Lit
* * ÷ NZ_CP009273 1203744 1203824 81 2 [1] [1] 2 tfaP tail assembly chaperone
* * ÷ NZ_CP009273 1205671 1205700 30 2 [1] [1] 2 [pinE] [pinE]
* * ÷ NZ_CP009273 1207503 1207581 79 2 [1] [1] 2 iraM/BW25113_RS25985 anti‑adapter protein IraM/protein YmgK
* * ÷ NZ_CP009273 1209588 1209628 41 2 [1] [1] 2 bluR/bluF DNA‑binding transcriptional repressor BluR/blue light‑responsive regulator BluF
* * ÷ NZ_CP009273 1211494 1211576 83 2 [1] [0] 3 [ymgA] [ymgA]
* * ÷ NZ_CP009273 1215210 1215218 9 2 [0] [0] 2 BW25113_RS06070/BW25113_RS25990 hypothetical protein/autotransporter outer membrane beta‑barrel domain‑containing protein
* * ÷ NZ_CP009273 1218153 1218233 81 2 [1] [1] 2 ymgG glycine zipper domain‑containing protein
* * ÷ NZ_CP009273 1224031 1224057 27 2 [0] [1] 2 ycgM fumarylacetoacetate hydrolase family protein
* * ÷ NZ_CP009273 1226798 1226915 118 2 [1] [1] 2 umuC DNA polymerase V catalytic protein
* * ÷ NZ_CP009273 1227032 1227085 54 3 [1] [1] 3 umuC DNA polymerase V catalytic protein
* * ÷ NZ_CP009273 1227194 1227226 33 2 [0] [1] 3 umuC DNA polymerase V catalytic protein
* * ÷ NZ_CP009273 1227376 1227396 21 2 [0] [1] 2 umuC DNA polymerase V catalytic protein
* * ÷ NZ_CP009273 1228311 1228321 11 2 [1] [0] 2 dsbB disulfide bond formation protein DsbB
* * ÷ NZ_CP009273 1229225 1229292 68 2 [1] [0] 2 nhaB Na(+)/H(+) antiporter NhaB
* * ÷ NZ_CP009273 1236218 1236261 44 2 [1] [1] 3 cvrA potassium/proton antiporter
* * ÷ NZ_CP009273 1237697 1237732 36 2 [0] [0] 3 ldcA muramoyltetrapeptide carboxypeptidase
* * ÷ NZ_CP009273 1239163 1239209 47 2 [1] [1] 2 emtA membrane‑bound lytic murein transglycosylase EmtA
* * ÷ NZ_CP009273 1240874 1240887 14 2 [1] [0] 2 BW25113_RS06225 hypothetical protein
* * ÷ NZ_CP009273 1243923 1243943 21 2 [1] [1] 2 dhaM dihydroxyacetone kinase phosphoryl donor subunit DhaM
* * ÷ NZ_CP009273 1244722 1244789 68 2 [1] [1] 4 dhaL dihydroxyacetone kinase subunit DhaL
* * ÷ NZ_CP009273 1247233 1247299 67 2 [1] [1] 5 dhaR dihydroxyacetone kinase operon transcriptional regulator DhaR
* * ÷ NZ_CP009273 1253700 1253777 78 2 [1] [1] 2 pth aminoacyl‑tRNA hydrolase
* * ÷ NZ_CP009273 1260738 1260763 26 3 [0] [1] 2 prfA peptide chain release factor 1
* * ÷ NZ_CP009273 1265455 1265495 41 3 [1] [1] 2 BW25113_RS06335/BW25113_RS06340 type I toxin‑antitoxin system toxin Ldr family protein/type I toxin‑antitoxin system toxin Ldr family protein
* * ÷ NZ_CP009273 1266622 1266644 23 2 [1] [1] 2 chaA sodium‑potassium/proton antiporter ChaA
* * ÷ NZ_CP009273 1267915 1268032 118 2 [1] [1] 2 [chaC] [chaC]
* * ÷ NZ_CP009273 1275702 1275742 41 3 [1] [1] 2 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1276535 1276548 14 2 [1] [1] 2 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1281293 1281309 17 2 [0] [1] 3 [narJ]–[narI] [narJ],[narI]
* * ÷ NZ_CP009273 1283859 1283868 10 2 [1] [0] 3 purU formyltetrahydrofolate deformylase
* * ÷ NZ_CP009273 1290089 1290159 71 2 [0] [1] 3 BW25113_RS06460 IS4 family transposase
* * ÷ NZ_CP009273 1291673 1291709 37 2 [1] [1] 3 adhE bifunctional acetaldehyde‑CoA/alcohol dehydrogenase
* * ÷ NZ_CP009273 1303808 1303875 68 2 [1] [1] 3 kch voltage‑gated potassium channel protein
* * ÷ NZ_CP009273 1305425 1305438 14 4 [0] [1] 2 tonB TonB system transport protein TonB
* * ÷ NZ_CP009273 1306915 1306971 57 2 [0] [1] 3 yciB septation protein A
* * ÷ NZ_CP009273 1307997 1308055 59 2 [0] [1] 2 [BW25113_RS25555] [BW25113_RS25555]
* * ÷ NZ_CP009273 1310316 1310360 45 2 [1] [1] 2 yciG/trpA general stress protein/tryptophan synthase subunit alpha
* * ÷ NZ_CP009273 1326883 1326954 72 3 [1] [0] 2 topA type I DNA topoisomerase
* * ÷ NZ_CP009273 1330219 1330272 54 2 [1] [1] 3 acnA aconitate hydratase AcnA
* * ÷ NZ_CP009273 1334760 1334793 34 2 [1] [0] 2 lapA lipopolysaccharide assembly protein LapA
* * ÷ NZ_CP009273 1336015 1336026 12 3 [1] [0] 2 lapB/pyrF lipopolysaccharide assembly protein LapB/orotidine‑5'‑phosphate decarboxylase
* * ÷ NZ_CP009273 1340949 1341086 138 2 [1] [1] 2 [pdeR]–[BW25113_RS25050] [pdeR],[BW25113_RS25050]
* * ÷ NZ_CP009273 1348958 1348987 30 2 [1] [1] 2 sapB putrescine ABC transporter permease SapB
* * ÷ NZ_CP009273 1350258 1350324 67 2 [1] [1] 2 sapA peptide ABC transporter substrate‑binding protein SapA
* * ÷ NZ_CP009273 1350587 1350642 56 2 [1] [1] 2 sapA peptide ABC transporter substrate‑binding protein SapA
* * ÷ NZ_CP009273 1355611 1355654 44 2 [1] [1] 2 puuD gamma‑glutamyl‑gamma‑aminobutyrate hydrolase
* * ÷ NZ_CP009273 1358269 1358310 42 2 [1] [1] 2 puuC aldehyde dehydrogenase PuuC
* * ÷ NZ_CP009273 1360786 1360851 66 2 [1] [0] 2 puuE 4‑aminobutyrate transaminase
* * ÷ NZ_CP009273 1361233 1361238 6 2 [1] [1] 2 pspF phage shock protein operon transcriptional activator
* * ÷ NZ_CP009273 1361422 1361467 46 2 [1] [1] 2 pspF phage shock protein operon transcriptional activator
* * ÷ NZ_CP009273 1363751 1363924 174 2 [1] [1] 2 [pspD] [pspD]
* * ÷ NZ_CP009273 1365493 1365525 33 2 [1] [1] 3 ycjM glucosylglycerate phosphorylase
* * ÷ NZ_CP009273 1369504 1369529 26 2 [1] [0] 2 ycjQ zinc‑binding alcohol dehydrogenase
* * ÷ NZ_CP009273 1382671 1382716 46 2 [1] [1] 2 tpx thiol peroxidase
* * ÷ NZ_CP009273 1395571 1395601 31 3 [1] [1] 2 abgT p‑aminobenzoyl‑glutamate transporter
* * ÷ NZ_CP009273 1397424 1397520 97 2 [1] [0] 2 [abgB]–[abgA] [abgB],[abgA]
* * ÷ NZ_CP009273 1410180 1410212 33 5 [1] [1] 2 recE exodeoxyribonuclease VIII
* * ÷ NZ_CP009273 1411173 1411224 52 2 [1] [1] 3 recE exodeoxyribonuclease VIII
* * ÷ NZ_CP009273 1412259 1412282 24 2 [1] [1] 2 [BW25113_RS07100]–[kilR] [BW25113_RS07100],[kilR]
* * ÷ NZ_CP009273 1415826 1415888 63 2 [1] [1] 2 ydaU YdaU family protein
* * ÷ NZ_CP009273 1416411 1416430 20 2 [1] [1] 2 ydaV ATP‑binding protein
* * ÷ NZ_CP009273 1416890 1416915 26 2 [1] [1] 2 ydaV ATP‑binding protein
* * ÷ NZ_CP009273 1417922 1417949 28 2 [1] [1] 2 BW25113_RS26130/trkG hypothetical protein/Trk system potassium transporter TrkG
* * ÷ NZ_CP009273 1418730 1418732 3 2 [0] [1] 2 trkG Trk system potassium transporter TrkG
* * ÷ NZ_CP009273 1419518 1419540 23 2 [1] [1] 2 trkG/ynaK Trk system potassium transporter TrkG/ParB/Srx family N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1421273 1421311 39 3 [0] [0] 2 ynaA phage tail length tape measure family protein
* * ÷ NZ_CP009273 1424052 1424115 64 3 [1] [1] 2 stfR prophage tail fiber N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1424565 1424618 54 3 [1] [1] 2 stfR prophage tail fiber N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1427962–1428293 1428324 32–363 2 [1] [1] 2 [ydfK] [ydfK]
* * ÷ NZ_CP009273 1432249 1432354 106 5 [1] [1] 2 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1437312 1437328 17 3 [1] [1] 2 ydbH YdbH family protein
* * ÷ NZ_CP009273 1439155 1439245 91 3 [1] [1] 2 ydbH YdbH family protein
* * ÷ NZ_CP009273 1440625 1440647 23 2 [1] [1] 2 [feaR] [feaR]
* * ÷ NZ_CP009273 1442616 1442635 20 2 [0] [1] 2 feaB phenylacetaldehyde dehydrogenase
* * ÷ NZ_CP009273 1448017 1448038 22 2 [1] [1] 2 paaZ/paaA phenylacetic acid degradation bifunctional protein PaaZ/1,2‑phenylacetyl‑CoA epoxidase subunit A
* * ÷ NZ_CP009273 1448302 1448312 11 3 [0] [0] 2 paaA 1,2‑phenylacetyl‑CoA epoxidase subunit A
* * ÷ NZ_CP009273 1456824 1456827 4 2 [0] [1] 2 paaF phenylacetate‑‑CoA ligase
* * ÷ NZ_CP009273 1458916 1458974 59 2 [1] [1] 2 paaY phenylacetic acid degradation protein PaaY
* * ÷ NZ_CP009273 1459173 1459183 11 2 [1] [0] 2 paaY phenylacetic acid degradation protein PaaY
* * ÷ NZ_CP009273 1459312 1459322 11 2 [1] [0] 2 [paaY] [paaY]
* * ÷ NZ_CP009273 1477030 1477037 8 2 [1] [1] 3 azoR FMN‑dependent NADH‑azoreductase
* * ÷ NZ_CP009273 1480998 1481020 23 3 [0] [1] 2 hrpA ATP‑dependent RNA helicase HrpA
* * ÷ NZ_CP009273 1482209 1482255 47 2 [1] [1] 2 ydcF YdcF family protein
* * ÷ NZ_CP009273 1485146 1485224 79 2 [1] [1] 2 [cybB] [cybB]
* * ÷ NZ_CP009273 1486463 1486523 61 2 [1] [1] 3 BW25113_RS26140/trg hypothetical protein/methyl‑accepting chemotaxis protein Trg
* * ÷ NZ_CP009273 1490975 1491018 44 2 [1] [1] 2 ydcJ/opgD VOC family protein/glucan biosynthesis protein OpgD
* * ÷ NZ_CP009273 1494727 1494737 11 3 [0] [1] 2 ydcK/tehA YdcK family protein/dicarboxylate transporter/tellurite‑resistance protein TehA
* * ÷ NZ_CP009273 1494826 1494829 4 2 [1] [0] 3 ydcK/tehA YdcK family protein/dicarboxylate transporter/tellurite‑resistance protein TehA
* * ÷ NZ_CP009273 1499232 1499253 22 3 [1] [0] 3 ydcO BenE family transporter YdcO
* * ÷ NZ_CP009273 1508156 1508167 12 2 [1] [1] 5 ydcU ABC transporter permease
* * ÷ NZ_CP009273 1517024 1517050 27 2 [1] [0] 2 yncD TonB‑dependent receptor
* * ÷ NZ_CP009273 1524417 1524472 56 2 [1] [1] 5 BW25113_RS26145 hypothetical protein
* * ÷ NZ_CP009273 1527540 1527573 34 2 [1] [0] 2 yddH flavin reductase family protein
* * ÷ NZ_CP009273 1535166 1535216 51 2 [1] [1] 2 narZ nitrate reductase Z subunit alpha
* * ÷ NZ_CP009273 1536161 1536254 94 2 [1] [1] 2 narZ nitrate reductase Z subunit alpha
* * ÷ NZ_CP009273 1539254 1539318 65 2 [1] [1] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1540387 1540419 33 2 [1] [0] 2 yddL/yddG porin/aromatic amino acid efflux DMT transporter YddG
* * ÷ NZ_CP009273 1544832 1544856 25 2 [1] [0] 2 fdnH formate dehydrogenase N subunit beta
* * ÷ NZ_CP009273 1550678 1550740 63 3 [1] [1] 3 bdm/osmC biofilm‑dependent modulation protein/peroxiredoxin OsmC
* * ÷ NZ_CP009273 1555083 1555151 69 2 [1] [1] 2 ddpB ABC transporter permease
* * ÷ NZ_CP009273 1566238 1566241 4 2 [0] [0] 2 gadB glutamate decarboxylase
* * ÷ NZ_CP009273 1568041 1568112 72 2 [1] [0] 2 pqqL insulinase family protein
* * ÷ NZ_CP009273 1568598 1568654 57 2 [1] [1] 4 pqqL insulinase family protein
* * ÷ NZ_CP009273 1573619 1573652 34 3 [1] [0] 2 yddA/BW25113_RS25610 ABC transporter ATP‑binding protein/permease/protein YneP
* * ÷ NZ_CP009273 1574972 1575031 60 3 [1] [1] 3 ydeM anaerobic sulfatase maturase
* * ÷ NZ_CP009273 1578587 1578616 30 3 [0] [0] 3 ydeP acid resistance putative oxidoreductase YdeP
* * ÷ NZ_CP009273 1584323 1584367 45 2 [1] [1] 2 [ydeT] [ydeT]
* * ÷ NZ_CP009273 1588178 1588236 59 2 [1] [1] 2 BW25113_RS07915 ECSE_1600 family autotransporter
* * ÷ NZ_CP009273 1592426 1592436 11 2 [0] [0] 2 BW25113_RS07915/lsrK ECSE_1600 family autotransporter/autoinducer‑2 kinase
* * ÷ NZ_CP009273 1592544 1592622 79 2 [1] [1] 2 BW25113_RS07915/lsrK ECSE_1600 family autotransporter/autoinducer‑2 kinase
* * ÷ NZ_CP009273 1593700 1593743 44 2 [1] [1] 2 lsrK autoinducer‑2 kinase
* * ÷ NZ_CP009273 1595165 1595192 28 2 [1] [0] 2 lsrR transcriptional regulator LsrR
* * ÷ NZ_CP009273 1596742 1596803 62 2 [1] [1] 2 lsrA autoinducer 2 ABC transporter ATP‑binding protein LsrA
* * ÷ NZ_CP009273 1600555 1600574 20 2 [1] [0] 2 lsrF 3‑hydroxy‑5‑phosphonooxypentane‑2,4‑dione thiolase
* * ÷ NZ_CP009273 1617718 1617746 29 4 [1] [1] 2 dgcZ diguanylate cyclase DgcZ
* * ÷ NZ_CP009273 1618311 1618328 18 2 [1] [1] 3 dgcZ/ydeI diguanylate cyclase DgcZ/YdeI family stress tolerance OB fold protein
* * ÷ NZ_CP009273 1620620 1620639 20 2 [1] [0] 2 dcp peptidyl‑dipeptidase Dcp
* * ÷ NZ_CP009273 1634952 1635037 86 2 [1] [0] 2 essD/ynfU phage lysis protein EssD/putative zinc‑binding protein YnfU
* * ÷ NZ_CP009273 1635901 1635935 35 2 [1] [1] 3 cspB/cspF cold shock‑like protein CspB/cold shock‑like protein CspF
* * ÷ NZ_CP009273 1639243 1639263 21 2 [1] [1] 2 BW25113_RS08190/hokD hypothetical protein/type I toxin‑antitoxin system toxin HokD
* * ÷ NZ_CP009273 1643894 1643894 1 3 [0] [0] 2 dicB cell division inhibition protein DicB
* * ÷ NZ_CP009273 1644134 1644139 6 4 [0] [0] 2 ydfD lysis protein YdfD
* * ÷ NZ_CP009273 1645983 1646002 20 2 [0] [1] 2 BW25113_RS25635 tyrosine‑type recombinase/integrase
* * ÷ NZ_CP009273 1650771 1650834 64 2 [1] [1] 2 speG spermidine N1‑acetyltransferase
* * ÷ NZ_CP009273 1654075 1654164 90 2 [1] [1] 3 ynfE dimethyl sulfoxide reductase subunit A
* * ÷ NZ_CP009273 1657590 1657669 80 4 [0] [1] 3 dmsB dimethylsulfoxide reductase subunit B
* * ÷ NZ_CP009273 1662659 1662682 24 2 [1] [0] 2 mlc DNA‑binding transcriptional repressor Mlc
* * ÷ NZ_CP009273 1663812 1663889 78 3 [0] [1] 3 [ynfL] [ynfL]
* * ÷ NZ_CP009273 1668034 1668054 21 2 [0] [1] 2 mdtJ/tqsA multidrug/spermidine efflux SMR transporter subunit MdtJ/AI‑2 transporter TqsA
* * ÷ NZ_CP009273 1669659 1669680 22 2 [1] [1] 3 pntB Re/Si‑specific NAD(P)(+) transhydrogenase subunit beta
* * ÷ NZ_CP009273 1671440 1671504 65 2 [1] [1] 2 pntA Re/Si‑specific NAD(P)(+) transhydrogenase subunit alpha
* * ÷ NZ_CP009273 1683548 1683662 115 2 [1] [1] 2 manA mannose‑6‑phosphate isomerase
* * ÷ NZ_CP009273 1684285 1684368 84 2 [1] [0] 2 ydgA YdgA family protein
* * ÷ NZ_CP009273 1685741 1685766 26 2 [1] [1] 2 ydgA/uidC YdgA family protein/glucuronide uptake porin UidC
* * ÷ NZ_CP009273 1687123 1687248 126 3 [1] [1] 2 [uidB] [uidB]
* * ÷ NZ_CP009273 1687513 1687559 47 2 [1] [1] 2 uidB glucuronide transporter
* * ÷ NZ_CP009273 1692105 1692173 69 2 [1] [1] 3 hdhA 7‑alpha‑hydroxysteroid dehydrogenase
* * ÷ NZ_CP009273 1694427 1694491 65 3 [1] [1] 2 malX PTS maltose transporter subunit IICB
* * ÷ NZ_CP009273 1694955 1694973 19 2 [0] [1] 2 malX PTS maltose transporter subunit IICB
* * ÷ NZ_CP009273 1699160 1699171 12 4 [1] [1] 2 blr/ydgT division septum protein Blr/transcription modulator YdgT
* * ÷ NZ_CP009273 1700909 1700934 26 2 [1] [1] 2 rsxB electron transport complex subunit RsxB
* * ÷ NZ_CP009273 1701710 1701723 14 2 [0] [1] 2 rsxC electron transport complex subunit RsxC
* * ÷ NZ_CP009273 1705969 1706009 41 4 [1] [0] 2 nth endonuclease III
* * ÷ NZ_CP009273 1712785 1712854 70 3 [1] [1] 3 anmK anhydro‑N‑acetylmuramic acid kinase
* * ÷ NZ_CP009273 1719077 1719143 67 2 [0] [1] 2 ydhF aldo/keto reductase family oxidoreductase
* * ÷ NZ_CP009273 1719281 1719365 85 2 [1] [1] 2 ydhF aldo/keto reductase family oxidoreductase
* * ÷ NZ_CP009273 1720021 1720084 64 2 [1] [0] 3 ydhL DUF1289 domain‑containing protein
* * ÷ NZ_CP009273 1720814 1720824 11 2 [0] [1] 2 nemR DNA‑binding transcriptional regulator NemR
* * ÷ NZ_CP009273 1725519 1725630 112 3 [1] [1] 2 lhr ATP‑dependent helicase
* * ÷ NZ_CP009273 1728571 1728608 38 2 [1] [1] 2 grxD/mepH monothiol glutaredoxin 4/peptidoglycan DD‑endopeptidase MepH
* * ÷ NZ_CP009273 1728784 1728921 138 2 [1] [1] 2 mepH peptidoglycan DD‑endopeptidase MepH
* * ÷ NZ_CP009273 1748968 1749114 147 3 [0] [1] 2 ydhY/fumD ferredoxin‑like protein/fumarate hydratase FumD
* * ÷ NZ_CP009273 1751867 1751888 22 3 [1] [1] 2 lpp murein lipoprotein Lpp
* * ÷ NZ_CP009273 1764372 1764481 110 2 [1] [1] 2 [ydiK] [ydiK]
* * ÷ NZ_CP009273 1764621 1764679 59 2 [1] [1] 2 [rprA] [rprA]
* * ÷ NZ_CP009273 1769674 1769754 81 3 [1] [1] 4 [aroD] [aroD]
* * ÷ NZ_CP009273 1772919 1772999 81 2 [1] [1] 2 ydiP AraC family transcriptional regulator
* * ÷ NZ_CP009273 1778326 1778369 44 2 [1] [1] 2 fadK medium‑chain fatty‑acid‑‑CoA ligase
* * ÷ NZ_CP009273 1781601 1781674 74 2 [0] [1] 2 ppsA/ppsR phosphoenolpyruvate synthase/posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR
* * ÷ NZ_CP009273 1785731 1785749 19 2 [1] [0] 2 ydiV anti‑FlhDC factor
* * ÷ NZ_CP009273 1797589 1797639 51 3 [1] [1] 5 espL1 type III secretion system effector EspL1
* * ÷ NZ_CP009273 1800485 1800564 80 2 [1] [1] 3 ydiY/pfkB YdiY family protein/6‑phosphofructokinase II
* * ÷ NZ_CP009273 1800794 1800877 84 3 [1] [0] 2 pfkB 6‑phosphofructokinase II
* * ÷ NZ_CP009273 1801362 1801398 37 2 [1] [0] 3 pfkB 6‑phosphofructokinase II
* * ÷ NZ_CP009273 1804427 1804437 11 2 [1] [1] 2 hxpB/ydjM hexitol phosphatase HxpB/metal‑dependent hydrolase
* * ÷ NZ_CP009273 1806946 1807137 192 3 [1] [1] 3 BW25113_RS09050 hypothetical protein
* * ÷ NZ_CP009273 1807526 1807600 75 2 [1] [1] 2 BW25113_RS09050/cedA hypothetical protein/cell division activator CedA
* * ÷ NZ_CP009273 1821711 1821734 24 2 [1] [1] 2 astB N‑succinylarginine dihydrolase
