mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 143 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 766,353 | 0 | T | G | 61.5% | 5.3 / 12.6 | 13 | intergenic (+286/‑561) | mngB/cydA | mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I |
| * | NZ_CP009273 | 964,142 | 0 | T | G | 59.3% | 14.6 / 22.9 | 27 | G107G (GGT→GGG) | lpxK | tetraacyldisaccharide 4'‑kinase |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 57.7% | 15.4 / 30.8 | 26 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 57.1% | 3.5 / 35.0 | 28 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,500,295 | 0 | A | C | 56.5% | 22.7 / 30.2 | 23 | F15V (TTT→GTT) | ydcO | BenE family transporter YdcO |
| * | NZ_CP009273 | 1,371,397 | 0 | A | C | 56.2% | 33.4 / 43.6 | 32 | K103N (AAA→AAC) | ycjS | Gfo/Idh/MocA family oxidoreductase |
| * | NZ_CP009273 | 1,500,285 | 0 | A | C | 56.0% | 24.2 / 32.0 | 25 | V18G (GTA→GGA) | ydcO | BenE family transporter YdcO |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 55.2% | 12.3 / 30.4 | 29 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 2,888,417 | 0 | A | C | 54.5% | 8.2 / 11.6 | 11 | V241G (GTA→GGA) | ygcQ | electron transfer flavoprotein subunit alpha/FixB family protein |
| * | NZ_CP009273 | 3,029,116 | 0 | A | C | 54.2% | 21.6 / 32.8 | 24 | G175G (GGT→GGG) | prfB | peptide chain release factor 2 |
| * | NZ_CP009273 | 4,558,321 | 0 | T | G | 53.7% | 70.0 / 98.0 | 69 | T6P (ACC→CCC) | mdtM | multidrug efflux MFS transporter MdtM |
| * | NZ_CP009273 | 353,586 | 0 | A | T | 53.3% | 8.4 / 42.0 | 30 | N272K (AAT→AAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 53.3% | 3.7 / 19.6 | 15 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 1,350,458 | 0 | T | G | 52.4% | 15.3 / 26.1 | 21 | T304P (ACC→CCC) | sapA | peptide ABC transporter substrate‑binding protein SapA |
| * | NZ_CP009273 | 3,273,830 | 0 | A | C | 52.4% | 19.5 / 28.1 | 21 | T85T (ACA→ACC) | agaV | PTS N‑acetylgalactosamine transporter subunit IIB |
| * | NZ_CP009273 | 3,781,385 | 0 | T | G | 51.3% | 43.8 / 56.7 | 39 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 50.0% | 15.6 / 16.9 | 26 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 49.0% | 47.8 / 15.6 | 52 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 645,920 | 0 | A | T | 48.6% | 36.7 / 20.2 | 37 | R9R (CGT→CGA) | citE | citrate (pro‑3S)‑lyase subunit beta |
| * | NZ_CP009273 | 937,169 | 0 | T | G | 48.6% | 34.3 / 18.8 | 38 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1203261 | 51 (1.020) | 5 (0.120) | 4/134 | 2.9 | 13.5% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 23 (0.570) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||