mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 29.4% | 31.8 / 15.3 | 34 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 50 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 182 (1.140) | 21 (0.140) | 20/472 | 7.5 | 11.5% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 153 (1.030) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 1207790 = | 193 (1.210) | 20 (0.130) | 18/472 | 8.1 | 10.7% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 154 (1.030) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 2442529 | 114 (0.720) | 4 (0.040) +85 bp |
4/334 | 11.7 | 5.0% | coding (766/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme |
| ? | NC_000913 | 2442615 = | 117 (0.730) | coding (852/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | NC_000913 | 1096961 = | 146 (0.920) | 18 (0.170) | 4/344 | 11.9 | 19.4% | intergenic (+132/+604) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 50 (0.460) | intergenic (+674/+62) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser | |||||
| * | ? | NC_000913 | 2765420 = | 130 (0.820) | 3 (0.020) | 3/416 | 14.3 | 2.8% | intergenic (‑267/+93) | abpA/yfjM | CP4‑57 prophage; anti‑bacteriophage protein/CP4‑57 prophage; protein YfjM |
| ? | NC_000913 | = 2765411 | 105 (0.800) | intergenic (‑258/+102) | abpA/yfjM | CP4‑57 prophage; anti‑bacteriophage protein/CP4‑57 prophage; protein YfjM | |||||
| * | ? | NC_000913 | = 200412 | 136 (0.850) | 5 (0.030) | 5/490 | 14.3 | 3.5% | intergenic (+52/‑70) | bamA/skp | outer membrane protein assembly factor BamA/periplasmic chaperone Skp |
| ? | NC_000913 | = 200419 | 142 (0.920) | intergenic (+59/‑63) | bamA/skp | outer membrane protein assembly factor BamA/periplasmic chaperone Skp | |||||
| * | ? | NC_000913 | = 1209618 | 164 (1.030) | 4 (0.030) | 4/474 | 14.7 | 2.2% | pseudogene (38/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment |
| ? | NC_000913 | 2471897 = | 199 (1.330) | pseudogene (166/519 nt) | yfdL | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YfdL | |||||
| * | ? | NC_000913 | = 4502104 | 194 (1.220) | 4 (0.030) | 4/482 | 14.8 | 2.2% | noncoding (1412/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | = 4502108 | 175 (1.150) | noncoding (1408/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | = 2713829 | 179 (1.120) | 4 (0.030) | 4/482 | 14.8 | 2.5% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB |
| ? | NC_000913 | = 2713908 | 137 (0.900) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB | |||||
| * | ? | NC_000913 | 4037216 = | 108 (0.680) | 5 (0.030) | 4/486 | 14.9 | 4.5% | noncoding (76/77 nt) | ileT | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 106 (0.690) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||