* * ÷ NZ_CP009273 1837184 1837241 58 2 [1] [1] 2 gdhA NADP‑specific glutamate dehydrogenase
* * ÷ NZ_CP009273 1848079 1848094 16 2 [1] [1] 2 ydjE MFS transporter
* * ÷ NZ_CP009273 1849111 1849120 10 2 [1] [1] 2 [ydjF] [ydjF]
* * ÷ NZ_CP009273 1852932 1853069 138 2 [1] [1] 2 ydjJ NAD(P)‑dependent alcohol dehydrogenase
* * ÷ NZ_CP009273 1856416 1856431 16 3 [1] [1] 2 msrB peptide‑methionine (R)‑S‑oxide reductase MsrB
* * ÷ NZ_CP009273 1861818 1861858 41 2 [1] [1] 2 yeaG protein kinase YeaG
* * ÷ NZ_CP009273 1864612 1864675 64 2 [1] [1] 2 [cdgI] [cdgI]
* * ÷ NZ_CP009273 1877336 1877431 96 2 [1] [1] 3 [yeaV] [yeaV]
* * ÷ NZ_CP009273 1888041 1888051 11 2 [1] [0] 2 yoaB/yoaC RidA family protein/DUF1889 family protein
* * ÷ NZ_CP009273 1893732 1893799 68 2 [1] [1] 3 pdeD cyclic diguanylate phosphodiesterase
* * ÷ NZ_CP009273 1899663 1899678 16 4 [1] [1] 3 yobD/mntP DUF986 family protein/manganese efflux pump MntP
* * ÷ NZ_CP009273 1901145 1901207 63 2 [1] [1] 2 rlmA 23S rRNA (guanine(745)‑N(1))‑methyltransferase
* * ÷ NZ_CP009273 1908821 1908908 88 2 [1] [1] 3 prc carboxy terminal‑processing peptidase
* * ÷ NZ_CP009273 1928188 1928232 45 2 [1] [1] 2 edd phosphogluconate dehydratase
* * ÷ NZ_CP009273 1932634 1932675 42 2 [1] [1] 3 pyk pyruvate kinase
* * ÷ NZ_CP009273 1933622 1933664 43 3 [1] [1] 2 lpxM lauroyl‑Kdo(2)‑lipid IV(A) myristoyltransferase
* * ÷ NZ_CP009273 1952516 1952619 104 2 [1] [1] 2 torY/cutC NapC/NirT family cytochrome c/copper homeostasis protein CutC
* * ÷ NZ_CP009273 1961126 1961126 1 2 [0] [0] 2 cheZ protein phosphatase CheZ
* * ÷ NZ_CP009273 1965167 1965198 32 2 [1] [1] 2 tap methyl‑accepting chemotaxis protein IV
* * ÷ NZ_CP009273 1965331 1965341 11 2 [1] [1] 2 tar methyl‑accepting chemotaxis protein II
* * ÷ NZ_CP009273 1965837 1965857 21 5 [1] [1] 2 tar methyl‑accepting chemotaxis protein II
* * ÷ NZ_CP009273 1970274 1970307 34 3 [1] [0] 2 motB flagellar motor protein MotB
* * ÷ NZ_CP009273 1972752 1972777 26 17 [0] [1] 2 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1973022 1973024 3 2 [1] [0] 2 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1978972 1979006 35 3 [1] [1] 2 araF arabinose ABC transporter substrate‑binding protein AraF
* * ÷ NZ_CP009273 1979872 1979900 29 2 [1] [1] 3 araF/ftnB arabinose ABC transporter substrate‑binding protein AraF/non‑heme ferritin‑like protein
* * ÷ NZ_CP009273 1982081 1982161 81 2 [0] [1] 3 yecR/ftnA YecR‑like lipofamily protein/non‑heme ferritin
* * ÷ NZ_CP009273 1991243 1991245 3 3 [0] [0] 3 yecC L‑cystine ABC transporter ATP‑binding protein YecC
* * ÷ NZ_CP009273 1995335 1995372 38 3 [1] [1] 2 fliA/fliC RNA polymerase sigma factor FliA/H48 family flagellin FliC
* * ÷ NZ_CP009273 1999616 1999750 135 3 [1] [1] 2 [amyA] [amyA]
* * ÷ NZ_CP009273 2005829 2005852 24 2 [0] [1] 2 [BW25113_RS10120] [BW25113_RS10120]
* * ÷ NZ_CP009273 2009159 2009199 41 2 [0] [1] 2 fliG flagellar motor switch protein FliG
* * ÷ NZ_CP009273 2016528 2016558 31 2 [1] [1] 2 fliR flagellar biosynthetic protein FliR
* * ÷ NZ_CP009273 2017758 2017794 37 2 [0] [1] 3 rcsA transcriptional regulator RcsA
* * ÷ NZ_CP009273 2027056 2027113 58 3 [1] [1] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2027278 2027426 149 3 [0] [1] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2030500 2030524 25 3 [1] [1] 3 hprS two‑component system sensor histidine kinase HprS
* * ÷ NZ_CP009273 2038290 2038355 66 2 [1] [1] 2 BW25113_RS10330/yeeJ tRNA‑Asn/inverse autotransporter adhesin YeeJ
* * ÷ NZ_CP009273 2040655 2040665 11 3 [1] [1] 2 yeeJ inverse autotransporter adhesin YeeJ
* * ÷ NZ_CP009273 2050112 2050275 164 2 [1] [1] 3 amn/yeeN AMP nucleosidase/YebC/PmpR family DNA‑binding transcriptional regulator
* * ÷ NZ_CP009273 2053505 2053558 54 2 [1] [0] 2 cbl HTH‑type transcriptional regulator Cbl
* * ÷ NZ_CP009273 2056973 2057007 35 2 [1] [0] 2 cobT nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
