breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT32.8% 76.3 / 51.5 61intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009132,519,2220TG20.8% 45.6 / 11.6 24intergenic (+17/+35)yfeD/gltXDUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase
*NC_0009131,584,8630TA20.0% 87.6 / 14.6 40K542* (AAA→TAA) ydePputative oxidoreductase
*NC_0009131,584,8640TA20.0% 84.5 / 17.2 40L541F (TTA→TTTydePputative oxidoreductase
*NC_0009133,122,4290AC20.0% 83.1 / 16.5 40D459E (GAT→GAGglcBmalate synthase G

Marginal new junction evidence (lowest skew 10 of 71 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3239599 =44 (1.180)6 (0.230)
+37 bp
6/176 2.8 18.0% intergenic (+54/‑345) alx/sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
?NC_000913 3504854 = 34 (0.910)intergenic (+71/+81) frlR/yhfS putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein
* ? NC_000913 = 23256454 (1.450)8 (0.240) 8/226 2.9 13.8% intergenic (+15/+33) yafE/mltD putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D
?NC_000913 = 232571 51 (1.510)intergenic (+22/+26) yafE/mltD putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D
* ? NC_000913 4621634 =46 (1.230)8 (0.230) 8/230 3.0 16.6% intergenic (+32/‑135) deoD/yjjJ purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase
?NC_000913 4621662 = 38 (1.110)intergenic (+60/‑107) deoD/yjjJ purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase
* ? NC_000913 1207790 =14 (0.370)6 (0.180) 6/218 3.5 24.9% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 24 (0.740)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 455519545 (1.200)6 (0.170) 6/236 3.7 13.3% coding (620/774 nt) uxuR fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor
?NC_000913 = 4555217 36 (1.020)coding (642/774 nt) uxuR fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor
* ? NC_000913 3998038 =27 (0.720)6 (0.170) 6/236 3.7 20.9% coding (56/2163 nt) uvrD DNA‑dependent ATPase I and helicase II
?NC_000913 3998077 = 20 (0.570)coding (95/2163 nt) uvrD DNA‑dependent ATPase I and helicase II
* ? NC_000913 = 421984728 (0.750)5 (0.150) 5/226 4.0 17.2% coding (1252/1737 nt) aceK isocitrate dehydrogenase kinase/phosphatase
?NC_000913 = 4219854 23 (0.680)coding (1259/1737 nt) aceK isocitrate dehydrogenase kinase/phosphatase
* ? NC_000913 1972772 =29 (0.780)5 (0.140) 5/232 4.0 19.7% intergenic (‑81/+64) tar/cheW methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein
?NC_000913 1972820 = 14 (0.400)intergenic (‑129/+16) tar/cheW methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein
* ? NC_000913 = 421577739 (1.040)5 (0.140) 5/238 4.1 12.3% coding (300/1602 nt) aceB malate synthase A
?NC_000913 = 4215792 34 (0.960)coding (315/1602 nt) aceB malate synthase A
* ? NC_000913 = 3943635NA (NA)7 (0.200) 5/236 4.1 31.7% intergenic (+125/‑69) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
?NC_000913 = 4037446 16 (0.430)intergenic (+111/‑73) alaT/rrlA tRNA‑Ala/23S ribosomal RNA of rrnA operon