| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | AY305378 | 84,810 | ISAE1 (+) +8 bp | [hoxW] | [hoxW] | |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AY305378 | 84810 = | 0 (0.000) | 29 (1.200) | 27/204 | 0.1 | 100% | coding (496/498 nt) | hoxW | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease |
| ? | AY305378 | = 94337 | NA (NA) | noncoding (1313/1313 nt) | ISAE1 | repeat region | |||||
| * | ? | AY305378 | = 84817 | 0 (0.000) | 28 (1.170) | 20/202 | 0.2 | 100% | intergenic (+5/‑18) | hoxW/hoxI | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease/HoxI |
| ? | AY305378 | 93025 = | NA (NA) | noncoding (1/1313 nt) | ISAE1 | repeat region | |||||
CAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAGGCGGT > AY305378/94256‑94464 | cAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACgg < 2:831165/116‑1 (MQ=255)cAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACgg > 1:831165/1‑116 (MQ=255)cAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTg > 2:836897/1‑133 (MQ=255)cAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTg < 1:836897/133‑1 (MQ=255) aaaCAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGcc > 2:430113/1‑134 (MQ=255) cTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTc < 1:33886/115‑1 (MQ=255) cTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTc > 2:33886/1‑115 (MQ=255) tATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCt > 2:821114/1‑79 (MQ=255) tATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCt < 1:821114/79‑1 (MQ=255) cGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCcgac > 1:175238/1‑134 (MQ=255) gCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAgcg < 1:430113/133‑1 (MQ=255) aCCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTgg > 1:117144/1‑134 (MQ=255) tGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGa > 2:984504/1‑134 (MQ=255) aaaCCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGAc < 1:984504/133‑1 (MQ=255) aaaCCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGAc < 2:117144/133‑1 (MQ=255) cGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGAc > 2:640099/1‑123 (MQ=255) cGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGAc < 1:640099/123‑1 (MQ=255) gATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGc > 1:866306/1‑91 (MQ=255) gATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGc < 2:866306/91‑1 (MQ=255) gATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTg > 1:501062/1‑134 (MQ=255) cTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGAcgc > 2:561026/1‑117 (MQ=255) cTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGAcgc < 1:561026/117‑1 (MQ=255) gAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCAc > 1:922775/1‑72 (MQ=255) gAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCAc < 2:922775/72‑1 (MQ=255) aaGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAGGCGGt < 1:193260/134‑1 (MQ=255) | CAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAGGCGGT > AY305378/94256‑94464 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |