mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 52 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,622,316 | 0 | T | G | 64.3% | 4.8 / 11.8 | 14 | G181G (GGT→GGG) | ydfG | bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/3‑hydroxypropionate dehydrogenase YdfG |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 63.2% | ‑5.5 / 12.0 | 19 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 3,177,828 | 1 | . | A | 63.0% | 67.4 / 31.1 | 27 | intergenic (‑3/‑371) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| * | NZ_CP009273 | 3,273,830 | 0 | A | C | 61.1% | 7.5 / 16.8 | 18 | T85T (ACA→ACC) | agaV | PTS N‑acetylgalactosamine transporter subunit IIB |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 60.0% | 2.4 / 12.0 | 15 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 1,560,495 | 0 | C | T | 60.0% | ‑2.1 / 10.7 | 15 | T301T (ACG→ACA) | dosC | diguanylate cyclase DosC |
| * | NZ_CP009273 | 1,571,380 | 0 | A | C | 59.1% | 12.8 / 23.2 | 22 | V166G (GTA→GGA) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 3,738,402 | 0 | A | C | 58.8% | 1.0 / 10.0 | 18 | D80A (GAC→GCC) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| * | NZ_CP009273 | 518,791 | 0 | T | G | 58.3% | 5.3 / 11.6 | 12 | G25G (GGT→GGG) | rhsD | rhs element protein RhsD |
| * | NZ_CP009273 | 1,622,307 | 0 | T | G | 57.1% | 10.9 / 13.4 | 14 | G178G (GGT→GGG) | ydfG | bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/3‑hydroxypropionate dehydrogenase YdfG |
| * | NZ_CP009273 | 3,477,107 | 0 | A | T | 57.1% | 6.0 / 16.6 | 14 | M183L (ATG→TTG) | yheT | hydrolase |
| * | NZ_CP009273 | 349,993 | 0 | T | G | 56.2% | 7.5 / 12.1 | 16 | V526G (GTT→GGT) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 1,026,441 | 0 | A | C | 56.2% | 10.5 / 12.6 | 16 | V145G (GTG→GGG) | yccA | FtsH protease modulator YccA |
| * | NZ_CP009273 | 2,089,567 | 0 | T | G | 56.2% | 9.1 / 14.6 | 16 | G81G (GGT→GGG) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 3,524,799 | 0 | A | C | 56.0% | 17.2 / 29.7 | 25 | Y334D (TAT→GAT) | yhgE | DUF4153 domain‑containing protein |
| * | NZ_CP009273 | 2,778,686 | 0 | T | G | 55.6% | 14.5 / 20.3 | 18 | intergenic (‑316/+435) | BW25113_RS25705/BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
| * | NZ_CP009273 | 4,086,494 | 0 | T | G | 55.6% | 11.1 / 20.4 | 18 | Y102S (TAC→TCC) | rhaM | L‑rhamnose mutarotase |
| * | NZ_CP009273 | 3,098,651 | 0 | A | C | 55.0% | 19.5 / 24.5 | 20 | N287T (AAC→ACC) | mltC | membrane‑bound lytic murein transglycosylase MltC |
| * | NZ_CP009273 | 3,738,361 | 0 | T | G | 55.0% | 1.9 / 12.3 | 20 | G66G (GGT→GGG) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| * | NZ_CP009273 | 1,854,924 | 0 | A | C | 54.5% | 7.4 / 12.1 | 11 | G222G (GGT→GGG) | ydjL | zinc‑binding dehydrogenase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3948788 | 29 (1.380) | 3 (0.140) | 3/172 | 1.9 | 9.0% | coding (98/1545 nt) | ilvA | threonine ammonia‑lyase, biosynthetic |
| ? | NZ_CP009273 | 3948792 = | 32 (1.520) | coding (102/1545 nt) | ilvA | threonine ammonia‑lyase, biosynthetic | |||||