| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_017635 | 3,614,356 | Δ11 bp | coding (1926‑1936/1941 nt) | csrD ← | RNase E specificity factor CsrD |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_017635 | 3614356 | 3614366 | 11 | 54 [0] | [0] 51 | csrD | RNase E specificity factor CsrD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | = 3614355 | 0 (0.000) | 51 (1.260) | 37/98 | 0.1 | 100% | coding (1937/1941 nt) | csrD | RNase E specificity factor CsrD |
| ? | NC_017635 | 3614367 = | 0 (0.000) | coding (1925/1941 nt) | csrD | RNase E specificity factor CsrD | |||||
ACGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_017635/3614307‑3614355‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > NC_017635/3614367‑3614412 ACGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAT < 1:705934/50‑1 GCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGT < 1:1814087/50‑1 AGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGA < 2:810338/50‑1 AGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGA < 1:1863729/50‑1 CGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAA > 1:1941806/1‑49 GCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATT > 2:140403/1‑50 GTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTT < 1:920132/50‑1 TTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTT < 1:892504/50‑1 TTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTT > 1:2009465/1‑50 TATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTT > 1:1697185/1‑50 TATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTT > 1:1210980/1‑50 TTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCA > 2:593857/1‑50 TCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCAC > 1:1845683/1‑50 ACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGT > 1:711513/1‑49 ACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGT > 1:7021/1‑49 ACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGT > 1:42515/1‑49 CGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTA < 2:1618736/50‑1 CGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTT < 2:1542243/49‑1 CGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGT > 1:1397939/1‑48 CGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGT < 1:147002/48‑1 CGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACG < 2:1150735/47‑1 CGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACG < 1:1735018/47‑1 CGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACG < 1:1733581/47‑1 TGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGT < 2:638536/50‑1 TGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAG > 2:737582/1‑49 AAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTAT > 1:1956710/1‑50 AAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTAT > 2:651406/1‑50 AAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTA < 1:1406338/49‑1 CAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAG > 1:2074037/1‑50 CAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAG < 1:1157536/50‑1 AGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGT > 2:139024/1‑50 GATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTG < 2:854038/50‑1 GATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTG < 1:1334235/50‑1 GATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTG < 1:1300124/50‑1 GATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTG < 2:182209/50‑1 GATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTG < 1:1813340/50‑1 GATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTG < 2:1280528/50‑1 ATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGG < 1:672172/50‑1 AAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTG > 1:1130955/1‑50 CGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGA < 1:115282/50‑1 CGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGT > 1:993200/1‑48 GGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAG > 2:1306871/1‑50 GGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAG < 1:754699/50‑1 GGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAG < 1:1879611/50‑1 CAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGA > 1:1875419/1‑50 AGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGAC > 2:1940113/1‑50 AGGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGAC < 2:602984/50‑1 GGTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACG > 1:28464/1‑50 TTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCG < 2:1618396/50‑1 TTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCG < 1:236328/50‑1 AAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > 1:601777/1‑49 ACGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_017635/3614307‑3614355‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > NC_017635/3614367‑3614412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |