mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 13 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4596915 = | 107 (1.180) | 4 (0.050) | 4/248 | NT | 3.8% | coding (926/1023 nt) | lgoD | L‑galactonate oxidoreductase; L‑gulonate oxidoreductase |
| ? | NC_000913 | 4596978 = | 103 (1.190) | coding (989/1023 nt) | lgoD | L‑galactonate oxidoreductase; L‑gulonate oxidoreductase | |||||
| * | ? | NC_000913 | = 4459872 | 104 (1.140) | 5 (0.060) | 5/242 | NT | 4.8% | intergenic (+17/+28) | cybC/nrdG | pseudogene, truncated cytochrome b562; cytochrome b(562)/anaerobic ribonucleotide reductase activating protein |
| ? | NC_000913 | = 4459886 | 103 (1.220) | intergenic (+31/+14) | cybC/nrdG | pseudogene, truncated cytochrome b562; cytochrome b(562)/anaerobic ribonucleotide reductase activating protein | |||||
| * | ? | NC_000913 | = 4287069 | 97 (1.070) | 4 (0.050) | 4/252 | NT | 3.9% | coding (303/1959 nt) | acs | acetyl‑CoA synthetase |
| ? | NC_000913 | = 4287100 | 104 (1.180) | coding (272/1959 nt) | acs | acetyl‑CoA synthetase | |||||
| * | ? | NC_000913 | 4285055 = | 77 (0.850) | 3 (0.030) | 3/256 | NT | 3.7% | coding (159/315 nt) | yjcH | DUF485 family inner membrane protein |
| ? | NC_000913 | 4285077 = | 79 (0.880) | coding (137/315 nt) | yjcH | DUF485 family inner membrane protein | |||||
| * | ? | NC_000913 | 3334936 = | 137 (1.510) | 4 (0.050) | 4/250 | NT | 2.9% | coding (28/279 nt) | sfsB | malPQ operon transcriptional activator |
| ? | NC_000913 | 3334956 = | 133 (1.520) | coding (48/279 nt) | sfsB | malPQ operon transcriptional activator | |||||
| * | ? | NC_000913 | = 3083839 | 112 (1.230) | 4 (0.050) | 4/242 | NT | 3.4% | intergenic (‑42/+96) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding |
| ? | NC_000913 | = 3083858 | 120 (1.420) | intergenic (‑61/+77) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding | |||||
| * | ? | NC_000913 | = 2645484 | 62 (0.680) | 3 (0.030) | 3/252 | NT | 4.5% | coding (1842/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein |
| ? | NC_000913 | = 2645503 | 68 (0.770) | coding (1823/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein | |||||
| * | ? | NC_000913 | = 2574063 | 73 (0.800) | 3 (0.030) | 3/258 | NT | 3.8% | coding (243/804 nt) | eutT | cobalamin adenosyltransferase involved in ethanolamine utilization |
| ? | NC_000913 | = 2574080 | 80 (0.890) | coding (226/804 nt) | eutT | cobalamin adenosyltransferase involved in ethanolamine utilization | |||||
| * | ? | NC_000913 | 2325633 = | 85 (0.930) | 3 (0.040) | 3/244 | NT | 3.6% | coding (878/1323 nt) | atoE | short chain fatty acid transporter |
| ? | NC_000913 | 2325660 = | 83 (0.970) | coding (905/1323 nt) | atoE | short chain fatty acid transporter | |||||
| * | ? | NC_000913 | = 1978062 | 76 (0.840) | 3 (0.030) | 3/260 | NT | 3.8% | coding (136/351 nt) | flhD | flagellar class II regulon transcriptional activator, with FlhC |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||