Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_017635 | 1,704,950 | (GTTATTT)2→1 | pseudogene (5322‑5328/5428 nt) | ECW_RS08400 ← | ECSE_1600 family autotransporter |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_017635 | 1704941 | 1704947 | 7 | 47 [0] | [0] 46 | ECW_RS08400 | ECSE_1600 family autotransporter |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_017635 | 1704948 = | 0 (0.000) | 40 (1.220) | 32/80 | 0.1 | 100% | pseudogene (5330/5428 nt) | ECW_RS08400 | ECSE_1600 family autotransporter |
? | NC_017635 | = 1704940 | 0 (0.000) | pseudogene (5338/5428 nt) | ECW_RS08400 | ECSE_1600 family autotransporter |
TATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGTTGTTATTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCG > NC_017635/1704891‑1704989 | tataGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAgg > 1:344507/1‑50 (MQ=255) taGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAgg < 1:82563/48‑1 (MQ=255) aGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttg < 1:1540611‑M2/50‑4 (MQ=255) gCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgt > 1:150988‑M2/1‑46 (MQ=255) tATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttatt < 1:1970855‑M2/49‑9 (MQ=255) tATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttat > 1:1855836‑M2/1‑41 (MQ=255) aTCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttattt > 1:480708‑M2/1‑40 (MQ=255) tCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttatttac > 2:1226276‑M2/1‑39 (MQ=255) tCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttattta > 2:115284‑M2/1‑39 (MQ=255) tCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttattta > 2:1100762‑M2/1‑39 (MQ=255) cACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttatttact < 1:1724924‑M2/50‑13 (MQ=255) aCCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttatttactt > 2:748771‑M2/1‑37 (MQ=255) aCCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttatttact > 2:1295772‑M2/1‑37 (MQ=255) ccTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttatttacttt > 1:737658‑M2/1‑36 (MQ=255) cTAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttatttactttc < 1:1110806‑M2/50‑16 (MQ=255) tAGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttatttactttcg < 1:1768757‑M2/50‑17 (MQ=255) aGTTGCACACCGACATTCCCCGACAGGCTAAGGttgttatttactttcgc < 1:1151567‑M2/50‑18 (MQ=255) aGTTGCACACCGACATTCCCCCACAGGCTAAGGttgttatttactttcgc < 1:365293‑M2/50‑18 (MQ=255) gTTGCACACCGACATTCCCCCACAGGCTAAGGttgttatttactttcgc > 2:1357762‑M2/1‑32 (MQ=255) gCACACCGACATTCCCCCACAGGCTAAGGttgttatttactttcgcctc > 1:1903074‑M2/1‑29 (MQ=255) cacaCCGACATTCCCCCACAGGCTAAGGttgttatttactttcgcctcaa > 1:66936‑M2/1‑28 (MQ=255) cacaCCGACATTCCCCCACAGGCTAAGGttgttatttactttcgcctcaa < 2:734985‑M2/50‑23 (MQ=255) acacCGACATTCCCCCACAGGCTAAGGttgttatttactttcgcctcaac > 1:335122‑M2/1‑27 (MQ=255) cacCGACATTCCCCCACAGGCTAAGGttgttatttactttcgcctcaacc > 1:908245‑M2/1‑26 (MQ=255) cacCGACATTCCCCCACAGGCTAAGGttgttatttactttcgcctcaacc > 2:438151‑M2/1‑26 (MQ=255) cacCGACATTCCCCCACAGGCTAAGGttgttatttactttcgcctcaacc > 2:858359‑M2/1‑26 (MQ=255) acCGACATTCCCCCACAGGCTAAGGttgttatttactttcgcctcaaccc > 1:2075190‑M2/1‑25 (MQ=255) ccGACATTCCCCCACAGGCTAAGGttgttatttactttcgcctcaacccc > 1:1026719‑M2/1‑24 (MQ=255) cATTCCCCCACAGGCTAAGGttgttatttactttcgcctcaaccccggta < 2:22273‑M2/50‑31 (MQ=255) cccccACAGGCTAAGGttgttatttactttcgcctcaaccccggtacgta < 1:704074‑M2/50‑35 (MQ=255) cccccACAGGCTAAGGttgttatttactttcgcctcaaccccggtacgta < 2:640460‑M2/50‑35 (MQ=255) ccccACAGGCTAAGGttgttatttactttcgcctcaaccccggtacgta > 2:67582‑M2/1‑15 (MQ=255) cccACAGGCTAAGGttgttatttactttcgcctcaaccccggtacgtact < 2:1893517‑M2/50‑37 (MQ=255) cacaGGCTAAGGttgttatttactttcgcctcaaccccggtacgtacttc > 1:1851922‑M2/1‑12 (MQ=255) acaGGCTAAGGttgttatttactttcgcctcaaccccggtacgtacttca < 2:1519762‑M2/50‑40 (MQ=255) caGGCTAAGGttgttatttactttcgcctcaaccccggtacgtacttcac < 2:1258776‑M2/50‑41 (MQ=255) caGGCTAAGGttgttatttactttcgcctcaaccccggtacgtacttcac < 1:974620‑M2/50‑41 (MQ=255) caGGCTAAGGttgttatttactttcgcctcaaccccggtacgtacttcac < 1:733384‑M2/50‑41 (MQ=255) caGGCTAAGGttgttatttactttcgcctcaaccccggtacgtacttcac > 2:21246‑M2/1‑10 (MQ=255) tAAGGttgttatttactttcgcctcaaccccggtacgtacttcacc < 2:1810670‑M2/46‑42 (MQ=255) aaGGttgttatttactttcgcctcaaccccggtacgtacttcaccgagat < 1:658050‑M2/50‑47 (MQ=255) aGGttgttatttactttcgcctcaaccccggtacgtacttcaccgagatt > 1:270952‑M2/1‑3 (MQ=255) aGGttgttatttactttcgcctcaaccccggtacgtacttcaccgagat > 2:993835‑M2/1‑3 (MQ=255) aGGttgttatttactttcgcctcaaccccggtacgtacttcaccgagat < 1:1981763‑M2/49‑47 (MQ=255) aGGttgttatttactttcgcctcaaccccggtacgtacttcaccgagat < 1:1089784‑M2/49‑47 (MQ=255) ggttgttatttactttcgcctcaaccccggtacgtacttcaccgagatta < 1:993160‑M2/50‑49 (MQ=255) gttgttatttactttcgcctcaaccccggtacgtacttcaccgagattac > 2:1566526‑M2/1‑1 (MQ=255) | TATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGTTGTTATTTGTTATTTACTTTCGCCTCAACCCCGGTACGTACTTCACCG > NC_017635/1704891‑1704989 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |