Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_017635 | 3,614,356 | Δ11 bp | coding (1926‑1936/1941 nt) | csrD ← | RNase E specificity factor CsrD |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_017635 | 3614356 | 3614366 | 11 | 54 [0] | [0] 51 | csrD | RNase E specificity factor CsrD |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_017635 | = 3614355 | 0 (0.000) | 51 (1.260) | 37/98 | 0.1 | 100% | coding (1937/1941 nt) | csrD | RNase E specificity factor CsrD |
? | NC_017635 | 3614367 = | 0 (0.000) | coding (1925/1941 nt) | csrD | RNase E specificity factor CsrD |
GACGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTG > NC_017635/3614306‑3614401 | gaCGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTaaa < 2:603699/50‑1 (MQ=255) gaCGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTaaa < 2:295865/50‑1 (MQ=255) gaCGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTaaa < 1:149098/50‑1 (MQ=255) aCGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAt < 1:705934‑M1/50‑2 (MQ=255) gCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgt < 1:1814087‑M1/50‑4 (MQ=255) aGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtga < 2:810338‑M1/50‑6 (MQ=255) aGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtga < 1:1863729‑M1/50‑6 (MQ=255) cgcgcgTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaa > 1:1941806‑M1/1‑43 (MQ=255) gcgTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatatt > 2:140403‑M1/1‑40 (MQ=255) gTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatatttt < 1:920132‑M1/50‑13 (MQ=255) ttATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttt > 1:2009465‑M1/1‑37 (MQ=255) ttATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttt < 1:892504‑M1/50‑14 (MQ=255) tATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatatttttt > 1:1697185‑M1/1‑36 (MQ=255) tATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatatttttt > 1:1210980‑M1/1‑36 (MQ=255) ttCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttca > 2:593857‑M1/1‑34 (MQ=255) tCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcac > 1:1845683‑M1/1‑33 (MQ=255) aCGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgt > 1:711513‑M1/1‑30 (MQ=255) aCGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgt > 1:42515‑M1/1‑30 (MQ=255) aCGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgt > 1:7021‑M1/1‑30 (MQ=255) cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgtta < 2:1618736‑M1/50‑22 (MQ=255) cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgtt < 2:1542243‑M1/49‑21 (MQ=255) cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgt < 1:147002‑M1/48‑20 (MQ=255) cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgt > 1:1397939‑M1/1‑29 (MQ=255) cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacg < 1:1735018‑M1/47‑19 (MQ=255) cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacg < 1:1733581‑M1/47‑19 (MQ=255) cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacg < 2:1150735‑M1/47‑19 (MQ=255) tGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagt < 2:638536‑M1/50‑24 (MQ=255) tGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttag > 2:737582‑M1/1‑27 (MQ=255) aaaaCAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtat > 1:1956710‑M1/1‑25 (MQ=255) aaaaCAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtat > 2:651406‑M1/1‑25 (MQ=255) aaaaCAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagta < 1:1406338‑M1/49‑25 (MQ=255) cAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaag > 1:2074037‑M1/1‑21 (MQ=255) cAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaag < 1:1157536‑M1/50‑30 (MQ=255) aGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagt > 2:139024‑M1/1‑20 (MQ=255) gATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtg < 1:1813340‑M1/50‑32 (MQ=255) gATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtg < 2:182209‑M1/50‑32 (MQ=255) gATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtg < 1:1334235‑M1/50‑32 (MQ=255) gATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtg < 2:1280528‑M1/50‑32 (MQ=255) gATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtg < 1:1300124‑M1/50‑32 (MQ=255) gATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtg < 2:854038‑M1/50‑32 (MQ=255) aTTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtgg < 1:672172‑M1/50‑33 (MQ=255) aaaCGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctg > 1:1130955‑M1/1‑15 (MQ=255) cGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtga < 1:115282‑M1/50‑39 (MQ=255) cGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgt > 1:993200‑M1/1‑12 (MQ=255) ggCAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgag > 2:1306871‑M1/1‑11 (MQ=255) ggCAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgag < 1:754699‑M1/50‑40 (MQ=255) ggCAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgag < 1:1879611‑M1/50‑40 (MQ=255) cAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgagga > 1:1875419‑M1/1‑9 (MQ=255) aGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgaggac > 2:1940113‑M1/1‑8 (MQ=255) aGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgaggac < 2:602984‑M1/50‑43 (MQ=255) ggTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgaggacg > 1:28464‑M1/1‑7 (MQ=255) ttAAAtgtgaatattttttcacgttagtatcaagtggctgtgaggacgcg < 2:1618396‑M1/50‑46 (MQ=255) ttAAAtgtgaatattttttcacgttagtatcaagtggctgtgaggacgcg < 1:236328‑M1/50‑46 (MQ=255) aaatgtgaatattttttcacgttagtatcaagtggctgtgaggacgcga > 1:601777‑M1/1‑3 (MQ=255) | GACGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTG > NC_017635/3614306‑3614401 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |