mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 38 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,215,393 | 0 | A | G | 66.7% | 0.4 / 12.2 | 18 | D190G (GAT→GGT) | ebgR | transcriptional regulator EbgR |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 63.2% | 7.1 / 14.7 | 19 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 61.5% | 4.5 / 10.9 | 13 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 60.7% | ‑5.7 / 26.0 | 28 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 324,033 | 0 | T | G | 60.0% | 5.0 / 10.2 | 15 | T138P (ACC→CCC) | betB | betaine‑aldehyde dehydrogenase |
| * | NZ_CP009273 | 585,405 | 0 | G | T | 60.0% | 3.8 / 22.5 | 15 | Q336K (CAA→AAA) | nfrA | bacteriophage adsorption protein NfrA |
| * | NZ_CP009273 | 2,089,571 | 0 | A | G | 60.0% | 2.0 / 11.8 | 15 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 2,852,466 | 0 | T | G | 58.8% | 3.7 / 15.9 | 17 | V672G (GTG→GGG) | mutS | DNA mismatch repair protein MutS |
| * | NZ_CP009273 | 3,090,826 | 0 | T | G | 58.8% | 10.5 / 14.1 | 17 | G67G (GGT→GGG) | hemW | radical SAM family heme chaperone HemW |
| * | NZ_CP009273 | 2,828,692 | 0 | A | C | 58.3% | 7.1 / 12.5 | 12 | V698G (GTT→GGT) | hypF | carbamoyltransferase HypF |
| * | NZ_CP009273 | 585,390 | 0 | T | G | 57.1% | ‑3.3 / 15.3 | 14 | T341P (ACC→CCC) | nfrA | bacteriophage adsorption protein NfrA |
| * | NZ_CP009273 | 1,178,250 | 0 | A | C | 56.2% | 4.4 / 12.8 | 16 | G12G (GGT→GGG) | potD | spermidine/putrescine ABC transporter substrate‑binding protein PotD |
| * | NZ_CP009273 | 123,356 | 0 | T | G | 54.5% | 7.5 / 10.7 | 11 | V392G (GTG→GGG) | aceF | pyruvate dehydrogenase complex dihydrolipoyllysine‑residue acetyltransferase |
| * | NZ_CP009273 | 2,402,293 | 0 | G | T | 54.5% | 7.2 / 15.5 | 11 | intergenic (+36/‑48) | alaA/yfbR | alanine transaminase AlaA/5'‑deoxynucleotidase |
| * | NZ_CP009273 | 4,102,506 | 0 | T | G | 54.5% | 4.4 / 12.3 | 12 | G88G (GGT→GGG) | yiiR | DUF805 domain‑containing protein |
| * | NZ_CP009273 | 3,214,118 | 0 | C | A | 53.8% | 9.9 / 23.3 | 13 | A422A (GCC→GCA) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 3,729,179 | 0 | T | C | 53.8% | 11.3 / 14.4 | 13 | S281P (TCG→CCG) | xylR | DNA‑binding transcriptional regulator XylR |
| * | NZ_CP009273 | 3,843,623 | 0 | A | C | 53.8% | 9.1 / 11.5 | 13 | V155G (GTG→GGG) | uhpA | transcriptional regulator UhpA |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 53.6% | 2.8 / 30.4 | 28 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 585,393 | 0 | C | G | 53.3% | 9.3 / 20.8 | 15 | A340P (GCC→CCC) | nfrA | bacteriophage adsorption protein NfrA |