Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_017635	1,704,950	(GTTATTT)2→1	pseudogene (5322‑5328/5428 nt)	ECW_RS08400 ←	ECSE_1600 family autotransporter

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_017635	1704941	1704947	7	47 [0]	[0] 46	ECW_RS08400	ECSE_1600 family autotransporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_017635	1704948 =	0 (0.000)	40 (1.220)	32/80	0.1	100%	pseudogene (5330/5428 nt)	ECW_RS08400	ECSE_1600 family autotransporter
	?	NC_017635	= 1704940	0 (0.000)					pseudogene (5338/5428 nt)	ECW_RS08400	ECSE_1600 family autotransporter

ATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGTTGTTATTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGATTACG  >  NC_017635/1704901‑1704997                                                |                                                  agcctttatcacctagttgcacaccgacattcccccacaggctaaggttg                                                 <  1:1540611‑M1/3‑1 (MQ=255)  gcctttatcacctagttgcacaccgacattcccccacaggctaaggttgt                                                >  1:150988‑M1/47‑50 (MQ=255)       tatcacctagttgcacaccgacattcccccacaggctaaggTTGTTAtt                                            <  1:1970855‑M1/8‑1 (MQ=255)       tatcacctagttgcacaccgacattcccccacaggctaaggTTGTTAt                                             >  1:1855836‑M1/42‑48 (MQ=255)        atcacctagttgcacaccgacattcccccacaggctaaggTTGTTAttt                                           >  1:480708‑M1/41‑49 (MQ=255)         tcacctagttgcacaccgacattcccccacaggctaaggTTGTTATTTa                                          >  2:1100762‑M1/40‑49 (MQ=255)         tcacctagttgcacaccgacattcccccacaggctaaggTTGTTATTTa                                          >  2:115284‑M1/40‑49 (MQ=255)         tcacctagttgcacaccgacattcccccacaggctaaggTTGTTATTTAc                                         >  2:1226276‑M1/40‑50 (MQ=255)          cacctagttgcacaccgacattcccccacaggctaaggTTGTTATTTACt                                        <  1:1724924‑M1/12‑1 (MQ=255)           acctagttgcacaccgacattcccccacaggctaaggTTGTTATTTACtt                                       >  2:748771‑M1/38‑50 (MQ=255)           acctagttgcacaccgacattcccccacaggctaaggTTGTTATTTACt                                        >  2:1295772‑M1/38‑49 (MQ=255)            cctagttgcacaccgacattcccccacaggctaaggTTGTTATTTACttt                                      >  1:737658‑M1/37‑50 (MQ=255)             ctagttgcacaccgacattcccccacaggctaaggTTGTTATTTACTTTc                                     <  1:1110806‑M1/15‑1 (MQ=255)              tagttgcacaccgacattcccccacaggctaaggTTGTTATTTACTTTCg                                    <  1:1768757‑M1/16‑1 (MQ=255)               agttgcacaccgacattccccgacaggctaaggTTGTTATTTACTTTCGc                                   <  1:1151567‑M1/17‑1 (MQ=255)               agttgcacaccgacattcccccacaggctaaggTTGTTATTTACTTTCGc                                   <  1:365293‑M1/17‑1 (MQ=255)                gttgcacaccgacattcccccacaggctaaggTTGTTATTTACTTTCGc                                   >  2:1357762‑M1/33‑49 (MQ=255)                   gcacaccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTc                                >  1:1903074‑M1/30‑49 (MQ=255)                    cacaccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCaa                              <  2:734985‑M1/22‑1 (MQ=255)                    cacaccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCaa                              >  1:66936‑M1/29‑50 (MQ=255)                     acaccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAAc                             >  1:335122‑M1/28‑50 (MQ=255)                      caccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAAcc                            >  2:438151‑M1/27‑50 (MQ=255)                      caccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAAcc                            >  2:858359‑M1/27‑50 (MQ=255)                      caccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAAcc                            >  1:908245‑M1/27‑50 (MQ=255)                       accgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAAccc                           >  1:2075190‑M1/26‑50 (MQ=255)                        ccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAAcccc                          >  1:1026719‑M1/25‑50 (MQ=255)                            cattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGgta                      <  2:22273‑M1/30‑1 (MQ=255)                                cccccacaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGgtacgta                  <  2:640460‑M1/34‑1 (MQ=255)                                cccccacaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGgtacgta                  <  1:704074‑M1/34‑1 (MQ=255)                                 ccccacaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGgtacgta                  >  2:67582‑M1/16‑49 (MQ=255)                                  cccacaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACt                <  2:1893517‑M1/36‑1 (MQ=255)                                    cacaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTc              >  1:1851922‑M1/13‑50 (MQ=255)                                     acaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCa             <  2:1519762‑M1/39‑1 (MQ=255)                                      caggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCAc            <  1:974620‑M1/40‑1 (MQ=255)                                      caggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCAc            <  1:733384‑M1/40‑1 (MQ=255)                                      caggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCAc            <  2:1258776‑M1/40‑1 (MQ=255)                                      caggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCAc            >  2:21246‑M1/11‑50 (MQ=255)                                           taaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCAcc           <  2:1810670‑M1/41‑1 (MQ=255)                                            aaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGAt      <  1:658050‑M1/46‑1 (MQ=255)                                             aggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGAtt     >  1:270952‑M1/4‑50 (MQ=255)                                             aggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGAt      >  2:993835‑M1/4‑49 (MQ=255)                                             aggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGAt      <  1:1981763‑M1/46‑1 (MQ=255)                                             aggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGAt      <  1:1089784‑M1/46‑1 (MQ=255)                                              ggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGATTa    <  1:993160‑M1/48‑1 (MQ=255)                                               gTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGATTAc   >  2:1566526‑M1/2‑50 (MQ=255)                                                TTGTTATTTACTTTCGCCTCAACCCCGGTAAGTAATGCACCGAGAGTAcg  <  2:1074780‑M1/50‑1 (MQ=255)                                                |                                                  ATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGTTGTTATTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGATTACG  >  NC_017635/1704901‑1704997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