mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 21.3% | 88.5 / 12.6 | 49 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 315401 = | NA (NA) | 5 (0.060) | 4/480 | 8.6 | NA | noncoding (173/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315627 = | NA (NA) | noncoding (399/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 2045253 | 88 (0.960) | 4 (0.050) | 4/482 | 8.7 | 4.8% | coding (316/7077 nt) | yeeJ | inverse autotransporter adhesin |
| ? | NC_000913 | = 2045342 | 75 (0.860) | coding (405/7077 nt) | yeeJ | inverse autotransporter adhesin | |||||
| * | ? | NC_000913 | 1297359 = | 97 (1.060) | 4 (0.050) | 4/484 | 8.7 | 4.2% | coding (763/2676 nt) | adhE | aldehyde‑alcohol dehydrogenase |
| ? | NC_000913 | = 1297355 | 90 (1.030) | coding (767/2676 nt) | adhE | aldehyde‑alcohol dehydrogenase | |||||
| * | ? | NC_000913 | = 1102930 | 108 (1.180) | 6 (0.070) | 4/488 | 8.7 | 5.2% | coding (267/651 nt) | csgD | DNA‑binding transcriptional dual regulator CsgD |
| ? | NC_000913 | = 1103037 | 116 (1.320) | coding (160/651 nt) | csgD | DNA‑binding transcriptional dual regulator CsgD | |||||
| * | ? | NC_000913 | = 969817 | 98 (1.070) | 4 (0.050) | 4/486 | 8.7 | 3.9% | coding (429/1233 nt) | ycaQ | winged helix DNA‑binding domain‑containing protein YcaQ |
| ? | NC_000913 | = 970079 | 102 (1.160) | coding (691/1233 nt) | ycaQ | winged helix DNA‑binding domain‑containing protein YcaQ | |||||
| * | ? | NC_000913 | = 4609854 | 94 (1.030) | 4 (0.040) | 4/496 | 8.8 | 4.2% | coding (441/1590 nt) | prfC | peptide chain release factor RF3 |
| ? | NC_000913 | = 4610163 | 92 (1.030) | coding (750/1590 nt) | prfC | peptide chain release factor RF3 | |||||
| * | ? | NC_000913 | = 3748635 | 65 (0.710) | 4 (0.050) | 4/492 | 8.8 | 4.8% | coding (59/663 nt) | sgbH | 3‑keto‑L‑gulonate‑6‑phosphate decarboxylase SgbH |
| ? | NC_000913 | = 3748885 | 97 (1.090) | coding (309/663 nt) | sgbH | 3‑keto‑L‑gulonate‑6‑phosphate decarboxylase SgbH | |||||
| * | ? | NC_000913 | 2655876 = | 119 (1.300) | 5 (0.060) | 4/498 | 8.8 | 3.9% | coding (483/1284 nt) | pepB | aminopeptidase B |
| ? | NC_000913 | 2656032 = | 127 (1.410) | coding (327/1284 nt) | pepB | aminopeptidase B | |||||
| * | ? | NC_000913 | = 2522127 | 98 (1.070) | 4 (0.050) | 4/492 | 8.8 | 4.3% | coding (351/885 nt) | xapR | DNA‑binding transcriptional activator XapR |
| ? | NC_000913 | = 2522254 | 83 (0.930) | coding (224/885 nt) | xapR | DNA‑binding transcriptional activator XapR | |||||
| * | ? | NC_000913 | = 2878034 | 102 (1.120) | 3 (0.040) | 3/448 | 8.9 | 3.1% | intergenic (+416/+535) | iap/cas2 | alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2 |
| ? | NC_000913 | 2878096 = | 100 (1.240) | intergenic (+478/+473) | iap/cas2 | alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2 | |||||