Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_017635 | 1,704,950 | (GTTATTT)2→1 | pseudogene (5322‑5328/5428 nt) | ECW_RS08400 ← | ECSE_1600 family autotransporter |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_017635 | 1704941 | 1704947 | 7 | 47 [0] | [0] 46 | ECW_RS08400 | ECSE_1600 family autotransporter |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_017635 | 1704948 = | 0 (0.000) | 40 (1.220) | 32/80 | 0.1 | 100% | pseudogene (5330/5428 nt) | ECW_RS08400 | ECSE_1600 family autotransporter |
? | NC_017635 | = 1704940 | 0 (0.000) | pseudogene (5338/5428 nt) | ECW_RS08400 | ECSE_1600 family autotransporter |
ATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGTTGTTATTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGATTACG > NC_017635/1704901‑1704997 | agcctttatcacctagttgcacaccgacattcccccacaggctaaggttg < 1:1540611‑M1/3‑1 (MQ=255) gcctttatcacctagttgcacaccgacattcccccacaggctaaggttgt > 1:150988‑M1/47‑50 (MQ=255) tatcacctagttgcacaccgacattcccccacaggctaaggTTGTTAtt < 1:1970855‑M1/8‑1 (MQ=255) tatcacctagttgcacaccgacattcccccacaggctaaggTTGTTAt > 1:1855836‑M1/42‑48 (MQ=255) atcacctagttgcacaccgacattcccccacaggctaaggTTGTTAttt > 1:480708‑M1/41‑49 (MQ=255) tcacctagttgcacaccgacattcccccacaggctaaggTTGTTATTTa > 2:1100762‑M1/40‑49 (MQ=255) tcacctagttgcacaccgacattcccccacaggctaaggTTGTTATTTa > 2:115284‑M1/40‑49 (MQ=255) tcacctagttgcacaccgacattcccccacaggctaaggTTGTTATTTAc > 2:1226276‑M1/40‑50 (MQ=255) cacctagttgcacaccgacattcccccacaggctaaggTTGTTATTTACt < 1:1724924‑M1/12‑1 (MQ=255) acctagttgcacaccgacattcccccacaggctaaggTTGTTATTTACtt > 2:748771‑M1/38‑50 (MQ=255) acctagttgcacaccgacattcccccacaggctaaggTTGTTATTTACt > 2:1295772‑M1/38‑49 (MQ=255) cctagttgcacaccgacattcccccacaggctaaggTTGTTATTTACttt > 1:737658‑M1/37‑50 (MQ=255) ctagttgcacaccgacattcccccacaggctaaggTTGTTATTTACTTTc < 1:1110806‑M1/15‑1 (MQ=255) tagttgcacaccgacattcccccacaggctaaggTTGTTATTTACTTTCg < 1:1768757‑M1/16‑1 (MQ=255) agttgcacaccgacattccccgacaggctaaggTTGTTATTTACTTTCGc < 1:1151567‑M1/17‑1 (MQ=255) agttgcacaccgacattcccccacaggctaaggTTGTTATTTACTTTCGc < 1:365293‑M1/17‑1 (MQ=255) gttgcacaccgacattcccccacaggctaaggTTGTTATTTACTTTCGc > 2:1357762‑M1/33‑49 (MQ=255) gcacaccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTc > 1:1903074‑M1/30‑49 (MQ=255) cacaccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCaa < 2:734985‑M1/22‑1 (MQ=255) cacaccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCaa > 1:66936‑M1/29‑50 (MQ=255) acaccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAAc > 1:335122‑M1/28‑50 (MQ=255) caccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAAcc > 2:438151‑M1/27‑50 (MQ=255) caccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAAcc > 2:858359‑M1/27‑50 (MQ=255) caccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAAcc > 1:908245‑M1/27‑50 (MQ=255) accgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAAccc > 1:2075190‑M1/26‑50 (MQ=255) ccgacattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAAcccc > 1:1026719‑M1/25‑50 (MQ=255) cattcccccacaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGgta < 2:22273‑M1/30‑1 (MQ=255) cccccacaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGgtacgta < 2:640460‑M1/34‑1 (MQ=255) cccccacaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGgtacgta < 1:704074‑M1/34‑1 (MQ=255) ccccacaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGgtacgta > 2:67582‑M1/16‑49 (MQ=255) cccacaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACt < 2:1893517‑M1/36‑1 (MQ=255) cacaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTc > 1:1851922‑M1/13‑50 (MQ=255) acaggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCa < 2:1519762‑M1/39‑1 (MQ=255) caggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCAc < 1:974620‑M1/40‑1 (MQ=255) caggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCAc < 1:733384‑M1/40‑1 (MQ=255) caggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCAc < 2:1258776‑M1/40‑1 (MQ=255) caggctaaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCAc > 2:21246‑M1/11‑50 (MQ=255) taaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCAcc < 2:1810670‑M1/41‑1 (MQ=255) aaggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGAt < 1:658050‑M1/46‑1 (MQ=255) aggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGAtt > 1:270952‑M1/4‑50 (MQ=255) aggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGAt > 2:993835‑M1/4‑49 (MQ=255) aggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGAt < 1:1981763‑M1/46‑1 (MQ=255) aggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGAt < 1:1089784‑M1/46‑1 (MQ=255) ggTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGATTa < 1:993160‑M1/48‑1 (MQ=255) gTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGATTAc > 2:1566526‑M1/2‑50 (MQ=255) TTGTTATTTACTTTCGCCTCAACCCCGGTAAGTAATGCACCGAGAGTAcg < 2:1074780‑M1/50‑1 (MQ=255) | ATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGTTGTTATTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCGAGATTACG > NC_017635/1704901‑1704997 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |