mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,912 | G→T | W30C (TGG→TGT) | folA → | type 3 dihydrofolate reductase |
| RA | 214,743 | A→C | Y174D (TAC→GAC) | proS ← | proline‑‑tRNA ligase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,754,231 | G→T | R127S (CGC→AGC) | selA ← | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 4,267,454 | C→T | R20C (CGC→TGC) | soxR → | redox‑sensitive transcriptional activator SoxR |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 246249 | 246317 | 69 | 2 [1] | [1] 2 | BW25113_RS01160 | flagellar biosynthesis protein FlhA |
| * | * | ÷ | NZ_CP009273 | 356981 | 357585 | 605 | 2 [0] | [1] 3 | [lacA] | [lacA] |
| * | * | ÷ | NZ_CP009273 | 428544 | 428564 | 21 | 2 [1] | [1] 2 | nrdR | transcriptional regulator NrdR |
| * | * | ÷ | NZ_CP009273 | 578866 | 578874 | 9 | 4 [1] | [0] 2 | BW25113_RS26085/appY | tail fiber assembly protein/DNA‑binding transcriptional activator AppY |
| * | * | ÷ | NZ_CP009273 | 772519 | 772565 | 47 | 2 [1] | [0] 2 | tolA | cell envelope integrity protein TolA |
| * | * | ÷ | NZ_CP009273 | 1211811 | 1211820 | 10 | 2 [1] | [0] 2 | ymgA/ariR | two‑component‑system connector protein YmgA/biofilm/acid‑resistance regulator AriR |
| * | * | ÷ | NZ_CP009273 | 1354568 | 1354575 | 8 | 2 [1] | [0] 2 | puuA | glutamate‑putrescine ligase |
| * | * | ÷ | NZ_CP009273 | 1424195 | 1424207 | 13 | 2 [0] | [0] 2 | stfR | prophage tail fiber N‑terminal domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1633143 | 1633182 | 40 | 2 [0] | [1] 2 | cspI/rzpQ | cold shock protein CspI/DUF2514 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 2096861 | 2096868 | 8 | 2 [1] | [1] 2 | wbbL | N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL |
| * | * | ÷ | NZ_CP009273 | 3792663 | 3792733 | 71 | 2 [1] | [1] 2 | [waaU]–[waaZ] | [waaU],[waaZ] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 15391 = | NA (NA) | 18 (0.900) | 16/162 | 0.2 | 90.4% | intergenic (+93/‑54) | dnaJ/BW25113_RS00080 | molecular chaperone DnaJ/IS4‑like element IS421 family transposase |
| ? | NZ_CP009273 | = 454255 | 2 (0.100) | intergenic (+99/‑89) | clpX/lon | ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La | |||||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 27 (1.290) | 16/170 | 0.2 | 60.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 18 (0.860) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 454243 = | 8 (0.380) | 24 (1.190) | 21/164 | 0.1 | 75.7% | intergenic (+87/‑101) | clpX/lon | ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La |
| ? | NZ_CP009273 | = 604803 | NA (NA) | intergenic (+170/+112) | BW25113_RS03025/entD | IS4‑like element IS421 family transposase/enterobactin synthase subunit EntD | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 11 (0.530) | 7/168 | 1.0 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 24 (1.150) | 17/170 | 0.2 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | 4532499 = | 3 (0.140) | 9 (0.480) | 8/152 | 0.7 | 55.1% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 12 (0.640) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 4532507 | 3 (0.140) | 3 (0.160) | 3/152 | 1.7 | 29.0% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 12 (0.640) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||