mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.9% | 185.7 / 121.6 | 164 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,781,152 | 0 | A | G | 22.4% | 157.3 / 17.4 | 85 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 2,751,947 | 0 | A | C | 21.5% | 270.3 / 11.3 | 121 | E51D (GAA→GAC) | recN | recombination and repair protein |
| Marginal new junction evidence (lowest skew 10 of 367 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 65 (0.550) | 48 (0.450) | 37/260 | 4.4 | 45.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 56 (0.530) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1097463 | 38 (0.320) | 26 (0.230) | 20/276 | 9.9 | 40.0% | intergenic (+634/+102) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097467 | 42 (0.370) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097113 | 84 (0.710) | 26 (0.230) | 20/276 | 9.9 | 32.8% | intergenic (+284/+452) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097455 | 27 (0.240) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097101 | 76 (0.640) | 27 (0.240) | 20/276 | 9.9 | 32.2% | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097467 | 42 (0.370) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097101 | 76 (0.640) | 27 (0.240) | 20/276 | 9.9 | 26.9% | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097105 | 75 (0.670) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097294 | 26 (0.220) | 25 (0.220) | 19/276 | 10.3 | 49.2% | intergenic (+465/+271) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097455 | 27 (0.240) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097101 | 76 (0.640) | 26 (0.230) | 19/276 | 10.3 | 35.9% | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097286 | 21 (0.190) | intergenic (+457/+279) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097282 | 21 (0.180) | 21 (0.190) | 18/276 | 10.7 | 40.5% | intergenic (+453/+283) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097467 | 42 (0.370) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097113 | 84 (0.710) | 21 (0.190) | 18/276 | 10.7 | 30.1% | intergenic (+284/+452) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097274 | 18 (0.160) | intergenic (+445/+291) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097282 | 21 (0.180) | 20 (0.180) | 17/276 | 11.1 | 49.5% | intergenic (+453/+283) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097286 | 21 (0.190) | intergenic (+457/+279) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||