mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4338035 | 273 (0.910) | 11 (0.040) | 9/274 | NT | 3.9% | coding (527/1341 nt) | dcuB | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor |
| ? | CP009273 | = 4489326 | NA (NA) | intergenic (+9/+84) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment | |||||
| * | ? | CP009273 | 4338029 = | 272 (0.900) | 9 (0.030) | 7/278 | NT | 3.2% | coding (533/1341 nt) | dcuB | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor |
| ? | CP009273 | 4487998 = | NA (NA) | intergenic (+241/‑91) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | = 4224390 | 318 (1.060) | 9 (0.030) | 7/264 | NT | 3.0% | coding (705/1650 nt) | pgi | glucosephosphate isomerase |
| ? | CP009273 | 4224403 = | 284 (0.990) | coding (718/1650 nt) | pgi | glucosephosphate isomerase | |||||
| * | ? | CP009273 | 3904961 = | 343 (1.140) | 3 (0.010) | 3/276 | NT | 0.87% | intergenic (‑76/+238) | pstS/glmS | periplasmic phosphate binding protein, high‑affinity/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| ? | CP009273 | = 4489327 | NA (NA) | intergenic (+10/+83) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment | |||||
| * | ? | CP009273 | = 3180784 | NA (NA) | 13 (0.040) | 9/276 | NT | 4.4% | pseudogene (5/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3829186 = | 282 (0.940) | coding (104/1383 nt) | yicJ | putative transporter | |||||
| * | ? | CP009273 | 3179455 = | NA (NA) | 14 (0.050) | 13/278 | NT | 4.7% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3829191 | 283 (0.940) | coding (99/1383 nt) | yicJ | putative transporter | |||||
| * | ? | CP009273 | 3179455 = | NA (NA) | 9 (0.030) | 9/278 | NT | 2.9% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | 3357630 = | 299 (0.990) | coding (1465/2382 nt) | yhcD | putative outer membrane fimbrial subunit usher protein | |||||
| * | ? | CP009273 | 2774651 = | 321 (1.070) | 4 (0.010) | 3/278 | NT | 1.2% | coding (1435/4581 nt) | ypjA | adhesin‑like autotransporter |
| ? | CP009273 | = 2991050 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | = 2759021 | 280 (0.940) | 3 (0.010) | 3/276 | NT | 1.1% | coding (115/264 nt) | yfjM | CP4‑57 prophage; uncharacterized protein |
| ? | CP009273 | 2989720 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | 2507756 = | NA (NA) | 7 (0.020) | 5/272 | NT | 2.3% | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
| ? | CP009273 | = 2595151 | 309 (1.030) | coding (592/618 nt) | hyfA | hydrogenase 4, 4Fe‑4S subunit | |||||