mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 38 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 69.0% | 8.6 / 29.5 | 42 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 64.3% | 1.1 / 33.8 | 42 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,431,963 | 0 | A | G | 62.1% | 5.7 / 27.3 | 29 | S11P (TCC→CCC) | msrA | peptide‑methionine (S)‑S‑oxide reductase MsrA |
| * | NZ_CP009273 | 2,621,984 | 0 | A | C | 60.0% | 9.4 / 15.4 | 15 | V105G (GTC→GGC) | pdeF | cyclic‑guanylate‑specific phosphodiesterase PdeF |
| * | NZ_CP009273 | 3,020,300 | 0 | A | C | 60.0% | 5.1 / 13.1 | 15 | E391D (GAA→GAC) | guaD | guanine deaminase |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 58.8% | 3.6 / 14.9 | 18 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 760,181 | 0 | G | C | 58.8% | 3.0 / 18.5 | 17 | P182P (CCG→CCC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 3,090,826 | 0 | T | G | 58.8% | 5.1 / 10.5 | 17 | G67G (GGT→GGG) | hemW | radical SAM family heme chaperone HemW |
| * | NZ_CP009273 | 3,029,116 | 0 | A | C | 57.1% | 4.1 / 12.4 | 14 | G175G (GGT→GGG) | prfB | peptide chain release factor 2 |
| * | NZ_CP009273 | 4,248,902 | 0 | T | G | 57.1% | 8.9 / 15.4 | 14 | G393G (GGT→GGG) | dinF | MATE family efflux transporter DinF |
| * | NZ_CP009273 | 2,254,480 | 0 | A | C | 56.2% | 7.9 / 16.4 | 16 | V137G (GTG→GGG) | fruA | PTS fructose transporter subunit IIBC |
| * | NZ_CP009273 | 2,955,854 | 0 | T | G | 56.2% | 8.3 / 13.9 | 16 | S90S (TCA→TCC) | ppdC | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein |
| * | NZ_CP009273 | 3,276,090 | 0 | T | G | 56.2% | 9.8 / 15.6 | 16 | G252G (GGT→GGG) | agaS | AgaS family sugar isomerase |
| * | NZ_CP009273 | 883,470 | 0 | T | G | 55.6% | 11.0 / 19.8 | 18 | intergenic (+55/+120) | rcdA/ybjL | DNA‑binding transcriptional regulator RcdA/aspartate:alanine antiporter |
| * | NZ_CP009273 | 4,248,938 | 0 | T | G | 54.5% | 3.4 / 10.5 | 11 | G405G (GGT→GGG) | dinF | MATE family efflux transporter DinF |
| * | NZ_CP009273 | 4,254,020 | 0 | A | G | 54.5% | 5.9 / 10.8 | 11 | I47T (ATC→ACC) | qorA | quinone oxidoreductase |
| * | NZ_CP009273 | 2,667,520 | 0 | A | C | 53.8% | 6.7 / 13.0 | 13 | G176G (GGT→GGG) | yphB | aldose 1‑epimerase |
| * | NZ_CP009273 | 842,900 | 0 | G | T | 53.3% | 17.4 / 26.1 | 15 | I187I (ATC→ATA) | glnH | glutamine ABC transporter substrate‑binding protein GlnH |
| * | NZ_CP009273 | 3,401,179 | 0 | T | A | 53.3% | 10.9 / 20.7 | 15 | Y72N (TAC→AAC) | panF | sodium/pantothenate symporter |
| * | NZ_CP009273 | 2,334,224 | 0 | T | A | 52.9% | 1.9 / 19.2 | 17 | D1142V (GAT→GTT) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |