mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 77 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 497,028 | 0 | A | C | 62.5% | 4.3 / 15.9 | 16 | V556G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 497,031 | 0 | A | C | 62.5% | 6.1 / 16.3 | 16 | V555G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 1,350,458 | 0 | T | G | 62.5% | 5.7 / 15.3 | 16 | T304P (ACC→CCC) | sapA | peptide ABC transporter substrate‑binding protein SapA |
| * | NZ_CP009273 | 1,407,992 | 0 | A | T | 61.1% | ‑4.4 / 20.7 | 18 | Y2* (TAT→TAA) *65K (TAA→AAA) | rcbA ralR | double‑strand break reduction protein RcbA type I toxin‑antitoxin system endodeoxyribonuclease toxin RalR |
| * | NZ_CP009273 | 4,254,020 | 0 | A | G | 60.9% | 9.1 / 18.7 | 23 | I47T (ATC→ACC) | qorA | quinone oxidoreductase |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 57.9% | 2.6 / 20.3 | 19 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 497,036 | 0 | A | C | 56.2% | 10.4 / 17.3 | 16 | G553G (GGT→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 54.2% | 8.5 / 23.0 | 24 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 4,086,499 | 0 | C | A | 54.2% | 6.3 / 35.9 | 24 | V100V (GTG→GTT) | rhaM | L‑rhamnose mutarotase |
| * | NZ_CP009273 | 1,429,982 | 0 | C | A | 53.3% | 13.4 / 26.9 | 15 | intergenic (‑106/+35) | uspF/ompN | universal stress protein UspF/porin OmpN |
| * | NZ_CP009273 | 1,429,984 | 0 | G | A | 53.3% | 1.0 / 19.3 | 15 | intergenic (‑108/+33) | uspF/ompN | universal stress protein UspF/porin OmpN |
| * | NZ_CP009273 | 2,360,813 | 0 | C | T | 53.3% | 11.9 / 19.6 | 15 | F88F (TTC→TTT) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| * | NZ_CP009273 | 2,370,630 | 0 | A | C | 53.3% | 9.3 / 14.8 | 15 | Y148D (TAT→GAT) | menH | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 52.6% | 5.7 / 24.8 | 19 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 595,035 | 0 | T | G | 52.6% | 5.6 / 23.5 | 19 | V289G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 3,291,076 | 0 | A | C | 52.4% | 11.4 / 26.3 | 21 | V141G (GTG→GGG) | yraQ | permease |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 52.2% | 27.4 / 67.0 | 46 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 997,447 | 0 | T | G | 51.5% | 26.2 / 48.3 | 33 | V62G (GTA→GGA) | elfG | fimbrial protein |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 50.0% | 74.3 / 39.1 | 54 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 4,091,442 | 0 | G | T | 48.0% | 24.5 / 14.3 | 25 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |