mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 30 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 497,028 | 0 | A | C | 61.5% | 4.6 / 10.6 | 13 | V556G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 497,031 | 0 | A | C | 61.5% | 0.9 / 10.4 | 13 | V555G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 3,363,673 | 0 | G | T | 61.5% | ‑2.1 / 15.3 | 13 | L13I (CTT→ATT) | nanK | N‑acetylmannosamine kinase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 61.5% | ‑3.9 / 22.6 | 26 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,941,183 | 0 | T | G | 60.0% | 12.1 / 21.1 | 20 | T49P (ACC→CCC) | hdfR | HTH‑type transcriptional regulator HdfR |
| * | NZ_CP009273 | 3,703,332 | 0 | A | C | 57.1% | 7.6 / 11.7 | 14 | G168G (GGT→GGG) | eptB | kdo(2)‑lipid A phosphoethanolamine 7''‑transferase |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 56.2% | 11.3 / 18.6 | 16 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 1,570,334 | 0 | C | A | 55.6% | 2.8 / 13.2 | 9 | D515Y (GAT→TAT) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 1,571,380 | 0 | A | C | 55.6% | 13.9 / 21.6 | 18 | V166G (GTA→GGA) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 3,977,450 | 0 | T | C | 55.6% | 9.1 / 19.6 | 18 | F378S (TTC→TCC) | aslB | anaerobic sulfatase maturase |
| * | NZ_CP009273 | 602,053 | 0 | A | G | 54.5% | 0.5 / 11.9 | 11 | W263R (TGG→CGG) | ybdK | YbdK family carboxylate‑amine ligase |
| * | NZ_CP009273 | 760,181 | 0 | G | C | 54.5% | 4.3 / 13.7 | 11 | P182P (CCG→CCC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 2,564,395 | 0 | T | G | 54.5% | 16.0 / 24.5 | 22 | N239T (AAC→ACC) | eutE | aldehyde dehydrogenase EutE |
| * | NZ_CP009273 | 297,075 | 0 | A | C | 53.8% | 9.7 / 13.0 | 13 | V175G (GTG→GGG) | paoB | aldehyde oxidoreductase FAD‑binding subunit PaoB |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 53.8% | ‑3.2 / 12.0 | 13 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 53.8% | 3.6 / 27.4 | 26 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 169,172 | 0 | C | G | 53.3% | 11.4 / 19.7 | 15 | G408G (GGC→GGG) | fhuB | Fe(3+)‑hydroxamate ABC transporter permease FhuB |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 53.3% | 2.5 / 14.9 | 15 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 4,501,865 | 0 | A | C | 53.3% | 9.7 / 15.3 | 15 | L123V (TTG→GTG) | fecD | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 52.9% | 5.5 / 17.6 | 17 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |