| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_017635 | 3,614,356 | Δ11 bp | coding (1926‑1936/1941 nt) | csrD ← | RNase E specificity factor CsrD |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_017635 | 3614356 | 3614366 | 11 | 54 [0] | [0] 51 | csrD | RNase E specificity factor CsrD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | = 3614355 | 0 (0.000) | 51 (1.260) | 37/98 | 0.1 | 100% | coding (1937/1941 nt) | csrD | RNase E specificity factor CsrD |
| ? | NC_017635 | 3614367 = | 0 (0.000) | coding (1925/1941 nt) | csrD | RNase E specificity factor CsrD | |||||
GTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > NC_017635/3614318‑3614412 | acgcagcgcgcgttattctacgtgaaaacagattaaacggcaggttaaat < 1:705934‑M2/1‑1 (MQ=255) gcagcgcgcgttattctacgtgaaaacagattaaacggcaggttaaatgt < 1:1814087‑M2/3‑1 (MQ=255) agcgcgcgttattctacgtgaaaacagattaaacggcaggttaaaTGTGa < 1:1863729‑M2/5‑1 (MQ=255) agcgcgcgttattctacgtgaaaacagattaaacggcaggttaaaTGTGa < 2:810338‑M2/5‑1 (MQ=255) cgcgcgttattctacgtgaaaacagattaaacggcaggttaaaTGTGaa > 1:1941806‑M2/44‑49 (MQ=255) gcgttattctacgtgaaaacagattaaacggcaggttaaaTGTGAATAtt > 2:140403‑M2/41‑50 (MQ=255) gttattctacgtgaaaacagattaaacggcaggttaaaTGTGAATAtttt < 1:920132‑M2/12‑1 (MQ=255) ttattctacgtgaaaacagattaaacggcaggttaaaTGTGAATAttttt > 1:2009465‑M2/38‑50 (MQ=255) ttattctacgtgaaaacagattaaacggcaggttaaaTGTGAATAttttt < 1:892504‑M2/13‑1 (MQ=255) tattctacgtgaaaacagattaaacggcaggttaaaTGTGAATAtttttt > 1:1210980‑M2/37‑50 (MQ=255) tattctacgtgaaaacagattaaacggcaggttaaaTGTGAATAtttttt > 1:1697185‑M2/37‑50 (MQ=255) ttctacgtgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCa > 2:593857‑M2/35‑50 (MQ=255) tctacgtgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCAc > 1:1845683‑M2/34‑50 (MQ=255) acgtgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACGt > 1:711513‑M2/31‑49 (MQ=255) acgtgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACGt > 1:7021‑M2/31‑49 (MQ=255) acgtgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACGt > 1:42515‑M2/31‑49 (MQ=255) cgtgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACg < 1:1735018‑M2/18‑1 (MQ=255) cgtgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACg < 1:1733581‑M2/18‑1 (MQ=255) cgtgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACg < 2:1150735‑M2/18‑1 (MQ=255) cgtgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACGtt < 2:1542243‑M2/20‑1 (MQ=255) cgtgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACGt < 1:147002‑M2/19‑1 (MQ=255) cgtgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACGt > 1:1397939‑M2/30‑48 (MQ=255) cgtgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACGTTa < 2:1618736‑M2/21‑1 (MQ=255) tgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAg > 2:737582‑M2/28‑49 (MQ=255) tgaaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGt < 2:638536‑M2/23‑1 (MQ=255) aaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTa < 1:1406338‑M2/24‑1 (MQ=255) aaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTAt > 1:1956710‑M2/26‑50 (MQ=255) aaaacagattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTAt > 2:651406‑M2/26‑50 (MQ=255) cagattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAg < 1:1157536‑M2/29‑1 (MQ=255) cagattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAg > 1:2074037‑M2/22‑50 (MQ=255) agattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGt > 2:139024‑M2/21‑50 (MQ=255) gattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTg < 1:1334235‑M2/31‑1 (MQ=255) gattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTg < 2:182209‑M2/31‑1 (MQ=255) gattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTg < 2:1280528‑M2/31‑1 (MQ=255) gattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTg < 1:1300124‑M2/31‑1 (MQ=255) gattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTg < 1:1813340‑M2/31‑1 (MQ=255) gattaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTg < 2:854038‑M2/31‑1 (MQ=255) attaaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTgg < 1:672172‑M2/32‑1 (MQ=255) aaacggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCtg > 1:1130955‑M2/16‑50 (MQ=255) cggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCtgt > 1:993200‑M2/13‑48 (MQ=255) cggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGa < 1:115282‑M2/38‑1 (MQ=255) ggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAg > 2:1306871‑M2/12‑50 (MQ=255) ggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAg < 1:754699‑M2/39‑1 (MQ=255) ggcaggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAg < 1:1879611‑M2/39‑1 (MQ=255) caggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGa > 1:1875419‑M2/10‑50 (MQ=255) aggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGAc > 2:1940113‑M2/9‑50 (MQ=255) aggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGAc < 2:602984‑M2/42‑1 (MQ=255) ggttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGAcg > 1:28464‑M2/8‑50 (MQ=255) ttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGAcgcg < 2:1618396‑M2/45‑1 (MQ=255) ttaaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGAcgcg < 1:236328‑M2/45‑1 (MQ=255) aaaTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGa > 1:601777‑M2/4‑49 (MQ=255) | GTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > NC_017635/3614318‑3614412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |