mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 34 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,734,269 | 0 | T | G | 60.9% | 6.5 / 24.2 | 23 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate transaminase |
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 58.3% | 15.1 / 29.2 | 24 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| * | NZ_CP009273 | 4,225,954 | 0 | A | G | 57.9% | 6.9 / 19.8 | 19 | S41G (AGT→GGT) | yjbE | exopolysaccharide production protein YjbE |
| * | NZ_CP009273 | 3,140,054 | 0 | C | T | 57.1% | 3.4 / 37.5 | 35 | A15T (GCA→ACA) | yghW | DUF2623 domain‑containing protein |
| * | NZ_CP009273 | 2,319,929 | 0 | T | G | 56.5% | 10.8 / 29.4 | 23 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NZ_CP009273 | 69,900 | 0 | A | C | 55.6% | 31.2 / 42.3 | 36 | V370G (GTG→GGG) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease ThiP |
| * | NZ_CP009273 | 760,175 | 0 | T | G | 55.6% | 21.2 / 24.4 | 18 | G180G (GGT→GGG) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 760,187 | 0 | G | C | 55.6% | 8.1 / 26.6 | 18 | P184P (CCG→CCC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 3,124,782 | 0 | G | C | 55.6% | 5.2 / 10.0 | 9 | pseudogene (986/1065 nt) | yghQ | lipopolysaccharide biosynthesis protein |
| * | NZ_CP009273 | 1,906,036 | 0 | C | T | 54.5% | 1.4 / 11.7 | 11 | S266S (TCG→TCA) | htpX | protease HtpX |
| * | NZ_CP009273 | 3,387,030 | 0 | A | G | 54.5% | 7.5 / 13.0 | 11 | L863P (CTC→CCC) | yhdP | AsmA2 domain‑containing protein YhdP |
| * | NZ_CP009273 | 3,387,034 | 0 | T | G | 54.5% | 8.8 / 12.4 | 11 | T862P (ACG→CCG) | yhdP | AsmA2 domain‑containing protein YhdP |
| * | NZ_CP009273 | 3,387,038 | 0 | A | T | 54.5% | 2.3 / 12.8 | 11 | S860R (AGT→AGA) | yhdP | AsmA2 domain‑containing protein YhdP |
| * | NZ_CP009273 | 360,759 | 0 | T | G | 53.8% | 2.2 / 15.5 | 13 | T329P (ACC→CCC) | lacI | DNA‑binding transcriptional repressor LacI |
| * | NZ_CP009273 | 360,762 | 0 | T | G | 53.8% | 12.3 / 16.7 | 13 | T328P (ACC→CCC) | lacI | DNA‑binding transcriptional repressor LacI |
| * | NZ_CP009273 | 500,096 | 0 | C | T | 53.8% | 4.2 / 11.2 | 13 | K19K (AAG→AAA) | fsr | fosmidomycin MFS transporter |
| * | NZ_CP009273 | 899,438 | 0 | A | C | 53.8% | 10.8 / 13.6 | 13 | G162G (GGT→GGG) | ybjP | lipoprotein |
| * | NZ_CP009273 | 2,955,854 | 0 | T | G | 53.8% | 20.0 / 30.3 | 26 | S90S (TCA→TCC) | ppdC | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein |
| * | NZ_CP009273 | 1,548,257 | 0 | T | G | 53.3% | 13.0 / 15.3 | 15 | Y557S (TAC→TCC) | maeA | malate dehydrogenase |
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 53.3% | 9.7 / 18.0 | 15 | T275P (ACC→CCC) | htpX | protease HtpX |