mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.8% | 76.3 / 51.5 | 61 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,519,222 | 0 | T | G | 20.8% | 45.6 / 11.6 | 24 | intergenic (+17/+35) | yfeD/gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| * | NC_000913 | 1,584,863 | 0 | T | A | 20.0% | 87.6 / 14.6 | 40 | K542* (AAA→TAA) | ydeP | putative oxidoreductase |
| * | NC_000913 | 1,584,864 | 0 | T | A | 20.0% | 84.5 / 17.2 | 40 | L541F (TTA→TTT) | ydeP | putative oxidoreductase |
| * | NC_000913 | 3,122,429 | 0 | A | C | 20.0% | 83.1 / 16.5 | 40 | D459E (GAT→GAG) | glcB | malate synthase G |
| Marginal new junction evidence (lowest skew 10 of 71 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3239599 = | 44 (1.180) | 6 (0.230) +37 bp |
6/176 | 2.8 | 18.0% | intergenic (+54/‑345) | alx/sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| ? | NC_000913 | 3504854 = | 34 (0.910) | intergenic (+71/+81) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
| * | ? | NC_000913 | = 232564 | 54 (1.450) | 8 (0.240) | 8/226 | 2.9 | 13.8% | intergenic (+15/+33) | yafE/mltD | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D |
| ? | NC_000913 | = 232571 | 51 (1.510) | intergenic (+22/+26) | yafE/mltD | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D | |||||
| * | ? | NC_000913 | 4621634 = | 46 (1.230) | 8 (0.230) | 8/230 | 3.0 | 16.6% | intergenic (+32/‑135) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase |
| ? | NC_000913 | 4621662 = | 38 (1.110) | intergenic (+60/‑107) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase | |||||
| * | ? | NC_000913 | 1207790 = | 14 (0.370) | 6 (0.180) | 6/218 | 3.5 | 24.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 24 (0.740) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4555195 | 45 (1.200) | 6 (0.170) | 6/236 | 3.7 | 13.3% | coding (620/774 nt) | uxuR | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| ? | NC_000913 | = 4555217 | 36 (1.020) | coding (642/774 nt) | uxuR | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor | |||||
| * | ? | NC_000913 | 3998038 = | 27 (0.720) | 6 (0.170) | 6/236 | 3.7 | 20.9% | coding (56/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II |
| ? | NC_000913 | 3998077 = | 20 (0.570) | coding (95/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II | |||||
| * | ? | NC_000913 | = 4219847 | 28 (0.750) | 5 (0.150) | 5/226 | 4.0 | 17.2% | coding (1252/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase |
| ? | NC_000913 | = 4219854 | 23 (0.680) | coding (1259/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase | |||||
| * | ? | NC_000913 | 1972772 = | 29 (0.780) | 5 (0.140) | 5/232 | 4.0 | 19.7% | intergenic (‑81/+64) | tar/cheW | methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein |
| ? | NC_000913 | 1972820 = | 14 (0.400) | intergenic (‑129/+16) | tar/cheW | methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein | |||||
| * | ? | NC_000913 | = 4215777 | 39 (1.040) | 5 (0.140) | 5/238 | 4.1 | 12.3% | coding (300/1602 nt) | aceB | malate synthase A |
| ? | NC_000913 | = 4215792 | 34 (0.960) | coding (315/1602 nt) | aceB | malate synthase A | |||||
| * | ? | NC_000913 | = 3943635 | NA (NA) | 7 (0.200) | 5/236 | 4.1 | 31.7% | intergenic (+125/‑69) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037446 | 16 (0.430) | intergenic (+111/‑73) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||