mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 857,576 | 0 | T | C | 20.4% | 86.4 / 18.2 | 44 | intergenic (+21/+220) | ybiT/ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| * | NC_000913 | 857,578 | 0 | C | G | 20.4% | 100.4 / 23.2 | 44 | intergenic (+23/+218) | ybiT/ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| * | NC_000913 | 857,580 | 0 | G | A | 20.4% | 88.6 / 17.5 | 44 | intergenic (+25/+216) | ybiT/ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.4% | 106.1 / 20.3 | 49 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 77 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 52 (1.100) | 9 (0.200) | 8/250 | 4.1 | 15.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 49 (1.110) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 2700550 = | 56 (1.190) | 7 (0.170) | 7/230 | 4.1 | 12.6% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913 | 2700601 = | 49 (1.210) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913 | = 2019164 | 39 (0.830) | 9 (0.200) | 8/254 | 4.2 | 20.0% | coding (779/1128 nt) | fliK | flagellar hook‑length control protein |
| ? | NC_000913 | = 2019170 | 35 (0.780) | coding (785/1128 nt) | fliK | flagellar hook‑length control protein | |||||
| * | ? | NC_000913 | = 4271029 | 49 (1.040) | 7 (0.160) | 7/250 | 4.5 | 13.0% | intergenic (+15/+20) | yjbR/uvrA | DUF419 family protein/ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| ? | NC_000913 | = 4271034 | 48 (1.090) | intergenic (+20/+15) | yjbR/uvrA | DUF419 family protein/ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | |||||
| * | ? | NC_000913 | 3512564 = | 49 (1.040) | 4 (0.110) +35 bp |
4/198 | 4.8 | 10.0% | noncoding (54/90 nt) | REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3676121 = | NA (NA) | noncoding (1/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 1231441 = | 41 (0.870) | 7 (0.160) | 6/254 | 4.9 | 15.1% | coding (256/1269 nt) | umuC | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity |
| ? | NC_000913 | 1231473 = | 40 (0.890) | coding (288/1269 nt) | umuC | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity | |||||
| * | ? | NC_000913 | = 3684503 | 86 (1.820) | 6 (0.130) | 6/258 | 5.0 | 7.1% | coding (1116/1989 nt) | yhjK | cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913 | = 3684510 | 75 (1.650) | coding (1109/1989 nt) | yhjK | cyclic‑di‑GMP phosphodiesterase | |||||
| * | ? | NC_000913 | 382282 = | NA (NA) | 6 (0.130) | 6/256 | 5.0 | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 4024476 = | 42 (0.890) | 5 (0.110) | 5/254 | 5.3 | 11.3% | coding (346/489 nt) | rfaH | transcription antitermination protein |
| ? | NC_000913 | 4024495 = | 39 (0.870) | coding (327/489 nt) | rfaH | transcription antitermination protein | |||||
| * | ? | NC_000913 | = 2393130 | NA (NA) | 5 (0.110) | 5/254 | 5.3 | NA | intergenic (‑89/+75) | nuoM/nuoL | NADH:ubiquinone oxidoreductase, membrane subunit M/NADH:ubiquinone oxidoreductase, membrane subunit L |
| ? | NC_000913 | = 2393162 | NA (NA) | noncoding (32/36 nt) | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||