* * ÷ NZ_CP009273 2061962 2062006 45 2 [0] [1] 2 BW25113_RS10415/BW25113_RS24005 IS5‑like element IS5 family transposase/TonB‑dependent receptor plug domain‑containing protein
* * ÷ NZ_CP009273 2083103 2083137 35 2 [1] [1] 3 yefM YoeB‑YefM toxin‑antitoxin system antitoxin YefM
* * ÷ NZ_CP009273 2084164 2084191 28 2 [0] [1] 3 hisG ATP phosphoribosyltransferase
* * ÷ NZ_CP009273 2087760 2087771 12 3 [0] [1] 2 hisB bifunctional histidinol‑phosphatase/imidazoleglycerol‑phosphate dehydratase HisB
* * ÷ NZ_CP009273 2088582 2088621 40 3 [1] [1] 2 [hisH]–[hisA] [hisH],[hisA]
* * ÷ NZ_CP009273 2099158 2099170 13 2 [1] [1] 2 wbbI beta‑1,6‑galactofuranosyltransferase
* * ÷ NZ_CP009273 2101587 2101609 23 2 [1] [1] 2 glf UDP‑galactopyranose mutase
* * ÷ NZ_CP009273 2102191 2102212 22 2 [0] [1] 2 wzx O16 family O‑antigen flippase
* * ÷ NZ_CP009273 2119726 2119808 83 2 [1] [1] 2 fcl GDP‑L‑fucose synthase
* * ÷ NZ_CP009273 2123923 2123933 11 3 [0] [0] 7 wcaD colanic acid polymerase WcaD
* * ÷ NZ_CP009273 2134383 2134400 18 2 [1] [0] 2 asmA outer membrane assembly protein AsmA
* * ÷ NZ_CP009273 2139947 2139956 10 3 [1] [1] 3 dgcE diguanylate cyclase
* * ÷ NZ_CP009273 2145201 2145266 66 2 [1] [1] 2 pphC protein‑serine/threonine phosphatase PphC
* * ÷ NZ_CP009273 2148816 2148921 106 3 [1] [1] 2 mdtB multidrug efflux RND transporter permease subunit MdtB
* * ÷ NZ_CP009273 2149189 2149246 58 2 [1] [1] 3 mdtB multidrug efflux RND transporter permease subunit MdtB
* * ÷ NZ_CP009273 2155312 2155324 13 2 [1] [1] 2 mdtD MFS transporter
* * ÷ NZ_CP009273 2155800 2155846 47 3 [1] [0] 2 mdtD MFS transporter
* * ÷ NZ_CP009273 2181060 2181115 56 2 [1] [1] 3 yehA putative fimbrial‑like adhesin protein
* * ÷ NZ_CP009273 2185135 2185166 32 2 [1] [0] 2 [yehD] [yehD]
* * ÷ NZ_CP009273 2185695 2185861 167 3 [1] [0] 2 [yehD] [yehD]
* * ÷ NZ_CP009273 2191574 2191606 33 2 [1] [0] 3 BW25113_RS25680 WGR and DUF4132 domain‑containing protein
* * ÷ NZ_CP009273 2193126 2193139 14 2 [0] [1] 2 BW25113_RS25680 WGR and DUF4132 domain‑containing protein
* * ÷ NZ_CP009273 2206132 2206174 43 3 [1] [0] 2 btsR two‑component system response regulator BtsR
* * ÷ NZ_CP009273 2210976 2211002 27 2 [1] [0] 2 yehY glycine betaine ABC transporter permease YehY
* * ÷ NZ_CP009273 2218357 2218423 67 2 [1] [0] 2 pbpG/yohC D‑alanyl‑D‑alanine endopeptidase/Yip1 family protein
* * ÷ NZ_CP009273 2220549 2220570 22 3 [1] [1] 2 yohF SDR family oxidoreductase
* * ÷ NZ_CP009273 2227236 2227264 29 2 [1] [0] 2 yeiS DUF2542 family protein
* * ÷ NZ_CP009273 2257225 2257235 11 4 [1] [0] 5 fruB/setB fused PTS fructose transporter subunit IIA/HPr protein/sugar efflux transporter SetB
* * ÷ NZ_CP009273 2270049 2270059 11 2 [1] [0] 3 yejF microcin C ABC transporter ATP‑binding protein YejF
* * ÷ NZ_CP009273 2274654 2274693 40 3 [1] [0] 2 radD DEAD/DEAH box helicase
* * ÷ NZ_CP009273 2286429 2286432 4 3 [0] [1] 2 dsbE thiol:disulfide interchange protein DsbE
* * ÷ NZ_CP009273 2287847 2287880 34 2 [0] [1] 2 ccmF cytochrome c‑type biogenesis heme lyase CcmF
* * ÷ NZ_CP009273 2296409 2296455 47 2 [1] [1] 3 napD chaperone NapD
* * ÷ NZ_CP009273 2297118 2297185 68 2 [1] [1] 2 BW25113_RS25870 hypothetical protein
* * ÷ NZ_CP009273 2304521 2304551 31 2 [1] [1] 2 apbE FAD:protein FMN transferase ApbE
* * ÷ NZ_CP009273 2304832 2304917 86 3 [1] [1] 2 apbE FAD:protein FMN transferase ApbE
* * ÷ NZ_CP009273 2306800 2306852 53 2 [1] [1] 2 ompC/rcsD porin OmpC/phosphotransferase RcsD
* * ÷ NZ_CP009273 2308759 2308814 56 3 [1] [1] 2 rcsD phosphotransferase RcsD
* * ÷ NZ_CP009273 2320545 2320565 21 2 [1] [1] 3 atoB acetyl‑CoA acetyltransferase
* * ÷ NZ_CP009273 2328546 2328553 8 2 [0] [1] 2 yfaA DUF2138 domain‑containing protein
* * ÷ NZ_CP009273 2368306 2368356 51 3 [1] [1] 2 menE o‑succinylbenzoate‑‑CoA ligase
* * ÷ NZ_CP009273 2370768 2370856 89 2 [1] [1] 2 menH 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
