mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,754,231 | G→T | R127S (CGC→AGC) | selA ← | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 4,267,454 | C→T | R20C (CGC→TGC) | soxR → | redox‑sensitive transcriptional activator SoxR |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357569 | 589 | 7 [0] | [1] 2 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 647505 | 647568 | 64 | 2 [1] | [1] 2 | citC/dpiB | [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB |
| * | * | ÷ | NZ_CP009273 | 716404 | 716438 | 35 | 2 [1] | [1] 2 | BW25113_RS26090/kdpE | leader peptide SpeFL/two‑component system response regulator KdpE |
| * | * | ÷ | NZ_CP009273 | 833231 | 833243 | 13 | 2 [1] | [1] 2 | ybiJ | DUF1471 family protein YbiJ |
| * | * | ÷ | NZ_CP009273 | 902983 | 903003 | 21 | 3 [0] | [1] 3 | ybjT | SDR family oxidoreductase |
| * | * | ÷ | NZ_CP009273 | 1229260 | 1229274 | 15 | 2 [1] | [0] 3 | nhaB | Na(+)/H(+) antiporter NhaB |
| * | * | ÷ | NZ_CP009273 | 1281158 | 1281180 | 23 | 2 [1] | [1] 2 | narJ | nitrate reductase molybdenum cofactor assembly chaperone |
| * | * | ÷ | NZ_CP009273 | 1392077 | 1392099 | 23 | 2 [0] | [1] 3 | uspE | universal stress protein UspE |
| * | * | ÷ | NZ_CP009273 | 1521748 | 1521796 | 49 | 2 [1] | [1] 2 | yncH/BW25113_RS07645 | YncH family protein/RHS repeat protein |
| * | * | ÷ | NZ_CP009273 | 1600451 | 1600456 | 6 | 2 [0] | [0] 2 | lsrF | 3‑hydroxy‑5‑phosphonooxypentane‑2,4‑dione thiolase |
| * | * | ÷ | NZ_CP009273 | 1620814 | 1620841 | 28 | 2 [1] | [1] 2 | dcp | peptidyl‑dipeptidase Dcp |
| * | * | ÷ | NZ_CP009273 | 1683392 | 1683400 | 9 | 2 [1] | [0] 2 | manA | mannose‑6‑phosphate isomerase |
| * | * | ÷ | NZ_CP009273 | 1972752 | 1972760 | 9 | 23 [0] | [1] 2 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 44 (2.330) | 30/170 | 0.0 | 54.3% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 37 (1.960) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 5 (0.270) | 11 (0.720) | 10/138 | 0.4 | 73.2% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 4 (0.260) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 5 (0.270) | 7 (0.460) | 7/138 | 0.6 | 63.5% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 4 (0.260) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 23 (1.220) | 12/170 | 0.4 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | 4532499 = | 6 (0.320) | 10 (0.590) | 7/152 | 0.8 | 55.0% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 11 (0.650) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||