BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_017635	3,614,356	Δ11 bp	coding (1926‑1936/1941 nt)	csrD ←	RNase E specificity factor CsrD

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_017635	3614356	3614366	11	54 [0]	[0] 51	csrD	RNase E specificity factor CsrD

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_017635	= 3614355	0 (0.000)	51 (1.260)	37/98	0.1	100%	coding (1937/1941 nt)	csrD	RNase E specificity factor CsrD
*	?	NC_017635	3614367 =	0 (0.000)	51 (1.260)	37/98	0.1	100%	coding (1925/1941 nt)	csrD	RNase E specificity factor CsrD

GACGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTG  >  NC_017635/3614306‑3614401

gaCGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTaaa                                                <  2:603699/50‑1 (MQ=255)

gaCGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTaaa                                                <  2:295865/50‑1 (MQ=255)

gaCGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTaaa                                                <  1:149098/50‑1 (MQ=255)

 aCGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAt                                               <  1:705934‑M1/50‑2 (MQ=255)

   gCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgt                                             <  1:1814087‑M1/50‑4 (MQ=255)

     aGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtga                                           <  2:810338‑M1/50‑6 (MQ=255)

     aGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtga                                           <  1:1863729‑M1/50‑6 (MQ=255)

       cgcgcgTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaa                                          >  1:1941806‑M1/1‑43 (MQ=255)

          gcgTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatatt                                      >  2:140403‑M1/1‑40 (MQ=255)

            gTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatatttt                                    <  1:920132‑M1/50‑13 (MQ=255)

             ttATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttt                                   >  1:2009465‑M1/1‑37 (MQ=255)

             ttATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttt                                   <  1:892504‑M1/50‑14 (MQ=255)

              tATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatatttttt                                  >  1:1697185‑M1/1‑36 (MQ=255)

              tATTCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatatttttt                                  >  1:1210980‑M1/1‑36 (MQ=255)

                ttCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttca                                >  2:593857‑M1/1‑34 (MQ=255)

                 tCTACGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcac                               >  1:1845683‑M1/1‑33 (MQ=255)

                    aCGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgt                             >  1:711513‑M1/1‑30 (MQ=255)

                    aCGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgt                             >  1:42515‑M1/1‑30 (MQ=255)

                    aCGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgt                             >  1:7021‑M1/1‑30 (MQ=255)

                     cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgtta                           <  2:1618736‑M1/50‑22 (MQ=255)

                     cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgtt                            <  2:1542243‑M1/49‑21 (MQ=255)

                     cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgt                             <  1:147002‑M1/48‑20 (MQ=255)

                     cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgt                             >  1:1397939‑M1/1‑29 (MQ=255)

                     cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacg                              <  1:1735018‑M1/47‑19 (MQ=255)

                     cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacg                              <  1:1733581‑M1/47‑19 (MQ=255)

                     cGTGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacg                              <  2:1150735‑M1/47‑19 (MQ=255)

                       tGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagt                         <  2:638536‑M1/50‑24 (MQ=255)

                       tGAAAACAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttag                          >  2:737582‑M1/1‑27 (MQ=255)

                         aaaaCAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtat                       >  1:1956710‑M1/1‑25 (MQ=255)

                         aaaaCAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtat                       >  2:651406‑M1/1‑25 (MQ=255)

                         aaaaCAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagta                        <  1:1406338‑M1/49‑25 (MQ=255)

                             cAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaag                   >  1:2074037‑M1/1‑21 (MQ=255)

                             cAGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaag                   <  1:1157536‑M1/50‑30 (MQ=255)

                              aGATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagt                  >  2:139024‑M1/1‑20 (MQ=255)

                               gATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtg                 <  1:1813340‑M1/50‑32 (MQ=255)

                               gATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtg                 <  2:182209‑M1/50‑32 (MQ=255)

                               gATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtg                 <  1:1334235‑M1/50‑32 (MQ=255)

                               gATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtg                 <  2:1280528‑M1/50‑32 (MQ=255)

                               gATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtg                 <  1:1300124‑M1/50‑32 (MQ=255)

                               gATTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtg                 <  2:854038‑M1/50‑32 (MQ=255)

                                aTTAAACGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtgg                <  1:672172‑M1/50‑33 (MQ=255)

                                   aaaCGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctg             >  1:1130955‑M1/1‑15 (MQ=255)

                                      cGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtga          <  1:115282‑M1/50‑39 (MQ=255)

                                      cGGCAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgt            >  1:993200‑M1/1‑12 (MQ=255)

                                       ggCAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgag         >  2:1306871‑M1/1‑11 (MQ=255)

                                       ggCAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgag         <  1:754699‑M1/50‑40 (MQ=255)

                                       ggCAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgag         <  1:1879611‑M1/50‑40 (MQ=255)

                                         cAGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgagga       >  1:1875419‑M1/1‑9 (MQ=255)

                                          aGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgaggac      >  2:1940113‑M1/1‑8 (MQ=255)

                                          aGGTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgaggac      <  2:602984‑M1/50‑43 (MQ=255)

                                           ggTTAAAtgtgaatattttttcacgttagtatcaagtggctgtgaggacg     >  1:28464‑M1/1‑7 (MQ=255)

                                             ttAAAtgtgaatattttttcacgttagtatcaagtggctgtgaggacgcg   <  2:1618396‑M1/50‑46 (MQ=255)

                                             ttAAAtgtgaatattttttcacgttagtatcaagtggctgtgaggacgcg   <  1:236328‑M1/50‑46 (MQ=255)

                                               aaatgtgaatattttttcacgttagtatcaagtggctgtgaggacgcga  >  1:601777‑M1/1‑3 (MQ=255)

GACGCAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTG  >  NC_017635/3614306‑3614401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`