* * ÷ NZ_CP009273 2385416 2385458 43 4 [1] [1] 3 nuoM NADH‑quinone oxidoreductase subunit M
* * ÷ NZ_CP009273 2388504 2388544 41 4 [1] [1] 2 [nuoL]–[nuoK] [nuoL],[nuoK]
* * ÷ NZ_CP009273 2390651 2390679 29 2 [1] [1] 4 nuoH NADH‑quinone oxidoreductase subunit NuoH
* * ÷ NZ_CP009273 2400816 2400858 43 2 [1] [1] 3 lrhA/alaA transcriptional regulator LrhA/alanine transaminase AlaA
* * ÷ NZ_CP009273 2406439 2406482 44 2 [0] [1] 2 yfbV DUF412 domain‑containing protein
* * ÷ NZ_CP009273 2443394 2443399 6 2 [0] [1] 2 yfcO fimbrial adhesin YfcO
* * ÷ NZ_CP009273 2457489 2457534 46 2 [1] [1] 2 BW25113_RS12235 hypothetical protein
* * ÷ NZ_CP009273 2460214 2460224 11 2 [1] [0] 2 intS prophage integrase IntS
* * ÷ NZ_CP009273 2462809 2462974 166 2 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2466027 2466037 11 2 [0] [0] 2 yfdN PerC family transcriptional regulator
* * ÷ NZ_CP009273 2482691 2482708 18 2 [1] [1] 2 yfdE/yfdV CoA:oxalate CoA‑transferase/transporter YfdV
* * ÷ NZ_CP009273 2519073 2519089 17 4 [1] [0] 3 BW25113_RS12560 outer membrane protein
* * ÷ NZ_CP009273 2533649 2533704 56 2 [1] [1] 2 cysA sulfate/thiosulfate ABC transporter ATP‑binding protein CysA
* * ÷ NZ_CP009273 2534408 2534431 24 3 [1] [1] 3 cysW sulfate/thiosulfate ABC transporter permease CysW
* * ÷ NZ_CP009273 2540240 2540297 58 2 [1] [1] 3 murP PTS N‑acetylmuramic acid transporter subunit IIBC
* * ÷ NZ_CP009273 2584566 2584576 11 2 [0] [1] 2 ypfM/yffB protein YpfM/ArsC family reductase
* * ÷ NZ_CP009273 2605237 2605264 28 2 [1] [0] 2 [hyfR] [hyfR]
* * ÷ NZ_CP009273 2609209 2609247 39 2 [1] [1] 2 [yfgO] [yfgO]
* * ÷ NZ_CP009273 2616895 2616922 28 2 [1] [0] 2 ppk1 polyphosphate kinase 1
* * ÷ NZ_CP009273 2623001 2623087 87 2 [1] [1] 2 yfgG/yfgH YfgG family protein/glycine zipper 2TM domain‑containing protein
* * ÷ NZ_CP009273 2681687 2681724 38 3 [1] [1] 2 glrR two‑component system response regulator GlrR
* * ÷ NZ_CP009273 2687831 2687838 8 2 [1] [0] 2 purL phosphoribosylformylglycinamidine synthase
* * ÷ NZ_CP009273 2701154 2701190 37 2 [1] [1] 3 [rseC]–[rseB] [rseC],[rseB]
* * ÷ NZ_CP009273 2742856 2742886 31 2 [1] [1] 2 yfjD HlyC/CorC family transporter
* * ÷ NZ_CP009273 2747443 2747488 46 2 [1] [1] 2 yfjF RnfH family protein
* * ÷ NZ_CP009273 2753730 2753753 24 2 [0] [1] 2 yfjI YfjI family protein
* * ÷ NZ_CP009273 2768272 2768299 28 3 [1] [1] 3 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2778398 2778420 23 2 [1] [1] 2 BW25113_RS25705/BW25113_RS13825 DUF5507 domain‑containing protein/tRNA‑Ile
* * ÷ NZ_CP009273 2779693 2779731 39 2 [1] [1] 3 BW25113_RS13825/BW25113_RS26005 tRNA‑Ile/alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2791904 2791919 16 2 [0] [1] 3 stpA/alaE DNA‑binding protein StpA/L‑alanine exporter AlaE
* * ÷ NZ_CP009273 2893417 2893448 32 3 [1] [1] 2 ygcW SDR family oxidoreductase
* * ÷ NZ_CP009273 2897016 2897057 42 4 [1] [1] 3 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2898987 2899003 17 2 [0] [1] 2 BW25113_RS14445 hypothetical protein
* * ÷ NZ_CP009273 2945669 2945692 24 2 [1] [1] 3 recD exodeoxyribonuclease V subunit alpha
* * ÷ NZ_CP009273 3074016 3074025 10 2 [0] [0] 2 tkt transketolase
* * ÷ NZ_CP009273 3166363 3166400 38 4 [1] [1] 2 mdaB NADPH:quinone oxidoreductase MdaB
* * ÷ NZ_CP009273 3246169 3246212 44 2 [1] [1] 2 yhaH/yhaI DUF805 domain‑containing protein/DUF805 domain‑containing protein
* * ÷ NZ_CP009273 3261767 3261815 49 2 [1] [1] 3 [yhaC] [yhaC]
* * ÷ NZ_CP009273 3293283 3293293 11 7 [0] [0] 2 yhbP/yhbQ YhbP family protein/DNA damage response exodeoxyribonuclease YhbQ
* * ÷ NZ_CP009273 3354247 3354319 73 2 [1] [1] 2 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3354469 3354532 64 3 [0] [1] 3 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3439993 3440003 11 5 [0] [0] 3 rpsN 30S ribosomal protein S14
* * ÷ NZ_CP009273 3448995 3449025 31 2 [1] [1] 5 gspC type II secretion system protein GspC
* * ÷ NZ_CP009273 3489145 3489159 15 2 [1] [1] 2 nirB NADPH‑nitrite reductase large subunit
* * ÷ NZ_CP009273 3576543 3576550 8 3 [0] [1] 2 BW25113_RS17825 YrhA family protein
* * ÷ NZ_CP009273 3577954 3577968 15 3 [1] [0] 2 BW25113_RS25760/yrhB hypothetical protein/YrhB family protein
* * ÷ NZ_CP009273 3592853 3592887 35 2 [1] [1] 2 livJ branched chain amino acid ABC transporter substrate‑binding protein LivJ
* * ÷ NZ_CP009273 3623935 3623955 21 2 [1] [1] 2 yhiI HlyD family efflux transporter periplasmic adaptor subunit
* * ÷ NZ_CP009273 3627899 3627916 18 2 [1] [1] 4 BW25113_RS18065/yhiM YhiJ/YhiL family protein/DUF2776 domain‑containing protein
* * ÷ NZ_CP009273 3745310 3745330 21 2 [0] [0] 3 yiaT/yiaU MipA/OmpV family protein/LysR family transcriptional regulator
* * ÷ NZ_CP009273 3751255 3751376 122 3 [1] [1] 3 yiaY/selB L‑threonine dehydrogenase/selenocysteine‑specific translation elongation factor
* * ÷ NZ_CP009273 3796115 3796133 19 2 [0] [1] 2 waaO lipopolysaccharide 3‑alpha‑galactosyltransferase
* * ÷ NZ_CP009273 3797620 3797620 1 2 [0] [0] 2 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3946949 3946965 17 2 [1] [1] 2 ilvD dihydroxy‑acid dehydratase
* * ÷ NZ_CP009273 4080244 4080347 104 3 [1] [1] 2 fdhD/yiiG formate dehydrogenase accessory sulfurtransferase FdhD/YiiG family protein
* * ÷ NZ_CP009273 4233293 4233339 47 3 [1] [1] 2 malG maltose ABC transporter permease MalG
* * ÷ NZ_CP009273 4262025 4262065 41 2 [1] [1] 5 uvrA excinuclease ABC subunit UvrA
* * ÷ NZ_CP009273 4302913 4303010 98 2 [1] [1] 3 alsR/rpiB als operon DNA‑binding transcriptional repressor AlsR/bifunctional allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase RpiB
* * ÷ NZ_CP009273 4325074 4325089 16 2 [1] [0] 2 eptA phosphoethanolamine transferase EptA
* * ÷ NZ_CP009273 4466649 4466652 4 2 [0] [0] 2 BW25113_RS22080 hypothetical protein
* * ÷ NZ_CP009273 4466835 4466886 52 2 [1] [0] 2 BW25113_RS22080 hypothetical protein
* * ÷ NZ_CP009273 4546405 4546466 62 2 [1] [1] 2 yjiC/idlP YjfZ/YjiC family protein/iraD leader peptide IdlP
* * ÷ NZ_CP009273 4555711 4555720 10 2 [1] [0] 4 yjiM/yjiN double‑cubane‑cluster‑containing anaerobic reductase/DUF445 domain‑containing protein

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 15391 =NA (NA)8 (0.780) 5/158 0.5 89.4% intergenic (+93/‑54) dnaJ/BW25113_RS00080 molecular chaperone DnaJ/IS4‑like element IS421 family transposase
?NZ_CP009273 = 454255 1 (0.090)intergenic (+99/‑89) clpX/lon ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La
* ? NZ_CP009273 = 287112NA (NA)8 (0.740) 6/166 0.5 61.5% intergenic (‑55/‑99) BW25113_RS01405/BW25113_RS01410 IS1‑like element IS1B family transposase/hypothetical protein
?NZ_CP009273 1903038 = 5 (0.460)intergenic (‑15/‑144) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
* ? NZ_CP009273 360104 =NA (NA)16 (1.480) 13/166 0.1 50.0% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 16 (1.480)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 454243 =2 (0.180)9 (0.860) 8/160 0.3 82.4% intergenic (+87/‑101) clpX/lon ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La
?NZ_CP009273 = 604803 NA (NA)intergenic (+170/+112) BW25113_RS03025/entD IS4‑like element IS421 family transposase/enterobactin synthase subunit EntD
* ? NZ_CP009273 = 1046001NA (NA)8 (0.740) 8/166 0.3 66.7% intergenic (+15/+418) BW25113_RS05135/cspH IS1‑like element IS1D family transposase/cold shock‑like protein CspH
?NZ_CP009273 = 1903046 4 (0.370)intergenic (‑23/‑136) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
* ? NZ_CP009273 1203246 =7 (0.650)3 (0.340) 3/134 0.7 47.4% coding (290/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 1205075 = 1 (0.110)coding (40/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 19727510 (0.000)17 (1.570) 10/166 0.2 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 4532499 =2 (0.180)7 (0.730) 7/148 0.3 48.6% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 13 (1.350)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA