| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | AY305378 | 84,810 | ISAE1 (+) +8 bp | [hoxW] | [hoxW] | |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AY305378 | 84810 = | 0 (0.000) | 29 (1.200) | 27/204 | 0.1 | 100% | coding (496/498 nt) | hoxW | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease |
| ? | AY305378 | = 94337 | NA (NA) | noncoding (1313/1313 nt) | ISAE1 | repeat region | |||||
| * | ? | AY305378 | = 84817 | 0 (0.000) | 28 (1.170) | 20/202 | 0.2 | 100% | intergenic (+5/‑18) | hoxW/hoxI | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease/HoxI |
| ? | AY305378 | 93025 = | NA (NA) | noncoding (1/1313 nt) | ISAE1 | repeat region | |||||
GTTCCATTCTCGTCGTGCGATTTTTCCCGAAGGTGCCCTAAGGTTTATAACCGTCGCCTCTTAGGCGATCGGCCCATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGCTTGGC > AY305378/92908‑93155 | gTTCCATTCTCGTCGTGCGATTTTTCCCGAAGGTGCCCTAAGGTTTATAACCGTCGCCTCTTAGGCGATCGGCCCATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAAt < 2:504551/133‑1 (MQ=255) gCCCTAAGGTTTATAACCGTCGCCTCTTAGGCGATCGGCCCATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATcgcg > 2:184161/1‑131 (MQ=255) aCCGTCGCCTCTTAGGCGATCGGCCCATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCg > 2:996805/1‑134 (MQ=255) tCGCCTCTTAGGCGATCGGCCCATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGa < 2:28163/134‑1 (MQ=255) ccTCTTAGGCGATCGGCCCATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGc < 1:380687/90‑1 (MQ=255) ccTCTTAGGCGATCGGCCCATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGc > 2:380687/1‑90 (MQ=255) ctctTAGGCGATCGGCCCATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAg > 2:607042/1‑134 (MQ=255) tCGGCCCATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACgg < 1:184161/134‑1 (MQ=255) ggCCCATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTg < 1:607042/134‑1 (MQ=255) gCCCATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTgc > 1:734466/1‑134 (MQ=255) cATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAgg < 1:137035/118‑1 (MQ=255) cATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAgg > 2:137035/1‑118 (MQ=255) gCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCt < 2:734466/133‑1 (MQ=255) aTGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGc < 2:55749/56‑1 (MQ=255) aTGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGc > 1:55749/1‑56 (MQ=255) ttGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGcc > 1:658854/1‑134 (MQ=255) gacgacAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCGTGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCtt > 1:1051015/1‑134 (MQ=255) gacAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTg > 1:776845/1‑96 (MQ=40) gacAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTg < 2:776845/96‑1 (MQ=40) gacAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTgcg > 1:680815/1‑134 (MQ=37) acAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTgcgc < 1:996805/134‑1 (MQ=37) ccGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGCTTggc < 2:1051015/133‑1 (MQ=31) | GTTCCATTCTCGTCGTGCGATTTTTCCCGAAGGTGCCCTAAGGTTTATAACCGTCGCCTCTTAGGCGATCGGCCCATTTTGGAGCGTCGCATGGAAGACGGCATTGACGACAATTCCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGCTTGGC > AY305378/92908‑93155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |