mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,028,158 | 0 | G | C | 25.0% | 52.6 / 16.3 | 28 | intergenic (‑141/+30) | yedQ/yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| * | NC_000913 | 2,028,159 | 0 | T | A | 25.0% | 40.9 / 14.8 | 28 | intergenic (‑142/+29) | yedQ/yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| * | NC_000913 | 2,028,160 | 0 | G | C | 25.0% | 50.7 / 17.5 | 28 | intergenic (‑143/+28) | yedQ/yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.5% | 58.1 / 14.9 | 34 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 45 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4233518 = | 41 (1.040) | 6 (0.170) | 6/238 | 3.4 | 14.8% | intergenic (‑285/‑240) | lysC/pgi | lysine‑sensitive aspartokinase 3/glucosephosphate isomerase |
| ? | NC_000913 | 4233534 = | 33 (0.950) | intergenic (‑301/‑224) | lysC/pgi | lysine‑sensitive aspartokinase 3/glucosephosphate isomerase | |||||
| * | ? | NC_000913 | = 4390730 | 49 (1.240) | 6 (0.160) | 6/256 | 3.6 | 11.5% | coding (780/1053 nt) | rsgA | ribosome small subunit‑dependent GTPase A |
| ? | NC_000913 | = 4390752 | 46 (1.230) | coding (758/1053 nt) | rsgA | ribosome small subunit‑dependent GTPase A | |||||
| * | ? | NC_000913 | 2276138 = | 41 (1.040) | 6 (0.160) | 6/254 | 3.6 | 13.4% | coding (866/1026 nt) | yejE | microcin C ABC transporter permease |
| ? | NC_000913 | 2276159 = | 39 (1.050) | coding (887/1026 nt) | yejE | microcin C ABC transporter permease | |||||
| * | ? | NC_000913 | 3149848 = | 22 (0.560) | 6 (0.160) | 6/260 | 3.7 | 22.6% | coding (187/885 nt) | yghA | putative oxidoreductase |
| ? | NC_000913 | 3149874 = | 20 (0.530) | coding (213/885 nt) | yghA | putative oxidoreductase | |||||
| * | ? | NC_000913 | 2204447 = | 37 (0.940) | 6 (0.170) | 5/248 | 3.9 | 13.5% | intergenic (+158/‑149) | yehK/yehL | uncharacterized protein/putative hexameric AAA+ MoxR family ATPase |
| ? | NC_000913 | 2204492 = | 43 (1.190) | intergenic (+203/‑104) | yehK/yehL | uncharacterized protein/putative hexameric AAA+ MoxR family ATPase | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 8 (0.220) | 5/252 | 3.9 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 4128795 = | 46 (1.160) | 5 (0.130) | 5/258 | 4.0 | 10.0% | coding (124/1161 nt) | metB | cystathionine gamma‑synthase, PLP‑dependent |
| ? | NC_000913 | 4128835 = | 46 (1.220) | coding (164/1161 nt) | metB | cystathionine gamma‑synthase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 1628277 | 37 (0.940) | 5 (0.130) | 5/256 | 4.0 | 11.9% | intergenic (+14/‑75) | ydfG/rspR | NADP‑dependent 3‑hydroxy acid dehydrogenase; malonic semialdehyde reductase/transcriptional repressor for rspAB |
| ? | NC_000913 | = 1628283 | 39 (1.040) | intergenic (+20/‑69) | ydfG/rspR | NADP‑dependent 3‑hydroxy acid dehydrogenase; malonic semialdehyde reductase/transcriptional repressor for rspAB | |||||
| * | ? | NC_000913 | 3587430 = | 57 (1.440) | 4 (0.110) | 4/250 | 4.3 | 7.2% | coding (684/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic |
| ? | NC_000913 | 3587464 = | 51 (1.390) | coding (650/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic | |||||
| * | ? | NC_000913 | 3462350 = | 51 (1.290) | 5 (0.140) | 4/250 | 4.3 | 10.2% | coding (377/378 nt) coding (7/588 nt) |
gspI gspJ |
general secretory pathway component, cryptic putative general secretory pathway component, cryptic |
| ? | NC_000913 | 3462401 = | 41 (1.120) | coding (58/588 nt) | gspJ | putative general secretory pathway component, cryptic | |||||