mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 45 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,141,214 | 0 | T | G | 66.7% | 5.0 / 11.4 | 15 | G20G (GGT→GGG) | yegD | molecular chaperone |
| * | NZ_CP009273 | 4,101,671 | 0 | G | T | 62.5% | 4.8 / 21.3 | 16 | R158S (CGT→AGT) | yiiQ | YiiQ family protein |
| * | NZ_CP009273 | 3,029,116 | 0 | A | C | 61.5% | 3.3 / 11.1 | 13 | G175G (GGT→GGG) | prfB | peptide chain release factor 2 |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 58.8% | ‑3.6 / 15.5 | 17 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 642,221 | 0 | G | T | 58.3% | 3.9 / 17.3 | 12 | Q249K (CAA→AAA) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| * | NZ_CP009273 | 108,785 | 0 | A | C | 57.1% | 14.5 / 20.8 | 21 | V101G (GTA→GGA) | zapD | cell division protein ZapD |
| * | NZ_CP009273 | 4,101,675 | 0 | G | T | 56.2% | 1.4 / 21.6 | 16 | N156K (AAC→AAA) | yiiQ | YiiQ family protein |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 56.2% | 6.7 / 34.0 | 32 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,401,190 | 0 | C | G | 55.0% | 10.2 / 23.7 | 20 | G75G (GGC→GGG) | panF | sodium/pantothenate symporter |
| * | NZ_CP009273 | 3,436,636 | 0 | A | C | 55.0% | 7.9 / 27.3 | 20 | V274G (GTA→GGA) | secY | preprotein translocase subunit SecY |
| * | NZ_CP009273 | 2,380,342 | 0 | C | A | 54.5% | 4.9 / 13.9 | 12 | intergenic (+32/‑71) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 4,321,617 | 0 | C | T | 54.5% | 4.9 / 11.1 | 11 | I433I (ATC→ATT) | proP | glycine betaine/L‑proline transporter ProP |
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 54.2% | 12.6 / 29.6 | 24 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 3,703,332 | 0 | A | C | 53.8% | 9.8 / 15.5 | 14 | G168G (GGT→GGG) | eptB | kdo(2)‑lipid A phosphoethanolamine 7''‑transferase |
| * | NZ_CP009273 | 2,147,725 | 0 | A | C | 53.3% | 19.0 / 20.5 | 15 | T77P (ACC→CCC) | mdtA | multidrug efflux RND transporter subunit MdtA |
| * | NZ_CP009273 | 807,177 | 0 | T | G | 52.6% | 18.9 / 24.4 | 19 | V67G (GTG→GGG) | bioC | malonyl‑ACP O‑methyltransferase BioC |
| * | NZ_CP009273 | 1,570,326 | 0 | T | C | 52.6% | 18.4 / 27.8 | 19 | G517G (GGA→GGG) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 3,199,794 | 0 | C | T | 52.6% | 8.2 / 25.6 | 19 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 3,726,640 | 0 | T | A | 52.4% | 9.2 / 28.0 | 22 | N360K (AAT→AAA) | xylG | D‑xylose ABC transporter ATP‑binding protein |
| * | NZ_CP009273 | 3,012,922 | 0 | T | G | 52.2% | 22.9 / 33.1 | 23 | S135A (TCG→GCG) | ssnA | putative aminohydrolase SsnA |