| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_017635 | 1,704,950 | (GTTATTT)2→1 | pseudogene (5322‑5328/5428 nt) | ECW_RS08400 ← | ECSE_1600 family autotransporter |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_017635 | 1704941 | 1704947 | 7 | 47 [0] | [0] 46 | ECW_RS08400 | ECSE_1600 family autotransporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | 1704948 = | 0 (0.000) | 40 (1.220) | 32/80 | 0.1 | 100% | pseudogene (5330/5428 nt) | ECW_RS08400 | ECSE_1600 family autotransporter |
| ? | NC_017635 | = 1704940 | 0 (0.000) | pseudogene (5338/5428 nt) | ECW_RS08400 | ECSE_1600 family autotransporter | |||||
GTGCGCGTAATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_017635/1705002‑1704948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaataacaaCCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGTGATAAAGGCT < NC_017635/1704940‑1704894 GTGCGCGTAATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAAT < 1:253704/50‑1 CGCGTAATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAAC < 2:889469/50‑1 GCGTAATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACA < 2:319467/50‑1 GCGTAATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAAC > 1:549492/1‑49 CGTACTCTCGGTGCATTACTTACCGGGGTTGAGGCGAAAGTAAATAACAA < 2:1074780/50‑1 GTAATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAAC > 2:1566526/1‑50 TAATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACC < 1:993160/50‑1 AATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCT > 1:270952/1‑50 ATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCTT < 1:658050/50‑1 ATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCT < 1:1089784/49‑1 ATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCT > 2:993835/1‑49 ATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCT < 1:1981763/49‑1 GGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCTTA < 2:1810670/46‑1 GTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTG > 2:21246/1‑50 GTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTG < 1:733384/50‑1 GTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTG < 2:1258776/50‑1 GTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTG < 1:974620/50‑1 TGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTGT < 2:1519762/50‑1 GAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTGTG > 1:1851922/1‑50 AGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGG < 2:1893517/50‑1 TACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGGG < 2:640460/50‑1 TACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGGG < 1:704074/50‑1 TACGTACCGGGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGG > 2:67582/1‑49 TACCGGGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATG < 2:22273/50‑1 GGGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGG > 1:1026719/1‑50 GGGTTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGT > 1:2075190/1‑50 GGTTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTG > 2:438151/1‑50 GGTTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTG > 1:908245/1‑50 GGTTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTG > 2:858359/1‑50 GTTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGT > 1:335122/1‑50 TTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTG < 2:734985/50‑1 TTGAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTG > 1:66936/1‑50 GAGGCGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGC > 1:1903074/1‑49 GCGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACT < 1:365293/50‑1 GCGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAAC > 2:1357762/1‑49 GCGAAAGTAAATAACAACCTTAGCCTGTCGGGGAATGTCGGTGTGCAACT < 1:1151567/50‑1 CGAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTA < 1:1768757/50‑1 GAAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAG < 1:1110806/50‑1 AAAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGG > 1:737658/1‑50 AAGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGT > 2:748771/1‑50 AGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGTG < 1:1724924/50‑1 AGTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGT > 2:1295772/1‑49 GTAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGTGA > 2:1226276/1‑50 TAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGTGA > 2:115284/1‑49 TAAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGTGA > 2:1100762/1‑49 AAATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGTGAT > 1:480708/1‑49 AATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGTGATA < 1:1970855/49‑1 ATAACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGTGATA > 1:1855836/1‑48 ACAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGTGATAAAGGC > 1:150988/1‑50 CAACCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGTGATAAAGGCT < 1:1540611/50‑1 GTGCGCGTAATCTCGGTGAAGTACGTACCGGGGTTGAGGCGAAAGTAAATAACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_017635/1705002‑1704948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaataacaaCCTTAGCCTGTGGGGGAATGTCGGTGTGCAACTAGGTGATAAAGGCT < NC_017635/1704940‑1704894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |