mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,791 | G→A | intergenic (+160/‑32) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,910 | T→G | W30G (TGG→GGG) | folA → | type 3 dihydrofolate reductase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,631,618 | Δ1 bp | coding (617/1500 nt) | pitA → | inorganic phosphate transporter PitA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357567 | 587 | 4 [0] | [0] 3 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 578962 | 579047 | 86 | 2 [1] | [1] 2 | BW25113_RS26085/appY | tail fiber assembly protein/DNA‑binding transcriptional activator AppY |
| * | * | ÷ | NZ_CP009273 | 579534 | 579626 | 93 | 2 [1] | [1] 2 | appY | DNA‑binding transcriptional activator AppY |
| * | * | ÷ | NZ_CP009273 | 748380 | 748417 | 38 | 2 [1] | [0] 4 | ybgD/gltA | fimbrial protein/citrate synthase |
| * | * | ÷ | NZ_CP009273 | 1098967 | 1098984 | 18 | 2 [1] | [1] 2 | csgD/csgB | biofilm master transcriptional regulator CsgD/curli minor subunit CsgB |
| * | * | ÷ | NZ_CP009273 | 1206656 | 1206676 | 21 | 3 [1] | [1] 3 | mcrA/BW25113_RS23640 | 5‑methylcytosine‑specific endonuclease McrA/isocitrate/isopropylmalate family dehydrogenase |
| * | * | ÷ | NZ_CP009273 | 1207571 | 1207655 | 85 | 2 [1] | [1] 2 | iraM/BW25113_RS25985 | anti‑adapter protein IraM/protein YmgK |
| * | * | ÷ | NZ_CP009273 | 1211111 | 1211133 | 23 | 2 [1] | [0] 2 | bluF/ycgZ | blue light‑responsive regulator BluF/regulatory protein YcgZ |
| * | * | ÷ | NZ_CP009273 | 1362258 | 1362268 | 11 | 2 [1] | [0] 2 | pspF/pspA | phage shock protein operon transcriptional activator/phage shock protein PspA |
| * | * | ÷ | NZ_CP009273 | 1459463 | 1459480 | 18 | 2 [1] | [1] 2 | BW25113_RS25580 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 2768281 | 2768282 | 2 | 4 [1] | [0] 2 | BW25113_RS13770 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 2984559 | 2984593 | 35 | 4 [1] | [1] 2 | BW25113_RS14825/ygeG | hypothetical protein/tetratricopeptide repeat protein |
| * | * | ÷ | NZ_CP009273 | 3354469 | 3354482 | 14 | 3 [1] | [1] 2 | gltD/gltF | glutamate synthase subunit GltD/DUF1120 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 4466835 | 4466874 | 40 | 2 [1] | [1] 2 | BW25113_RS22080 | hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 74 (2.710) | 33/168 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 4532499 = | 3 (0.110) | 13 (0.530) | 7/150 | 1.1 | 56.9% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 17 (0.700) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||