breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,028,1580GC25.0% 52.6 / 16.3 28intergenic (‑141/+30)yedQ/yodCputative membrane‑anchored diguanylate cyclase/uncharacterized protein
*NC_0009132,028,1590TA25.0% 40.9 / 14.8 28intergenic (‑142/+29)yedQ/yodCputative membrane‑anchored diguanylate cyclase/uncharacterized protein
*NC_0009132,028,1600GC25.0% 50.7 / 17.5 28intergenic (‑143/+28)yedQ/yodCputative membrane‑anchored diguanylate cyclase/uncharacterized protein
*NC_0009134,296,0600CT23.5% 58.1 / 14.9 34intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 45 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4233518 =41 (1.040)6 (0.170) 6/238 3.4 14.8% intergenic (‑285/‑240) lysC/pgi lysine‑sensitive aspartokinase 3/glucosephosphate isomerase
?NC_000913 4233534 = 33 (0.950)intergenic (‑301/‑224) lysC/pgi lysine‑sensitive aspartokinase 3/glucosephosphate isomerase
* ? NC_000913 = 439073049 (1.240)6 (0.160) 6/256 3.6 11.5% coding (780/1053 nt) rsgA ribosome small subunit‑dependent GTPase A
?NC_000913 = 4390752 46 (1.230)coding (758/1053 nt) rsgA ribosome small subunit‑dependent GTPase A
* ? NC_000913 2276138 =41 (1.040)6 (0.160) 6/254 3.6 13.4% coding (866/1026 nt) yejE microcin C ABC transporter permease
?NC_000913 2276159 = 39 (1.050)coding (887/1026 nt) yejE microcin C ABC transporter permease
* ? NC_000913 3149848 =22 (0.560)6 (0.160) 6/260 3.7 22.6% coding (187/885 nt) yghA putative oxidoreductase
?NC_000913 3149874 = 20 (0.530)coding (213/885 nt) yghA putative oxidoreductase
* ? NC_000913 2204447 =37 (0.940)6 (0.170) 5/248 3.9 13.5% intergenic (+158/‑149) yehK/yehL uncharacterized protein/putative hexameric AAA+ MoxR family ATPase
?NC_000913 2204492 = 43 (1.190)intergenic (+203/‑104) yehK/yehL uncharacterized protein/putative hexameric AAA+ MoxR family ATPase
* ? NC_000913 274620 =NA (NA)8 (0.220) 5/252 3.9 NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 4128795 =46 (1.160)5 (0.130) 5/258 4.0 10.0% coding (124/1161 nt) metB cystathionine gamma‑synthase, PLP‑dependent
?NC_000913 4128835 = 46 (1.220)coding (164/1161 nt) metB cystathionine gamma‑synthase, PLP‑dependent
* ? NC_000913 = 162827737 (0.940)5 (0.130) 5/256 4.0 11.9% intergenic (+14/‑75) ydfG/rspR NADP‑dependent 3‑hydroxy acid dehydrogenase; malonic semialdehyde reductase/transcriptional repressor for rspAB
?NC_000913 = 1628283 39 (1.040)intergenic (+20/‑69) ydfG/rspR NADP‑dependent 3‑hydroxy acid dehydrogenase; malonic semialdehyde reductase/transcriptional repressor for rspAB
* ? NC_000913 3587430 =57 (1.440)4 (0.110) 4/250 4.3 7.2% coding (684/744 nt) ugpQ glycerophosphodiester phosphodiesterase, cytosolic
?NC_000913 3587464 = 51 (1.390)coding (650/744 nt) ugpQ glycerophosphodiester phosphodiesterase, cytosolic
* ? NC_000913 3462350 =51 (1.290)5 (0.140) 4/250 4.3 10.2% coding (377/378 nt)
coding (7/588 nt)
gspI
gspJ
general secretory pathway component, cryptic
putative general secretory pathway component, cryptic
?NC_000913 3462401 = 41 (1.120)coding (58/588 nt) gspJ putative general secretory pathway component, cryptic