breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | position | mutation | freq | annotation | gene | description |
RA | 958 | G→T | 7.9% | D208Y (GAC→TAC) | thrA → | Bifunctional aspartokinase/homoserine dehydrogenase 1 |
RA | 5,144 | G→A | 94.3% | intergenic (+124/‑90) | thrC → / → yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
RA | 8,598 | G→T | 9.0% | D121Y (GAT→TAT) | talB → | transaldolase B |
RA | 10,444 | G→T | 93.0% | F17L (TTC→TTA) | satP ← | succinate‑acetate transporter |
RA | 12,901 | G→A | 100% | D247N (GAT→AAT) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
RA | 15,125 | G→T | 11.9% | D320Y (GAT→TAT) | dnaJ → | chaperone Hsp40, DnaK co‑chaperone |
RA | 25,546 | G→T | 92.1% | D114Y (GAC→TAC) | lspA → | prolipoprotein signal peptidase (signal peptidase II) |
RA | 28,818 | G→T | 17.6% | D149Y (GAC→TAC) | dapB → | dihydrodipicolinate reductase |
RA | 29,139 | G→T | 94.2% | G256C (GGT→TGT) | dapB → | dihydrodipicolinate reductase |
RA | 41,442 | G→T | 22.7% | R164S (CGC→AGC) | caiT ← | putative transporter |
RA | 42,150 | G→A | 48.0% | intergenic (‑219/‑253) | caiT ← / → fixA | putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit |
RA | 42,415 | A→C | 11.8% | T5P (ACT→CCT) | fixA → | anaerobic carnitine reduction putative electron transfer flavoprotein subunit |
RA | 49,840 | G→T | 94.8% | A6A (GCG→GCT) | folA → | dihydrofolate reductase |
RA | 51,352 | A→T | 17.6% | G85G (GGT→GGA) | apaG ← | protein associated with Co2+ and Mg2+ efflux |
RA | 54,103 | G→T | 6.9% | R200R (CGC→CGA) | surA ← | peptidyl‑prolyl cis‑trans isomerase (PPIase) |
RA | 55,590 | G→T | 90.4% | T507K (ACG→AAG) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 56,677 | G→T | 94.1% | R145S (CGC→AGC) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 69,367 | C→A | 9.1% | M16I (ATG→ATT) | thiQ ← | thiamine, thiamine pyrophosphate ABC transporter ATPase; ThiBPQ thiamine, thiamine pyrophosphate importer |
RA | 76,763 | T→A | 6.1% | T197S (ACC→TCC) | leuC ← | 3‑isopropylmalate dehydratase large subunit |
RA | 76,821 | G→T | 31.2% | G177G (GGC→GGA) | leuC ← | 3‑isopropylmalate dehydratase large subunit |
RA | 80,123 | C→T | 93.0% | G25S (GGC→AGC) | leuL ← | leu operon leader peptide |
RA | 80,491 | G→T | 10.1% | intergenic (‑296/‑364) | leuL ← / → leuO | leu operon leader peptide/global transcription factor |
RA | 81,562 | C→A | 87.4% | I236I (ATC→ATA) | leuO → | global transcription factor |
RA | 85,890 | G→T | 30.9% | intergenic (+371/‑231) | cra → / → mraZ | transcriptional repressor‑activator for carbon metabolism/RsmH methytransferase inhibitor |
RA | 90,252 | G→T | 6.5% | A200A (GCG→GCT) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase |
RA | 92,294 | C→A | 30.9% | R386R (CGC→CGA) | murF → | UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase |
RA | 92,728 | G→T | 10.6% | L80L (CTG→CTT) | mraY → | phospho‑N‑acetylmuramoyl‑pentapeptide transferase |
RA | 93,391 | G→T | 36.7% | T301T (ACG→ACT) | mraY → | phospho‑N‑acetylmuramoyl‑pentapeptide transferase |
RA | 95,670 | G→A | 10.3% | G261S (GGC→AGC) | ftsW → | lipid II flippase; integral membrane protein involved in stabilizing FstZ ring during cell division |
RA | 97,521 | C→A | 93.8% | A90A (GCC→GCA) | murC → | UDP‑N‑acetylmuramate:L‑alanine ligase |
RA | 97,893 | T→A | 30.6% | F214L (TTT→TTA) | murC → | UDP‑N‑acetylmuramate:L‑alanine ligase |
RA | 103,467 | G→T | 91.0% | D142Y (GAT→TAT) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
RA | 104,561 | G→T | 89.9% | A124S (GCG→TCG) | secM → | regulator of secA translation |
RA | 104,582 | A→T | 34.1% | T131S (ACG→TCG) | secM → | regulator of secA translation |
RA | 109,050 | C→T | 9.2% | E13K (GAA→AAA) | zapD ← | FtsZ stabilizer |
RA | 109,800 | A→T | 19.6% | intergenic (‑94/‑131) | coaE ← / → guaC | dephospho‑CoA kinase/GMP reductase |
RA | 110,883 | A→T | 20.1% | Y318F (TAC→TTC) | guaC → | GMP reductase |
RA | 112,729 | G→T | 9.3% | D286E (GAC→GAA) | hofB ← | T2SE secretion family protein; P‑loop ATPase superfamily protein |
RA | 113,722 | G→T | 6.8% | V105V (GTC→GTA) | ppdD ← | putative prepilin peptidase‑dependent pilin |
RA | 118,873 | G→T | 100% | D99Y (GAC→TAC) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
RA | 122,790 | G→T | 12.6% | A203A (GCG→GCT) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
RA | 125,412 | G→T | 6.6% | K338N (AAG→AAT) | lpd → | lipoamide dehydrogenase, E3 component is part of three enzyme complexes |
RA | 126,488 | G→T | 5.1% | V420V (GTC→GTA) | yacH ← | uncharacterized protein |
RA | 132,639 | T→A | 21.1% | T105S (ACG→TCG) | speE ← | spermidine synthase (putrescine aminopropyltransferase) |
RA | 134,028 | G→T | 40.7% | A153A (GCG→GCT) | cueO → | multicopper oxidase (laccase) |
RA | 134,652 | G→T | 32.3% | M361I (ATG→ATT) | cueO → | multicopper oxidase (laccase) |
RA | 137,038 | Δ1 bp | 5.8% | coding (675/2391 nt) | gcd ← | glucose dehydrogenase |
RA | 142,460 | T→A | 94.8% | F298Y (TTC→TAC) | yadE → | putative polysaccharide deacetylase lipoprotein |
RA | 142,912 | G→T | 9.0% | F90L (TTC→TTA) | panD ← | aspartate 1‑decarboxylase |
RA | 143,581 | A→T | 5.3% | T43S (ACG→TCG) | yadD → | transposase_31 family protein |
RA | 151,296 | C→A | 7.8% | M206I (ATG→ATT) | htrE ← | putative outer membrane usher protein |
RA | 153,468 | C→T | 6.5% | intergenic (‑98/+272) | yadN ← / ← folK | putative fimbrial‑like adhesin protein/2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase |
RA | 153,472 | G→T | 93.2% | intergenic (‑102/+268) | yadN ← / ← folK | putative fimbrial‑like adhesin protein/2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase |
RA | 154,753 | G→T | 9.8% | G287G (GGC→GGA) | pcnB ← | poly(A) polymerase |
RA | 158,287 | C→A | 94.9% | D78Y (GAC→TAC) | ligT ← | 2'‑5' RNA ligase |
RA | 162,905 | G→T | 6.9% | V563V (GTG→GTT) | mrcB → | fused glycosyl transferase and transpeptidase |
RA | 172,107 | G→T | 26.3% | E172* (GAA→TAA) | clcA → | H(+)/Cl(‑) exchange transporter |
RA | 172,979 | G→T | 13.4% | A462A (GCG→GCT) | clcA → | H(+)/Cl(‑) exchange transporter |
RA | 176,783 | G→T | 41.5% | D354Y (GAT→TAT) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
RA | 176,864 | C→T | 15.5% | L381L (CTA→TTA) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
RA | 179,424 | G→T | 15.8% | D159Y (GAT→TAT) | cdaR → | carbohydrate diacid regulon transcriptional regulator; autoregulator |
RA | 183,669 | C→A | 18.9% | R490L (CGC→CTC) | glnD ← | uridylyltransferase |
RA | 186,279 | A→T | 31.3% | noncoding (81/136 nt) | tff → | novel sRNA, function unknown |
RA | 201,962 | A→T | 43.3% | D117V (GAT→GTT) | dnaE → | DNA polymerase III alpha subunit |
RA | 210,546 | C→A | 5.1% | V23F (GTT→TTT) | yaeP ← | UPF0253 family protein |
RA | 215,833 | G→T | 23.6% | N83K (AAC→AAA) | tsaA ← | tRNA‑Thr(GGU) m(6)t(6)A37 methyltransferase, SAM‑dependent |
RA | 217,932 | A→C | 37.2% | I59M (ATT→ATG) | metI ← | DL‑methionine transporter subunit |
RA | 229,707 | G→T | 8.2% | R246S (CGT→AGT) | mltD ← | putative membrane‑bound lytic murein transglycosylase D |
RA | 230,579 | C→T | 100% | E231K (GAA→AAA) | gloB ← | hydroxyacylglutathione hydrolase |
RA | 232,860 | G→T | 93.1% | D103Y (GAT→TAT) | dnaQ → | DNA polymerase III epsilon subunit |
RA | 233,931 | G→A | 36.0% | S37N (AGT→AAT) | yafT → | lipoprotein |
RA | 236,234 | A→T | 42.2% | V148E (GTG→GAG) | yafV ← | putative NAD(P)‑binding C‑N hydrolase family amidase |
RA | 238,195 | G→T | 92.6% | V532V (GTC→GTA) | fadE ← | acyl coenzyme A dehydrogenase |
RA | 245,779 | C→A | 9.0% | pseudogene (779/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis |
RA | 250,722 | G→T | 5.2% | intergenic (+33/+24) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
RA | 250,880 | G→T | 29.0% | P442T (CCG→ACG) | pepD ← | aminoacyl‑histidine dipeptidase (peptidase D) |
RA | 251,998 | T→C | 9.9% | K69R (AAA→AGA) | pepD ← | aminoacyl‑histidine dipeptidase (peptidase D) |
RA | 262,114 | C→A | 46.4% | D51Y (GAT→TAT) | yafY ← | lipoprotein, inner membrane; overproduction stimulates degP expression; CP4‑6 prophage |
RA | 274,735 | A→T | 89.6% | pseudogene (138/348 nt) | afuB ← | pseudogene, CP4‑6 prophage; ABC transporter permease family;Phage or Prophage Related |
RA | 279,334 | C→A | 20.9% | I141I (ATC→ATA) | yagF → | CP4‑6 prophage; dehydratase family protein |
RA | 280,268 | G→T | 9.4% | A453S (GCC→TCC) | yagF → | CP4‑6 prophage; dehydratase family protein |
RA | 289,036 | G→T | 5.5% | I198I (ATC→ATA) | yagL ← | CP4‑6 prophage; DNA‑binding protein |
RA | 291,453 | A→T | 24.6% | L452* (TTA→TAA) | intF ← | CP4‑6 prophage; putative phage integrase |
RA | 295,092 | G→T | 29.1% | G518G (GGC→GGA) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
RA | 295,695 | T→G | 7.0% | E317D (GAA→GAC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
RA | 302,428 | G→T | 27.6% | P34Q (CCG→CAG) | ecpD ← | polymerized tip adhesin of ECP fibers |
RA | 305,655 | G→T | 6.5% | S28* (TCG→TAG) | ecpB ← | ECP production pilus chaperone |
RA | 307,454 | G→A | 16.9% | intergenic (‑407/‑369) | ecpR ← / → ykgL | putative transcriptional regulator for the ecp operon/uncharacterized protein |
RA | 312,532 | G→A | 93.9% | pseudogene (349/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
RA | 314,027 | C→T | 12.7% | E2K (GAA→AAA) | rclC ← | reactive chlorine species (RCS) stress resistance inner membrane protein |
RA | 317,205 | G→A | 38.4% | intergenic (+413/‑114) | rclR → / → ykgE | reactive chlorine species (RCS)‑specific activator of the rcl genes/cysteine‑rich LutA family protein; putative electron transport chain YkgEFG component |
RA | 320,430 | A→T | 11.6% | Y216N (TAC→AAC) | ykgH ← | putative inner membrane protein |
RA | 320,920 | G→A | 89.5% | S52S (AGC→AGT) | ykgH ← | putative inner membrane protein |
RA | 321,223 | C→A | 91.4% | intergenic (‑148/+65) | ykgH ← / ← betA | putative inner membrane protein/choline dehydrogenase, a flavoprotein |
RA | 326,385 | G→T | 26.6% | P404P (CCG→CCT) | betT → | choline transporter of high affinity |
RA | 329,887 | G→T | 12.5% | I86I (ATC→ATA) | yahB ← | putative DNA‑bindng transcriptional regulator |
RA | 334,849 | G→T | 5.3% | E272* (GAA→TAA) | yahG → | DUF1116 family protein |
RA | 344,800 | G→T | 88.3% | E136D (GAG→GAT) | prpB → | 2‑methylisocitrate lyase |
RA | 345,428 | T→C | 10.3% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
RA | 347,382 | G→T | 30.4% | E153* (GAA→TAA) | prpD → | 2‑methylcitrate dehydratase |
RA | 360,752 | A→G | 100% | V331A (GTG→GCG) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,806 | G→A | 94.1% | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor/mhp operon transcriptional activator |
RA | 362,159 | G→T | 94.4% | I165I (ATC→ATA) | mhpR ← | mhp operon transcriptional activator |
RA | 365,572 | G→A | 5.8% | pseudogene (116/534 nt) | mhpC → | pseudogene, IS30 insertion |
RA | 373,757 | G→T | 5.3% | S23* (TCA→TAA) | frmB ← | S‑formylglutathione hydrolase |
RA | 380,236 | C→A | 11.2% | intergenic (‑164/‑452) | yaiS ← / → tauA | putative PIG‑L family deacetylase/taurine transporter subunit |
RA | 385,485 | C→T | 6.4% | intergenic (‑302/‑222) | hemB ← / → yaiT | 5‑aminolevulinate dehydratase (porphobilinogen synthase)/pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
RA | 385,815 | G→T | 37.4% | pseudogene (109/1458 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
RA | 386,569 | C→A | 15.0% | pseudogene (863/1458 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
RA | 394,744 | G→T | 8.9% | R16S (CGC→AGC) | yaiY ← | DUF2755 family inner membrane protein |
RA | 396,883 | A→G | 92.3% | Q14Q (CAA→CAG) | iraP → | anti‑RssB factor, RpoS stabilzer during Pi starvation; anti‑adapter protein |
RA | 397,959 | G→A | 43.1% | A253T (GCG→ACG) | phoA → | bacterial alkaline phosphatase |
RA | 402,340 | G→T | 94.4% | V160V (GTG→GTT) | aroL → | shikimate kinase II |
RA | 406,075 | C→A | 94.1% | P159Q (CCG→CAG) | mak → | manno(fructo)kinase |
RA | 411,027 | G→T | 100% | L61L (CTC→CTA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
RA | 411,446 | C→T | 5.9% | Q321Q (CAG→CAA) | sbcD ← | exonuclease, dsDNA, ATP‑dependent |
RA | 421,799 | C→A | 88.6% | I69I (ATC→ATA) | tgt → | tRNA‑guanine transglycosylase |
RA | 423,068 | C→A | 17.0% | A109E (GCG→GAG) | yajC → | SecYEG protein translocase auxillary subunit |
RA | 425,143 | G→T | 40.6% | T61T (ACG→ACT) | secF → | SecYEG protein translocase auxillary subunit |
RA | 427,603 | C→T | 18.4% | intergenic (‑134/+165) | tsx ← / ← yajI | nucleoside channel, receptor of phage T6 and colicin K/putative lipoprotein |
RA | 433,551 | G→T | 94.0% | S14Y (TCC→TAC) | yajO ← | 2‑carboxybenzaldehyde reductase |
RA | 434,663 | A→C | 93.4% | I324S (ATC→AGC) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 435,336 | G→T | 94.6% | Q100K (CAG→AAG) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 437,076 | A→T | 9.9% | K24N (AAA→AAT) | thiI → | tRNA s(4)U8 sulfurtransferase |
RA | 437,672 | T→A | 93.1% | V223E (GTG→GAG) | thiI → | tRNA s(4)U8 sulfurtransferase |
RA | 440,793 | G→T | 7.5% | R444S (CGC→AGC) | yajR ← | putative transporter |
RA | 441,811 | A→C | 14.0% | I104M (ATT→ATG) | yajR ← | putative transporter |
RA | 444,489 | G→A | 94.2% | R537C (CGT→TGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
RA | 446,369 | T→G | 44.0% | Q233P (CAG→CCG) | cyoA ← | cytochrome o ubiquinol oxidase subunit II |
RA | 450,290 | G→A | 100% | intergenic (+45/‑299) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
RA | 451,853 | C→A | 28.5% | T422N (ACC→AAC) | tig → | peptidyl‑prolyl cis/trans isomerase (trigger factor) |
RA | 453,656 | T→A | 24.6% | S259T (TCC→ACC) | clpX → | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
RA | 456,298 | T→A | 93.8% | L652Q (CTG→CAG) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 456,588 | G→T | 91.1% | D749Y (GAC→TAC) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 458,681 | C→A | 7.5% | I437I (ATC→ATA) | ppiD → | periplasmic folding chaperone, has an inactive PPIase domain |
RA | 465,341 | A→C | 29.1% | I339L (ATT→CTT) | mdlA → | putative multidrug transporter subunit of ABC superfamily, ATP‑binding component |
RA | 469,770 | C→A | 11.1% | R283L (CGT→CTT) | tesB ← | acyl‑CoA thioesterase 2 |
RA | 469,916 | Δ1 bp | 8.8% | coding (702/861 nt) | tesB ← | acyl‑CoA thioesterase 2 |
RA | 470,280 | G→T | 5.9% | A113E (GCG→GAG) | tesB ← | acyl‑CoA thioesterase 2 |
RA | 474,138 | G→T | 93.9% | intergenic (‑65/+99) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
RA | 475,502 | T→A | 22.5% | intergenic (‑128/+44) | maa ← / ← hha | maltose O‑acetyltransferase/modulator of gene expression, with H‑NS |
RA | 475,805 | C→A | 92.5% | A120A (GCG→GCT) | tomB ← | Hha toxicity attenuator; conjugation‑related protein |
RA | 476,508 | C→T | 5.3% | intergenic (‑344/+202) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
RA | 479,122 | G→T | 9.2% | F246L (TTC→TTA) | acrB ← | multidrug efflux system protein |
RA | 479,244 | C→A | 93.5% | A206S (GCC→TCC) | acrB ← | multidrug efflux system protein |
RA | 480,820 | C→T | 91.6% | D86N (GAC→AAC) | acrA ← | multidrug efflux system |
RA | 481,667 | G→A | 93.3% | A151T (GCG→ACG) | acrR → | transcriptional repressor |
RA | 486,912 | C→A | 28.0% | I15I (ATC→ATA) | apt → | adenine phosphoribosyltransferase |
RA | 488,839 | G→A | 6.4% | S431N (AGT→AAT) | dnaX → | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
RA | 500,613 | G→T | 5.6% | G82C (GGT→TGT) | ushA → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
RA | 503,734 | G→A | 6.7% | E21K (GAA→AAA) | ybaQ → | putative DNA‑binding transcriptional regulator |
RA | 509,737 | G→A | 41.5% | E97K (GAG→AAG) | cueR → | copper‑responsive regulon transcriptional regulator |
RA | 511,619 | A→T | 26.6% | Q82L (CAA→CTA) | fetA → | iron exporter, ATP‑binding subunit, ABC transporter FetAB subunit; peroxide resistance protein |
RA | 512,167 | G→T | 5.4% | A43A (GCG→GCT) | fetB → | iron exporter permease subunit, ABC transporter FetAB; peroxide resistance protein |
RA | 522,859 | T→G | 21.5% | S1381R (AGT→AGG) | rhsD → | Rhs family putative polymorphic toxin |
RA | 523,413 | G→T | 19.4% | pseudogene (6/708 nt) | rhsH → | pseudogene, Rhs familly protein |
RA | 524,334:1 | +T | 100% | pseudogene (239/491 nt) | ybbD → | pseudogene |
RA | 525,631 | C→A | 5.9% | R351L (CGC→CTC) | mnmH ← | tRNA 2‑selenouridine synthase, selenophosphate‑dependent |
RA | 527,186 | T→A | 10.3% | L164F (TTA→TTT) | allS ← | allD operon transcriptional activator |
RA | 530,466 | C→A | 100% | F365L (TTC→TTA) | gcl → | glyoxylate carboligase |
RA | 531,748 | C→A | 6.6% | Q195K (CAG→AAG) | hyi → | hydroxypyruvate isomerase |
RA | 538,153 | A→C | 6.3% | E270D (GAA→GAC) | glxK → | glycerate kinase II |
RA | 542,200 | Δ1 bp | 91.4% | coding (65/1668 nt) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
RA | 544,713 | G→T | 5.1% | D301Y (GAT→TAT) | ylbE → | NO‑induced DUF1116 protein |
RA | 546,491 | G→T | 91.1% | V199V (GTG→GTT) | ybcF → | putative carbonate kinase |
RA | 549,397 | G→T | 100% | intergenic (‑1/+2) | lpxH ← / ← ppiB | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase/peptidyl‑prolyl cis‑trans isomerase B (rotamase B) |
RA | 552,831 | A→T | 25.4% | F123I (TTC→ATC) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/ 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
RA | 554,327 | G→T | 10.5% | intergenic (+117/‑103) | sfmA → / → sfmC | FimA homolog/putative periplasmic pilus chaperone |
RA | 557,303 | A→T | 28.1% | E717D (GAA→GAT) | sfmD → | putative outer membrane export usher protein |
RA | 557,592 | G→T | 43.3% | D814Y (GAC→TAC) | sfmD → | putative outer membrane export usher protein |
RA | 557,784 | G→T | 7.9% | intergenic (+28/‑8) | sfmD → / → sfmH | putative outer membrane export usher protein/FimA homolog |
RA | 557,887 | A→T | 6.4% | S32S (TCA→TCT) | sfmH → | FimA homolog |
RA | 560,919 | G→T | 17.3% | V172V (GTC→GTA) | intD ← | DLP12 prophage; putative phage integrase |
RA | 566,230 | C→T | 5.5% | intergenic (+346/‑119) | ybcK → / → ybcL | DLP12 prophage; putative recombinase/inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family |
RA | 566,305 | G→A | 5.7% | intergenic (+421/‑44) | ybcK → / → ybcL | DLP12 prophage; putative recombinase/inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family |
RA | 568,464 | G→T | 12.4% | E30* (GAA→TAA) | ninE → | DLP12 prophage; conserved protein |
RA | 576,998 | G→T | 87.6% | pseudogene (189/309 nt) | aaaD → | pseudogene; DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
RA | 580,403 | G→T | 5.0% | N229K (AAC→AAA) | ompT ← | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) |
RA | 581,203 | A→T | 94.2% | intergenic (‑114/‑310) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)/tRNA‑OTHER |
RA | 583,341 | T→G | 100% | S33R (AGT→CGT) | ybcH ← | PRK09936 family protein |
RA | 594,191 | C→T | 15.4% | R8C (CGC→TGC) | cusA → | copper/silver efflux system, membrane component |
RA | 598,081 | G→T | 15.0% | G223C (GGC→TGC) | pheP → | phenylalanine transporter |
RA | 602,045 | C→A | 12.6% | L265L (CTG→CTT) | ybdK ← | weak gamma‑glutamyl:cysteine ligase |
RA | 603,207 | G→T | 10.4% | noncoding (18/59 nt) | sokE → | sRNA at remnant mokE/hokE locus |
RA | 607,931 | G→A | 100% | S7F (TCC→TTC) | fepA ← | iron‑enterobactin outer membrane transporter |
RA | 611,240 | G→T | 5.1% | R543L (CGC→CTC) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
RA | 615,143 | C→A | 27.4% | T171T (ACG→ACT) | fepC ← | iron‑enterobactin transporter subunit |
RA | 616,411 | C→A | 8.0% | A78A (GCG→GCT) | fepG ← | iron‑enterobactin transporter subunit |
RA | 619,048 | C→A | 37.7% | A307S (GCC→TCC) | fepB ← | iron‑enterobactin transporter subunit |
RA | 623,935 | C→A | 11.3% | I262I (ATC→ATA) | entB → | isochorismatase |
RA | 625,165 | G→A | 8.5% | G137E (GGA→GAA) | entH → | enterobactin synthesis proofreading thioesterase |
RA | 625,364 | G→T | 94.5% | G5G (GGG→GGT) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 628,732 | G→A | 10.0% | R68C (CGC→TGC) | ybdH ← | putative oxidoreductase |
RA | 638,504 | G→T | 6.3% | D321Y (GAC→TAC) | ybdR → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
RA | 638,755 | G→T | 6.1% | V404V (GTG→GTT) | ybdR → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
RA | 639,231 | G→A | 94.9% | L65F (CTT→TTT) | rnk ← | regulator of nucleoside diphosphate kinase |
RA | 647,234 | C→T | 41.2% | E27K (GAA→AAA) | citC ← | [citrate [pro‑3S]‑lyase] ligase |
RA | 647,422 | G→T | 91.7% | intergenic (‑110/‑269) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 647,509 | T→C | 94.2% | intergenic (‑197/‑182) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 648,056 | C→A | 93.1% | F122L (TTC→TTA) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
RA | 650,141 | G→T | 15.1% | V428V (GTC→GTA) | dcuC ← | anaerobic C4‑dicarboxylate transport |
RA | 651,654 | A→G | 15.6% | intergenic (‑230/‑359) | dcuC ← / → pagP | anaerobic C4‑dicarboxylate transport/phospholipid:lipid A palmitoyltransferase |
RA | 652,465 | G→T | 5.9% | L151L (CTG→CTT) | pagP → | phospholipid:lipid A palmitoyltransferase |
RA | 652,865 | Δ1 bp | 93.8% | coding (118/210 nt) | cspE → | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
RA | 654,192 | T→A | 6.0% | pseudogene (512/594 nt) | ybeM → | pseudogene, C‑N hydrolase superfamily homology;putative enzyme; Not classified; putative amidase |
RA | 662,108 | A→T | 92.3% | V522V (GTT→GTA) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 662,631 | C→A | 100% | R348L (CGC→CTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 664,243 | C→A | 27.1% | D84Y (GAT→TAT) | rsfS ← | ribosomal silencing factor |
RA | 666,998 | G→T | 25.7% | L22I (CTT→ATT) | holA ← | DNA polymerase III, delta subunit |
RA | 667,348 | G→T | 45.9% | Q99K (CAG→AAG) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
RA | 672,142 | T→A | 41.2% | intergenic (‑139/‑25) | ybeQ ← / → ybeR | Sel1 family TPR‑like repeat protein/uncharacterized protein |
RA | 689,079 | C→A | 14.2% | E445* (GAA→TAA) | miaB ← | tRNA‑i(6)A37 methylthiotransferase |
RA | 690,099 | G→T | 5.5% | P105T (CCG→ACG) | miaB ← | tRNA‑i(6)A37 methylthiotransferase |
RA | 693,739 | G→T | 47.2% | H299N (CAC→AAC) | asnB ← | asparagine synthetase B |
RA | 695,910 | G→T | 5.7% | R381S (CGC→AGC) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
RA | 702,649 | G→T | 7.4% | P367P (CCG→CCT) | glnS → | glutamyl‑tRNA synthetase |
RA | 705,588 | C→A | 94.5% | intergenic (+16/+68) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
RA | 705,997 | C→T | 8.6% | A36T (GCG→ACG) | fur ← | ferric iron uptake regulon transcriptional repressor; autorepressor |
RA | 706,097 | A→C | 50.8% | T2T (ACT→ACG) *29G (TGA→GGA) |
fur ← uof ← |
ferric iron uptake regulon transcriptional repressor; autorepressor ryhB‑regulated fur leader peptide |
RA | 706,185 | A→G | 19.8% | intergenic (‑4/+206) | uof ← / ← fldA | ryhB‑regulated fur leader peptide/flavodoxin 1 |
RA | 706,479 | C→A | 12.1% | R148L (CGT→CTT) | fldA ← | flavodoxin 1 |
RA | 723,846 | A→C | 27.2% | W115G (TGG→GGG) | kdpA ← | potassium translocating ATPase, subunit A |
RA | 724,813 | A→T | 94.8% | intergenic (+17/‑226) | ybfA → / → rhsC | DUF2517 family protein/Rhs family putative polymorphic toxin |
RA | 725,650 | G→T | 29.6% | P204P (CCG→CCT) | rhsC → | Rhs family putative polymorphic toxin |
RA | 729,149 | G→A | 15.0% | D1371N (GAT→AAT) | rhsC → | Rhs family putative polymorphic toxin |
RA | 729,456 | G→A | 40.2% | R75R (AGG→AGA) | ybfB → | putative membrane protein |
RA | 732,494 | G→T | 37.4% | pseudogene (214/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
RA | 734,870 | C→A | 7.5% | H138Q (CAC→CAA) | ybgA → | DUF1722 family protein |
RA | 735,817 | G→T | 29.5% | L285L (CTG→CTT) | phr → | deoxyribodipyrimidine photolyase, FAD‑binding |
RA | 742,840 | G→T | 15.0% | A129E (GCG→GAG) | abrB ← | regulator of aidB expression; inner membrane protein |
RA | 743,278 | G→A | 26.8% | intergenic (‑53/+99) | abrB ← / ← ybgO | regulator of aidB expression; inner membrane protein/putative fimbrial protein |
RA | 744,267 | C→T | 5.8% | E58K (GAA→AAA) | ybgO ← | putative fimbrial protein |
RA | 745,420 | C→A | 6.7% | G736C (GGT→TGT) | ybgQ ← | putative outer membrane protein |
RA | 748,382 | C→A | 11.2% | intergenic (‑131/+259) | ybgD ← / ← gltA | putative fimbrial‑like adhesin protein/citrate synthase |
RA | 750,112 | A→T | 29.0% | intergenic (‑188/‑521) | gltA ← / → sdhC | citrate synthase/succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
RA | 753,205 | C→A | 9.6% | Q21K (CAG→AAG) | sdhB → | succinate dehydrogenase, FeS subunit |
RA | 754,572 | G→T | 95.0% | E137D (GAG→GAT) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
RA | 757,353 | A→T | 29.9% | N126Y (AAT→TAT) | sucB → | dihydrolipoyltranssuccinase |
RA | 759,000 | C→A | 100% | F177L (TTC→TTA) | sucC → | succinyl‑CoA synthetase, beta subunit |
RA | 761,420 | C→T | 22.5% | intergenic (‑89/‑20) | mngR ← / → mngA | Transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon/fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
RA | 768,068 | G→T | 6.6% | P385P (CCG→CCT) | cydA → | cytochrome d terminal oxidase, subunit I |
RA | 784,901 | C→A | 5.2% | A179S (GCG→TCG) | galK ← | galactokinase |
RA | 788,902 | G→T | 94.8% | R115S (CGT→AGT) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
RA | 789,044 | G→T | 32.9% | I67I (ATC→ATA) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
RA | 792,351 | G→T | 25.5% | A114A (GCG→GCT) | modC → | molybdate transporter subunit |
RA | 793,055 | C→A | 5.5% | S349* (TCG→TAG) | modC → | molybdate transporter subunit |
RA | 796,379 | A→T | 5.0% | P55P (CCA→CCT) | ybhH → | putative PrpF family isomerase |
RA | 800,488 | G→T | 88.6% | V510V (GTG→GTT) | ybhJ → | putative hydratase |
RA | 800,779 | G→T | 100% | E607D (GAG→GAT) | ybhJ → | putative hydratase |
RA | 805,693 | A→C | 11.1% | E298D (GAA→GAC) | bioB → | biotin synthase |
RA | 813,820 | G→T | 10.0% | E104* (GAA→TAA) | moaB → | inactive molybdopterin adenylyltransferase |
RA | 816,152 | C→A | 16.4% | intergenic (+108/‑97) | ybhL → / → ybhM | UPF0005 family inner membrane protein/UPF0005 family inner membrane protein |
RA | 816,292 | A→T | 25.7% | H15L (CAC→CTC) | ybhM → | UPF0005 family inner membrane protein |
RA | 818,362 | G→T | 21.3% | G278G (GGC→GGA) | clsB ← | cardiolipin synthase 2 |
RA | 819,862 | G→T | 12.2% | P31Q (CCG→CAG) | ybhP ← | endo/exonuclease/phosphatase family protein |
RA | 828,374 | G→T | 90.9% | V11V (GTC→GTA) | ybiA ← | DUF1768 family protein |
RA | 829,223 | G→A | 7.8% | S233N (AGC→AAC) | dinG → | ATP‑dependent DNA helicase |
RA | 832,445 | G→T | 87.6% | P213P (CCG→CCT) | ybiC → | putative dehydrogenase |
RA | 839,791 | C→A | 5.5% | A382A (GCG→GCT) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
RA | 843,299 | C→A | 87.5% | W54C (TGG→TGT) | glnH ← | glutamine transporter subunit |
RA | 851,782 | A→T | 24.3% | K122* (AAA→TAA) | ybiT → | putative transporter subunit of ABC superfamily: ATP‑binding component |
RA | 853,014 | G→T | 5.9% | intergenic (+3/+238) | ybiT → / ← ybiU | putative transporter subunit of ABC superfamily: ATP‑binding component/DUF1479 family protein |
RA | 858,992 | C→T | 9.4% | intergenic (‑25/‑106) | ybiY ← / → fsaA | putative pyruvate formate lyase activating enzyme/fructose‑6‑phosphate aldolase 1 |
RA | 861,323 | T→A | 16.4% | S166S (TCA→TCT) | moeA ← | molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein |
RA | 863,481 | T→G | 15.2% | L169R (CTC→CGC) | gsiA → | glutathione transporter ATP‑binding protein, ABC superfamily |
RA | 863,745 | T→A | 30.2% | F257Y (TTT→TAT) | gsiA → | glutathione transporter ATP‑binding protein, ABC superfamily |
RA | 868,473 | A→C | 17.9% | I13I (ATA→ATC) | yliE → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 868,897 | G→T | 27.7% | D155Y (GAC→TAC) | yliE → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 876,447 | G→A | 93.4% | D89N (GAT→AAT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
RA | 876,738 | G→T | 7.9% | D186Y (GAT→TAT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
RA | 877,482 | C→A | 27.8% | D237Y (GAT→TAT) | deoR ← | deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
RA | 879,085 | G→T | 100% | intergenic (‑241/‑44) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein |
RA | 884,152 | G→T | 18.0% | S375* (TCG→TAG) | ybjL ← | putative transporter |
RA | 889,044 | G→T | 24.8% | intergenic (+155/‑196) | ybjN → / → potF | negative regulator of motility; multicopy suppressor of coaA(Ts)/putrescine transporter subunit: periplasmic‑binding component of ABC superfamily |
RA | 899,961 | T→A | 16.5% | intergenic (‑38/‑88) | ybjP ← / → ybjQ | lipoprotein/UPF0145 family protein |
RA | 907,596 | G→T | 35.5% | P4Q (CCA→CAA) | hcr ← | HCP oxidoreductase, NADH‑dependent |
RA | 925,160 | G→T | 89.4% | S420* (TCA→TAA) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 925,355 | A→T | 34.6% | L355Q (CTG→CAG) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 925,957 | A→T | 29.2% | I154I (ATT→ATA) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 943,573 | G→T | 84.6% | A297S (GCC→TCC) | ycaM → | putative transporter |
RA | 949,634 | C→T | 6.6% | V97I (GTT→ATT) | focA ← | formate channel |
RA | 949,653 | A→G | 5.9% | F90F (TTT→TTC) | focA ← | formate channel |
RA | 955,568 | A→T | 46.3% | intergenic (+17/‑152) | aroA → / → ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
RA | 958,417 | A→T | 12.1% | N323Y (AAC→TAC) | rpsA → | 30S ribosomal subunit protein S1 |
RA | 963,256 | G→A | 28.8% | D394N (GAT→AAT) | msbA → | fused lipid transporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 968,415 | G→T | 100% | S148* (TCG→TAG) | ycbC ← | DUF218 superfamily protein |
RA | 976,873 | C→A | 26.8% | A124E (GCG→GAG) | ldtD → | murein L,D‑transpeptidase |
RA | 991,460 | A→T | 16.3% | L314Q (CTG→CAG) | ssuA ← | aliphatic sulfonate binding protein, SsuABC ABC transporter |
RA | 992,050 | T→A | 5.7% | E117D (GAA→GAT) | ssuA ← | aliphatic sulfonate binding protein, SsuABC ABC transporter |
RA | 997,965 | G→T | 37.8% | D235Y (GAT→TAT) | elfG → | putative fimbrial‑like adhesin protein |
RA | 999,165 | A→C | 8.4% | T91P (ACC→CCC) | ycbV → | putative fimbrial‑like adhesin protein |
RA | 1,022,182 | G→T | 7.4% | P97Q (CCG→CAG) | mgsA ← | methylglyoxal synthase |
RA | 1,024,703 | G→T | 40.6% | G241G (GGC→GGA) | rlmI ← | 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent |
RA | 1,048,588 | C→A | 7.2% | P77P (CCG→CCT) | yccM ← | putative 4Fe‑4S membrane protein |
RA | 1,048,928 | C→A | 89.8% | E903* (GAA→TAA) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,049,407 | G→T | 90.0% | T743K (ACG→AAG) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,073,243 | C→A | 25.9% | G366C (GGT→TGT) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
RA | 1,073,863 | G→T | 22.4% | S159* (TCG→TAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
RA | 1,077,911 | A→C | 93.7% | K71N (AAA→AAC) | efeO → | inactive ferrous ion transporter EfeUOB |
RA | 1,080,567 | T→A | 5.5% | C40* (TGT→TGA) | phoH → | ATP‑binding protein; putative PhoH family P‑loop ATPase |
RA | 1,083,419 | C→T | 6.4% | S632N (AGC→AAC) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
RA | 1,083,443 | G→T | 56.6% | S624* (TCG→TAG) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
RA | 1,084,103 | A→T | 85.7% | L404* (TTA→TAA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
RA | 1,099,378 | A→C | 6.1% | intergenic (‑726/‑29) | csgD ← / → csgB | csgBAC operon transcriptional regulator/curlin nucleator protein, minor subunit in curli complex |
RA | 1,116,964 | A→G | 93.6% | intergenic (‑21/+53) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydro‑orotase |
RA | 1,121,219 | G→T | 9.3% | E68* (GAA→TAA) | rimJ → | ribosomal‑protein‑S5‑alanine N‑acetyltransferase |
RA | 1,122,582 | G→T | 6.3% | V107V (GTG→GTT) | yceM → | putative oxidoreductase |
RA | 1,132,494 | T→A | 25.3% | I255I (ATT→ATA) | flgI → | putative flagellar basal body protein |
RA | 1,141,894 | G→T | 5.1% | A53E (GCG→GAG) | yceF ← | Maf‑like protein |
RA | 1,147,164 | G→A | 8.7% | D32N (GAC→AAC) | acpP → | acyl carrier protein (ACP) |
RA | 1,151,750 | G→T | 100% | R178L (CGC→CTC) | holB → | DNA polymerase III, delta prime subunit |
RA | 1,152,278 | G→T | 92.2% | E16* (GAA→TAA) | ycfH → | putative DNase |
RA | 1,153,110 | T→A | 7.5% | intergenic (+80/‑215) | ycfH → / → ptsG | putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component |
RA | 1,164,454 | G→A | 13.3% | intergenic (‑166/‑75) | ycfQ ← / → bhsA | repressor for bhsA(ycfR)/biofilm, cell surface and signaling protein |
RA | 1,165,425 | C→A | 5.4% | D136Y (GAC→TAC) | ldtC ← | L,D‑transpeptidase linking Lpp to murein |
RA | 1,173,073 | T→A | 21.8% | F100I (TTC→ATC) | lolE → | lipoprotein‑releasing system transmembrane protein |
RA | 1,175,193 | A→T | 23.7% | E36V (GAA→GTA) | cobB → | deacetylase of acs and cheY, chemotaxis regulator |
RA | 1,181,431 | G→T | 12.8% | E44D (GAG→GAT) | pepT → | peptidase T |
RA | 1,191,676 | C→T | 37.5% | H366H (CAC→CAT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,688 | C→T | 36.0% | T370T (ACC→ACT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,701 | T→C | 34.5% | L375L (TTA→CTA) ‡ | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,703 | A→G | 34.7% | L375L (TTA→TTG) ‡ | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,733 | C→T | 22.5% | N385N (AAC→AAT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,736 | G→C | 22.5% | A386A (GCG→GCC) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,739 | A→G | 21.0% | K387K (AAA→AAG) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,748 | C→T | 12.6% | T390T (ACC→ACT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,760 | G→A | 9.7% | E394E (GAG→GAA) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,193,516 | T→G | 24.6% | N60H (AAT→CAT) | ymfE ← | e14 prophage; putative inner membrane protein |
RA | 1,193,873 | G→T | 85.6% | intergenic (‑180/‑278) | ymfE ← / → lit | e14 prophage; putative inner membrane protein/e14 prophage; cell death peptidase, inhibitor of T4 late gene expression |
RA | 1,194,194 | C→A | 21.6% | S15* (TCA→TAA) | lit → | e14 prophage; cell death peptidase, inhibitor of T4 late gene expression |
RA | 1,197,650 | T→C | 10.4% | intergenic (‑110/+65) | ymfJ ← / ← cohE | e14 prophage; uncharacterized protein/e14 prophage; repressor protein phage e14 |
RA | 1,198,429 | C→T | 7.2% | intergenic (‑40/‑51) | cohE ← / → croE | e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator |
RA | 1,204,284 | C→A | 47.2% | D98Y (GAT→TAT) | tfaE ← | e14 prophage; putative tail fiber assembly protein |
RA | 1,204,620 | C→A | 13.6% | pseudogene (456/501 nt) | stfE ← | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related |
RA | 1,206,749 | A→T | 5.6% | intergenic (+114/‑120) | mcrA → / → icdC | putative 5‑methylcytosine/5‑hydroxymethylcytosine‑specific restriction nuclease; 5‑methylcytosine DNA binding protein; e14 prophage gene/pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion |
RA | 1,211,169 | C→A | 88.3% | intergenic (‑238/‑76) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
RA | 1,219,533 | A→G | 92.3% | intergenic (+170/+202) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
RA | 1,220,996 | G→T | 100% | R181R (CGG→AGG) | minC ← | cell division inhibitor |
RA | 1,224,292 | G→A | 93.2% | D8N (GAT→AAT) | ycgN → | UPF0153 family cysteine cluster protein |
RA | 1,226,292 | T→A | 91.0% | C24S (TGT→AGT) | umuD → | DNA polymerase V, subunit D |
RA | 1,226,819 | G→T | 8.0% | D60Y (GAT→TAT) | umuC → | DNA polymerase V, subunit C |
RA | 1,227,613 | C→A | 24.4% | N324K (AAC→AAA) | umuC → | DNA polymerase V, subunit C |
RA | 1,228,033 | C→A | 8.5% | A152S (GCT→TCT) | dsbB ← | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
RA | 1,228,591 | G→T | 93.2% | intergenic (‑105/+41) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
RA | 1,245,682 | T→G | 13.4% | T205P (ACC→CCC) | dhaK ← | dihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit |
RA | 1,246,435 | T→A | 5.0% | intergenic (‑141/‑87) | dhaK ← / → dhaR | dihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit/dhaKLM operon transcription activator |
RA | 1,251,120 | T→A | 25.7% | T97S (ACC→TCC) | ycgV ← | putative adhesin |
RA | 1,266,292 | G→T | 5.3% | I338I (ATC→ATA) | chaA ← | calcium/sodium:proton antiporter |
RA | 1,274,399 | G→T | 8.1% | A329A (GCG→GCT) | narK → | nitrate/nitrite transporter |
RA | 1,276,723 | C→A | 6.1% | T468T (ACC→ACA) | narG → | nitrate reductase 1, alpha subunit |
RA | 1,277,786 | G→A | 93.0% | D823N (GAC→AAC) | narG → | nitrate reductase 1, alpha subunit |
RA | 1,282,326 | C→A | 5.1% | intergenic (+344/+196) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
RA | 1,282,421 | A→T | 8.4% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
RA | 1,284,124 | C→A | 5.6% | intergenic (‑44/+6) | purU ← / ← ychJ | formyltetrahydrofolate hydrolase/UPF0225 family protein |
RA | 1,288,669 | A→T | 41.4% | intergenic (‑291/‑314) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
RA | 1,299,742 | C→A | 5.0% | A244A (GCC→GCA) | oppD → | oligopeptide transporter subunit |
RA | 1,300,115 | A→T | 12.0% | Q32L (CAA→CTA) | oppF → | oligopeptide transporter subunit |
RA | 1,301,604 | A→T | 17.0% | I433I (ATT→ATA) | clsA ← | cardiolipin synthase 1 |
RA | 1,322,140 | T→A | 93.7% | T159S (ACG→TCG) | btuR ← | cob(I)yrinic acid a,c‑diamide adenosyltransferase |
RA | 1,330,955 | G→T | 37.0% | D290Y (GAT→TAT) | acnA → | aconitate hydratase 1 |
RA | 1,334,048 | G→T | 28.6% | E154D (GAG→GAT) | pgpB → | phosphatidylglycerophosphatase B |
RA | 1,337,533 | G→T | 92.1% | A18E (GCA→GAA) | osmB ← | lipoprotein |
RA | 1,340,901 | A→T | 25.7% | S33S (TCT→TCA) | gmr ← | cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability |
RA | 1,346,661 | T→A | 6.1% | P77P (CCA→CCT) | sapF ← | antimicrobial peptide transport ABC system ATP‑binding protein |
RA | 1,350,579 | C→A | 7.5% | L263L (CTG→CTT) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
RA | 1,351,351 | G→T | 7.3% | S6* (TCG→TAG) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
RA | 1,365,283 | G→T | 100% | E271* (GAG→TAG) | ycjM → | alpha amylase catalytic domain family protein |
RA | 1,369,694 | G→A | 15.9% | D159N (GAT→AAT) | ycjQ → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
JC JC | 1,376,043 | IS5 (–) +4 bp | 100% | pseudogene (10‑13/126 nt) | ycjV → | pseudogene; putative ATP‑binding component of a transport system |
RA | 1,377,394 | C→T | 94.7% | A275A (GCG→GCA) | ycjW ← | LacI family putative transcriptional repressor |
RA | 1,383,189 | G→T | 5.7% | M1M (ATG→ATT) † | ycjG → | L‑Ala‑D/L‑Glu epimerase |
RA | 1,386,008 | G→T | 93.8% | Q35K (CAG→AAG) | ycjY ← | S9 homolog non‑peptidase family protein |
RA | 1,388,406 | G→T | 94.5% | R308L (CGC→CTC) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
RA | 1,396,370 | G→T | 12.9% | N381K (AAC→AAA) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
RA | 1,417,454 | C→A | 30.6% | pseudogene (497/500 nt) | ydaW → | Rac prophage; pseudogene, DNA‑binding protein family;Phage or Prophage Related |
RA | 1,419,486 | G→T | 7.1% | W483L (TGG→TTG) | trkG → | Rac prophage; potassium transporter subunit |
RA | 1,424,234 | C→A | 89.7% | S310* (TCA→TAA) | stfR → | Rac prophage; putative tail fiber protein |
JC JC | 1,428,894 | IS2 (–) +5 bp | 89.6% | intergenic (‑413/+317) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
RA | 1,429,000 | C→A | 15.7% | intergenic (‑519/+215) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
RA | 1,439,518 | C→A | 89.9% | S737S (TCC→TCA) | ydbH → | putative membrane‑anchored protein, function unknown |
RA | 1,441,854 | C→A | 8.3% | R27S (CGT→AGT) | feaB → | phenylacetaldehyde dehydrogenase |
RA | 1,443,093 | C→A | 28.8% | L440I (CTC→ATC) | feaB → | phenylacetaldehyde dehydrogenase |
RA | 1,443,196 | A→T | 30.1% | Q474L (CAG→CTG) | feaB → | phenylacetaldehyde dehydrogenase |
RA | 1,443,900 | C→A | 6.3% | E569D (GAG→GAT) | tynA ← | tyramine oxidase, copper‑requiring |
RA | 1,444,739 | G→A | 29.7% | P290S (CCC→TCC) | tynA ← | tyramine oxidase, copper‑requiring |
RA | 1,445,781 | G→T | 10.5% | intergenic (‑175/+73) | tynA ← / ← paaZ | tyramine oxidase, copper‑requiring/fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
RA | 1,448,131 | G→A | 5.4% | intergenic (‑232/‑53) | paaZ ← / → paaA | fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase/ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
RA | 1,448,418 | C→T | 11.6% | L79F (CTC→TTC) | paaA → | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
RA | 1,448,466 | C→A | 19.4% | Q95K (CAA→AAA) | paaA → | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
RA | 1,451,422 | A→T | 43.6% | T246S (ACG→TCG) | paaE → | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
RA | 1,454,724 | G→T | 91.1% | G472C (GGT→TGT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
RA | 1,460,458 | T→C | 5.8% | pseudogene (810/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,460,752 | C→T | 5.5% | pseudogene (1104/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,460,761 | A→G | 5.9% | pseudogene (1113/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,460,896 | C→T | 6.0% | pseudogene (1248/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,468,378 | G→T | 7.1% | intergenic (+108/‑100) | ydbA → / → ydbC | pseudogene, autotransporter homolog; interrupted by IS2 and IS30/putative NAD(P)‑binding oxidoreductase |
RA | 1,469,389 | C→A | 5.0% | intergenic (+51/‑12) | ydbC → / → ydbD | putative NAD(P)‑binding oxidoreductase/PF10971 family putative periplasmic methylglyoxal resistance protein |
RA | 1,477,570 | G→A | 5.3% | D85N (GAC→AAC) | hrpA → | putative ATP‑dependent helicase |
RA | 1,488,630 | C→A | 24.3% | T233T (ACG→ACT) | ydcI ← | putative DNA‑binding transcriptional regulator |
RA | 1,511,697 | G→T | 6.4% | A18S (GCA→TCA) | ydcX → | DUF2566 family protein |
RA | 1,519,349 | T→A | 100% | K297* (AAA→TAA) | ansP ← | L‑asparagine transporter |
RA | 1,521,126 | G→A | 5.5% | intergenic (+5/‑71) | yncG → / → yncH | glutathione S‑transferase homolog/IPR020099 family protein |
RA | 1,529,506 | C→T | 25.9% | G204S (GGC→AGC) | yddE ← | PhzC‑PhzF family protein |
RA | 1,533,556 | G→T | 23.0% | H1098N (CAC→AAC) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
RA | 1,533,940 | C→T | 13.4% | A970T (GCG→ACG) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
RA | 1,539,808 | G→T | 9.9% | pseudogene (164/951 nt) | yddK ← | pseudogene, leucine‑rich protein; putative glycoportein |
RA | 1,543,233 | G→T | 9.0% | D526Y (GAC→TAC) | fdnG → | formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
RA | 1,548,144 | G→T | 94.3% | intergenic (‑49/+85) | adhP ← / ← maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
RA | 1,552,629 | C→A | 43.6% | D216Y (GAT→TAT) | ddpD ← | D,D‑dipeptide permease system, ATP‑binding component |
RA | 1,563,276 | G→T | 93.6% | H491N (CAC→AAC) | gadC ← | glutamate:gamma‑aminobutyric acid antiporter |
RA | 1,565,497 | G→A | 87.1% | S269L (TCG→TTG) | gadB ← | glutamate decarboxylase B, PLP‑dependent |
RA | 1,566,392 | A→T | 30.0% | intergenic (‑90/+272) | gadB ← / ← pqqL | glutamate decarboxylase B, PLP‑dependent/putative periplasmic M16 family zinc metalloendopeptidase |
RA | 1,575,339 | G→T | 90.6% | F481L (TTC→TTA) | ydeN ← | putative Ser‑type periplasmic non‑aryl sulfatase |
RA | 1,586,871 | G→T | 24.8% | intergenic (‑172/+51) | hipB ← / ← yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
RA | 1,593,189 | T→G | 8.0% | A426A (GCA→GCC) | lsrK ← | autoinducer‑2 (AI‑2) kinase |
RA | 1,601,793 | C→A | 6.4% | S64Y (TCT→TAT) | tam → | trans‑aconitate methyltransferase |
RA | 1,602,131 | G→T | 24.8% | D177Y (GAT→TAT) | tam → | trans‑aconitate methyltransferase |
RA | 1,603,440 | G→A | 88.7% | intergenic (‑161/+46) | yneE ← / ← uxaB | bestrophin family putative inner membrane protein/altronate oxidoreductase, NAD‑dependent |
RA | 1,604,418 | C→A | 11.7% | D174Y (GAC→TAC) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
RA | 1,610,766 | C→T | 7.7% | S249S (AGC→AGT) | yneK → | uncharacterized protein |
RA | 1,611,158 | G→T | 6.5% | intergenic (+23/‑127) | yneK → / → ydeA | uncharacterized protein/arabinose efflux transporter, arabinose‑inducible |
RA | 1,615,440 | G→T | 10.2% | intergenic (‑46/‑149) | eamA ← / → ydeE | cysteine and O‑acetyl‑L‑serine efflux system/putative transporter |
RA | 1,620,961 | T→G | 87.2% | Q226P (CAA→CCA) | dcp ← | dipeptidyl carboxypeptidase II |
RA | 1,623,050 | G→T | 10.0% | D148Y (GAC→TAC) | rspR → | transcriptional repressor for rspAB |
RA | 1,624,474 | T→A | 5.9% | T233S (ACG→TCG) | ydfI ← | putative NAD‑dependent D‑mannonate oxidoreductase |
RA | 1,625,116 | T→A | 12.1% | N19Y (AAC→TAC) | ydfI ← | putative NAD‑dependent D‑mannonate oxidoreductase |
RA | 1,628,207 | G→A | 92.0% | G110E (GGA→GAA) | pinQ → | Qin prophage; putative site‑specific recombinase |
RA | 1,646,412 | A→T | 12.5% | pseudogene (605/1158 nt) | intQ → | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
RA | 1,647,785 | T→C | 9.9% | K130E (AAA→GAA) | rspB ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
RA | 1,648,870 | A→T | 12.7% | W177R (TGG→AGG) | rspA ← | bifunctional D‑altronate/D‑mannonate dehydratase |
RA | 1,656,349 | G→T | 7.2% | D513Y (GAT→TAT) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
RA | 1,661,763 | C→A | 100% | P353P (CCG→CCT) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
RA | 1,670,193 | G→T | 5.8% | A142E (GCG→GAG) | pntB ← | pyridine nucleotide transhydrogenase, beta subunit |
RA | 1,677,054 | G→T | 5.1% | L213L (CTG→CTT) | rstA → | response regulator of RstAB two‑component system, low Mg‑responsive via PhoQP |
RA | 1,689,180 | T→G | 34.2% | E383D (GAA→GAC) | uidA ← | beta‑D‑glucuronidase |
RA | 1,690,981 | G→T | 19.1% | A110E (GCG→GAG) | uidR ← | transcriptional repressor |
RA | 1,692,573 | C→A | 38.5% | D289Y (GAT→TAT) | malI ← | transcriptional repressor of Mal regulon |
RA | 1,694,085 | C→T | 5.8% | V158V (GTC→GTT) | malX → | fused maltose and glucose‑specific PTS enzymes: IIB component, IIC component |
RA | 1,696,612 | A→T | 93.9% | E41D (GAA→GAT) | add → | adenosine deaminase |
RA | 1,699,862 | T→A | 38.0% | L119* (TTG→TAG) | ydgK → | DUF2569 family inner membrane protein |
RA | 1,702,966 | T→A | 8.3% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,062 | T→A | 8.9% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,071 | A→T | 8.2% | A632A (GCA→GCT) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,711,397 | C→T | 91.6% | R28Q (CGA→CAA) | tyrS ← | tyrosyl‑tRNA synthetase |
RA | 1,717,253 | C→A | 6.6% | T292T (ACC→ACA) | ydhK → | putative efflux protein (PET) component of YdhJK efflux pump |
RA | 1,721,600 | G→T | 5.6% | D229Y (GAT→TAT) | nemA → | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme |
RA | 1,723,809 | G→T | 42.3% | E156* (GAA→TAA) | lhr → | putative ATP‑dependent helicase |
RA | 1,724,534 | G→T | 7.8% | V397V (GTG→GTT) | lhr → | putative ATP‑dependent helicase |
RA | 1,725,272 | G→T | 25.1% | A643A (GCG→GCT) | lhr → | putative ATP‑dependent helicase |
RA | 1,726,437 | C→A | 9.3% | L1032I (CTC→ATC) | lhr → | putative ATP‑dependent helicase |
RA | 1,731,038 | C→A | 6.9% | V170V (GTG→GTT) | ydhP ← | putative transporter |
RA | 1,747,034 | C→A | 21.1% | D352Y (GAT→TAT) | ydhV ← | putative oxidoreductase subunit |
RA | 1,752,893 | T→A | 18.5% | P30P (CCA→CCT) | ldtE ← | murein L,D‑transpeptidase |
RA | 1,754,950 | T→A | 86.6% | I367F (ATT→TTT) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
RA | 1,764,150 | G→T | 42.0% | D274Y (GAT→TAT) | ydiK → | UPF0118 family inner membrane protein |
RA | 1,766,617 | A→T | 21.0% | intergenic (+75/‑152) | ydiM → / → ydiN | MFS superfamily sugar transport 1 family protein/MFS transporter superfamily protein |
RA | 1,767,963 | C→A | 21.5% | P399T (CCT→ACT) | ydiN → | MFS transporter superfamily protein |
RA | 1,770,281 | T→A | 94.0% | D146E (GAT→GAA) | ydiF → | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
RA | 1,777,451 | C→A | 39.9% | A55E (GCG→GAG) | fadK → | short chain acyl‑CoA synthetase, anaerobic |
RA | 1,781,457 | G→A | 7.7% | intergenic (‑88/‑245) | ppsA ← / → ppsR | phosphoenolpyruvate synthase/bifunctional regulatory protein: PEP synthase kinase and PEP synthase pyrophosphorylase |
RA | 1,788,981 | A→T | 6.3% | S143R (AGT→AGA) | btuC ← | vitamin B12 transporter subunit: membrane component of ABC superfamily |
RA | 1,791,509 | C→A | 26.4% | P231P (CCG→CCT) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
RA | 1,795,267 | A→T | 33.3% | F521I (TTC→ATC) | thrS ← | threonyl‑tRNA synthetase |
RA | 1,796,428 | C→A | 6.1% | V134F (GTC→TTC) | thrS ← | threonyl‑tRNA synthetase |
RA | 1,797,761 | G→T | 5.1% | pseudogene (411/426 nt) | arpB → | pseudogene, ankyrin repeats |
RA | 1,798,045 | G→T | 5.6% | pseudogene (271/1476 nt) | arpB → | pseudogene, ankyrin repeats |
RA | 1,798,112 | C→A | 8.6% | pseudogene (338/1476 nt) | arpB → | pseudogene, ankyrin repeats |
RA | 1,798,834 | G→A | 27.6% | pseudogene (1060/1476 nt) | arpB → | pseudogene, ankyrin repeats |
RA | 1,800,416 | C→T | 12.5% | intergenic (‑76/‑211) | ydiY ← / → pfkB | acid‑inducible putative outer membrane protein/6‑phosphofructokinase II |
RA | 1,801,107 | A→T | 10.7% | I161F (ATC→TTC) | pfkB → | 6‑phosphofructokinase II |
RA | 1,802,047 | G→A | 100% | intergenic (+100/‑6) | ydiZ → / → yniA | uncharacterized protein/fructosamine kinase family protein |
RA | 1,803,109 | C→T | 46.4% | A128T (GCC→ACC) | yniB ← | putative inner membrane protein |
RA | 1,805,071 | C→A | 14.9% | intergenic (+13/‑120) | ydjM → / → ydjN | inner membrane protein regulated by LexA/putative transporter |
RA | 1,811,203 | G→A | 9.4% | L64F (CTT→TTT) | chbG ← | chito‑oligosaccharide deacetylase |
RA | 1,813,263 | C→A | 33.9% | E148* (GAG→TAG) | chbR ← | repressor of chb operon for N,N'‑diacetylchitobiose utilization |
RA | 1,821,696 | A→T | 40.1% | L274Q (CTG→CAG) | astB ← | succinylarginine dihydrolase |
RA | 1,825,763 | C→A | 90.9% | A159A (GCG→GCT) | astC ← | succinylornithine transaminase, PLP‑dependent |
RA | 1,832,413 | C→A | 92.8% | L315L (CTC→CTA) | ynjC → | inner membrane putative ABC superfamily transporter permease |
RA | 1,833,730 | C→A | 100% | R3S (CGT→AGT) | ynjE → | molybdopterin synthase sulfurtransferase |
RA | 1,848,031 | C→T | 7.2% | G69D (GGT→GAT) | ydjE ← | putative transporter |
RA | 1,850,797 | C→A | 11.6% | R130L (CGG→CTG) | ydjH ← | putative kinase |
RA | 1,850,880 | C→A | 30.3% | V102V (GTG→GTT) | ydjH ← | putative kinase |
RA | 1,862,404 | G→T | 29.9% | E414* (GAA→TAA) | yeaG → | protein kinase, endogenous substrate unidentified; autokinase |
RA | 1,865,422 | C→A | 94.1% | R261R (CGA→AGA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,867,537 | C→A | 11.3% | R414S (CGT→AGT) | yeaJ → | putative diguanylate cyclase |
RA | 1,868,749 | A→C | 22.8% | E47D (GAA→GAC) | yeaL → | UPF0756 family putative inner membrane protein |
RA | 1,871,563 | C→A | 8.3% | R76L (CGG→CTG) | yoaF ← | DUF333 family outer membrane lipoprotein |
RA | 1,872,520 | G→T | 100% | P183P (CCG→CCT) | yeaP → | diguanylate cyclase |
RA | 1,873,569 | C→A | 5.8% | intergenic (‑57/+91) | yeaQ ← / ← yoaG | UPF0410 family protein/uncharacterized protein |
RA | 1,884,367 | T→A | 7.9% | V141V (GTA→GTT) | yeaY ← | Slp family lipoprotein, RpoE‑regulated |
RA | 1,892,211 | C→A | 5.9% | G341G (GGC→GGA) | sdaA → | L‑serine dehydratase 1 |
RA | 1,899,495 | G→A | 6.5% | K146K (AAG→AAA) | yobD → | UPF0266 family inner membrane protein |
RA | 1,902,115 | C→A | 7.4% | intergenic (‑267/+403) | yobF ← / ← yebO | DUF2527 family heat‑induced protein/putative inner membrane protein |
RA | 1,905,599 | C→A | 5.4% | A356E (GCG→GAG) | yebQ → | putative transporter |
RA | 1,909,342 | T→A | 100% | E150D (GAA→GAT) | proQ ← | RNA chaperone, putative ProP translation regulator |
RA | 1,932,701 | C→A | 6.3% | Q266K (CAG→AAG) | pykA → | pyruvate kinase II |
RA | 1,942,066 | G→T | 30.6% | H115N (CAT→AAT) | yebC ← | UPF0082 family protein |
RA | 1,943,414 | C→A | 7.4% | D456Y (GAT→TAT) | aspS ← | aspartyl‑tRNA synthetase |
RA | 1,944,177 | C→A | 94.8% | L201L (CTG→CTT) | aspS ← | aspartyl‑tRNA synthetase |
RA | 1,948,050 | C→A | 17.4% | L118I (CTT→ATT) | cmoB → | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
RA | 1,959,915 | C→A | 38.4% | P178P (CCG→CCT) | flhB ← | flagellin export apparatus, substrate specificity protein |
RA | 1,969,291 | G→T | 100% | I97I (ATC→ATA) | cheA ← | fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
RA | 1,973,690 | A→G | 9.4% | A468A (GCT→GCC) | otsA ← | trehalose‑6‑phosphate synthase |
RA | 1,974,836 | C→T | 7.6% | W86* (TGG→TGA) | otsA ← | trehalose‑6‑phosphate synthase |
RA | 1,975,265 | C→A | 19.0% | D202Y (GAT→TAT) | otsB ← | trehalose‑6‑phosphate phosphatase, biosynthetic |
RA | 1,984,987 | C→A | 34.8% | T38T (ACG→ACT) | yecA ← | UPF0149 family protein |
RA | 1,985,366 | G→T | 25.5% | noncoding (17/87 nt) | leuZ ← | tRNA‑Leu |
RA | 1,986,289 | T→A | 92.1% | N4Y (AAT→TAT) | pgsA ← | phosphatidylglycerophosphate synthetase |
RA | 1,991,843 | G→A | 26.5% | L40F (CTC→TTC) | yecS ← | ABC family putative inner membrane permease |
RA | 1,997,314 | G→T | 86.2% | intergenic (‑227/‑39) | fliC ← / → fliD | flagellar filament structural protein (flagellin)/flagellar filament capping protein |
RA | 1,999,098 | C→A | 5.2% | V105V (GTC→GTA) | fliS → | flagellar protein potentiates polymerization |
RA | 1,999,632 | G→T | 89.8% | intergenic (+73/‑5) | fliT → / → amyA | putative flagellar synthesis and assembly chaperone/cytoplasmic alpha‑amylase |
RA | 2,007,547 | C→A | 33.1% | R280S (CGC→AGC) | fliF → | flagellar basal‑body MS‑ring and collar protein |
RA | 2,020,166 | C→A | 93.3% | D445Y (GAC→TAC) | yedQ ← | putative membrane‑anchored diguanylate cyclase |
RA | 2,020,985 | C→T | 7.8% | E172K (GAA→AAA) | yedQ ← | putative membrane‑anchored diguanylate cyclase |
RA | 2,030,998 | C→A | 19.8% | P212P (CCG→CCT) | yedV ← | putative sensory kinase in two‑component regulatory system with YedW |
RA | 2,034,714 | C→T | 5.7% | intergenic (+115/‑142) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
RA | 2,035,090 | C→A | 90.0% | Q79K (CAG→AAG) | zinT → | zinc and cadmium binding protein, periplasmic |
RA | 2,038,804 | C→A | 8.4% | P129Q (CCG→CAG) | yeeJ → | putative adhesin |
RA | 2,039,694 | C→T | 13.6% | R426C (CGC→TGC) | yeeJ → | putative adhesin |
RA | 2,040,800 | C→A | 26.1% | T794T (ACC→ACA) | yeeJ → | putative adhesin |
RA | 2,041,982 | A→T | 15.5% | S1188S (TCA→TCT) | yeeJ → | putative adhesin |
RA | 2,050,611 | C→T | 5.8% | G91G (GGC→GGT) | yeeN → | UPF0082 family protein |
RA | 2,053,397 | C→A | 6.7% | noncoding (66/76 nt) | asnU → | tRNA‑Asn |
RA | 2,066,503 | C→A | 7.8% | S495* (TCA→TAA) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
RA | 2,067,205 | G→A | 13.4% | G729D (GGC→GAC) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
RA | 2,067,399 | G→T | 7.9% | A794S (GCG→TCG) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
RA | 2,067,829 | C→A | 7.9% | S937* (TCA→TAA) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
RA | 2,074,680 | A→T | 91.4% | W22R (TGG→AGG) | sbmC ← | DNA gyrase inhibitor |
RA | 2,077,212 | A→T | 46.0% | N326Y (AAT→TAT) | sbcB → | exodeoxyribonuclease I; exonuclease I |
RA | 2,090,880 | C→A | 6.4% | L301L (CTG→CTT) | wzzB ← | regulator of length of O‑antigen component of lipopolysaccharide chains |
RA | 2,098,004 | G→T | 10.7% | H188N (CAT→AAT) | wbbJ ← | putative lipopolysaccharide biosynthesis O‑acetyl transferase |
RA | 2,098,995 | C→A | 94.2% | G182* (GGA→TGA) | wbbI ← | d‑Galf:alpha‑d‑Glc beta‑1,6‑galactofuranosyltransferase |
RA | 2,102,205 | C→A | 15.1% | V287V (GTG→GTT) | wzxB ← | putative polisoprenol‑linked O‑antigen transporter |
RA | 2,102,364 | T→C | 6.8% | I234M (ATA→ATG) | wzxB ← | putative polisoprenol‑linked O‑antigen transporter |
RA | 2,108,219:1 | +A | 100% | coding (1159/1395 nt) | wcaM ← | colanic acid biosynthesis protein |
RA | 2,110,346 | G→A | 45.3% | T88I (ACC→ATC) | wcaL ← | putative glycosyl transferase |
RA | 2,114,414 | C→A | 17.6% | V208F (GTC→TTC) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
RA | 2,114,911 | A→T | 93.9% | L42Q (CTG→CAG) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
RA | 2,115,361 | C→A | 29.9% | R367L (CGC→CTC) | cpsG ← | phosphomannomutase |
RA | 2,135,016 | C→A | 24.8% | V26V (GTG→GTT) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
RA | 2,139,910 | G→T | 93.5% | R1055L (CGA→CTA) | yegE → | putative diguanylate cyclase |
RA | 2,142,983 | C→A | 7.6% | R495L (CGC→CTC) | yegI ← | protein kinase‑related putative non‑specific DNA‑binding protein |
RA | 2,144,474 | C→A | 94.4% | intergenic (‑8/‑192) | yegI ← / → yegJ | protein kinase‑related putative non‑specific DNA‑binding protein/uncharacterized protein |
RA | 2,146,030 | T→A | 10.1% | S194C (AGT→TGT) | yegL ← | VMA domain protein |
RA | 2,148,615 | C→A | 20.1% | R373R (CGC→CGA) | mdtA → | multidrug efflux system, subunit A |
RA | 2,149,603 | A→T | 91.3% | E287V (GAA→GTA) | mdtB → | multidrug efflux system, subunit B |
RA | 2,154,431 | G→T | 8.7% | L855L (CTG→CTT) | mdtC → | multidrug efflux system, subunit C |
RA | 2,162,105 | T→A | 21.1% | intergenic (‑318/‑88) | yegR ← / → yegS | uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent |
RA | 2,163,087 | C→A | 29.2% | R299S (CGT→AGT) | yegS → | phosphatidylglycerol kinase, metal‑dependent |
RA | 2,168,487 | A→T | 42.3% | D14E (GAT→GAA) | gatA ← | galactitol‑specific enzyme IIA component of PTS |
RA | 2,168,795 | C→A | 93.3% | D336Y (GAT→TAT) | gatZ ← | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
RA | 2,174,132 | G→T | 6.8% | E187* (GAA→TAA) | yegU → | ADP‑ribosylglycohydrolase family protein |
RA | 2,175,796 | C→A | 6.1% | S155S (TCG→TCT) | yegW ← | putative DNA‑binding transcriptional regulator |
RA | 2,176,481 | G→T | 7.8% | A217D (GCT→GAT) | yegX ← | putative family 25 glycosyl hydrolase |
RA | 2,179,205 | G→T | 92.9% | A24E (GCG→GAG) | rcnR ← | transcriptional repressor of rcnA |
RA | 2,181,645 | A→G | 88.5% | N83N (AAT→AAC) | yehA ← | putative fimbrial‑like adhesin protein |
RA | 2,189,888 | C→A | 17.6% | intergenic (+76/‑65) | metG → / → yehH | methionyl‑tRNA synthetase/DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
RA | 2,191,496 | C→A | 28.8% | pseudogene (1544/2847 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
RA | 2,193,783 | C→A | 16.6% | A9E (GCG→GAG) | yehI → | DUF4132 domain‑containing protein |
RA | 2,194,695 | T→A | 100% | L313Q (CTA→CAA) | yehI → | DUF4132 domain‑containing protein |
RA | 2,195,449 | A→T | 94.6% | E564D (GAA→GAT) | yehI → | DUF4132 domain‑containing protein |
RA | 2,197,797 | A→T | 26.9% | intergenic (+29/‑278) | yehK → / → yehL | uncharacterized protein/putative ABC superfamily transporter ATP‑binding subunit |
RA | 2,204,432 | G→T | 6.3% | pseudogene (1854/2001 nt) | yehQ → | pseudogene |
RA | 2,209,162 | C→A | 42.3% | I9I (ATC→ATA) | yohO → | putative membrane protein |
RA | 2,210,858 | A→T | 5.1% | L10Q (CTG→CAG) | yehX ← | putative ABC superfamily transporter ATP‑binding subunit |
RA | 2,216,296 | C→A | 95.0% | I211I (ATC→ATA) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
RA | 2,220,503 | C→T | 28.2% | V83M (GTG→ATG) | yohF ← | putative oxidoreductase |
RA | 2,222,656 | A→C | 11.1% | intergenic (+112/+261) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
RA | 2,223,247 | C→T | 41.8% | W206* (TGG→TGA) | dusC ← | tRNA‑dihydrouridine synthase C |
RA | 2,224,212 | C→A | 11.6% | P37Q (CCG→CAG) | yohJ → | UPF0299 family inner membrane protein |
RA | 2,224,396 | T→A | 5.7% | V98V (GTT→GTA) | yohJ → | UPF0299 family inner membrane protein |
RA | 2,225,190 | C→T | 85.5% | G231G (GGC→GGT) | yohK → | LrgB family inner membrane protein |
RA | 2,225,260 | C→T | 18.2% | intergenic (+67/‑63) | yohK → / → cdd | LrgB family inner membrane protein/cytidine/deoxycytidine deaminase |
RA | 2,233,142 | A→T | 16.8% | V229E (GTG→GAG) | mglB ← | methyl‑galactoside transporter subunit |
RA | 2,237,098 | G→T | 94.2% | H12N (CAT→AAT) | folE ← | GTP cyclohydrolase I |
RA | 2,238,975 | T→A | 5.2% | Q425L (CAA→CTA) | cirA ← | colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter |
RA | 2,240,361 | C→A | 12.7% | intergenic (‑113/+181) | cirA ← / ← lysP | colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter |
RA | 2,240,937 | A→T | 5.1% | C359S (TGC→AGC) | lysP ← | lysine transporter |
RA | 2,243,089 | G→T | 15.1% | I3I (ATC→ATA) | yeiE ← | putative DNA‑binding transcriptional regulator |
RA | 2,259,689 | C→A | 16.9% | intergenic (+188/‑35) | yeiP → / → yeiQ | elongation factor P‑like protein/putative NAD‑dependent D‑mannonate oxidoreductase |
RA | 2,262,414 | C→A | 7.0% | H28N (CAT→AAT) | lpxT → | lipid A 1‑diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1‑phosphate phosphotransferase |
RA | 2,263,137 | C→A | 37.4% | intergenic (+91/‑321) | lpxT → / → mepS | lipid A 1‑diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1‑phosphate phosphotransferase/murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein |
RA | 2,263,171 | T→C | 12.1% | intergenic (+125/‑287) | lpxT → / → mepS | lipid A 1‑diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1‑phosphate phosphotransferase/murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein |
RA | 2,264,143 | G→A | 100% | intergenic (+119/‑62) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 2,270,338 | T→A | 32.6% | L187Q (CTG→CAG) | yejF → | microcin C transporter, ATP‑binding subunit; ABC family |
RA | 2,278,192 | T→G | 9.4% | L113R (CTC→CGC) | yejM → | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
RA | 2,278,791 | A→C | 9.2% | I313L (ATC→CTC) | yejM → | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
RA | 2,287,829 | C→A | 45.4% | S185S (TCG→TCT) | ccmF ← | heme lyase, CcmF subunit |
RA | 2,289,043 | C→A | 41.4% | W8L (TGG→TTG) | ccmD ← | cytochrome c biogenesis protein |
RA | 2,289,091 | C→A | 9.1% | E237* (GAA→TAA) | ccmC ← | heme exporter subunit |
RA | 2,289,374 | C→A | 100% | V142V (GTG→GTT) | ccmC ← | heme exporter subunit |
RA | 2,292,271 | A→T | 18.6% | C263S (TGC→AGC) | napH ← | ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) |
RA | 2,294,769 | C→A | 8.1% | P488P (CCG→CCT) | napA ← | nitrate reductase, periplasmic, large subunit |
RA | 2,298,128 | C→T | 7.5% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,298,159 | T→C | 10.9% | intergenic (+287/+428) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,298,393 | A→G | 5.1% | intergenic (+521/+194) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,298,492 | A→G | 6.0% | intergenic (+620/+95) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,303,070 | T→G | 92.8% | Q272P (CAG→CCG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
RA | 2,305,116 | C→A | 100% | intergenic (‑103/+9) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
RA | 2,305,135 | T→C | 94.9% | Y365C (TAC→TGC) | ompC ← | outer membrane porin protein C |
RA | 2,311,008 | T→A | 22.8% | H783L (CAC→CTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
RA | 2,313,924 | C→A | 30.8% | R135S (CGC→AGC) | atoS → | sensory histidine kinase in two‑component regulatory system with AtoC |
RA | 2,321,041 | G→T | 9.0% | F194L (TTC→TTA) | yfaP ← | DUF2135 family protein, putative host defense protein |
RA | 2,323,370 | G→T | 5.6% | pseudogene (4512/4605 nt) | yfaS ← | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
RA | 2,329,729 | G→T | 10.8% | A132E (GCG→GAG) | yfaA ← | DUF2138 family protein, putative host defense protein |
RA | 2,330,502 | C→A | 88.8% | D800Y (GAT→TAT) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
RA | 2,331,288 | C→T | 13.0% | D538N (GAT→AAT) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
RA | 2,344,807 | G→T | 6.2% | V349V (GTC→GTA) | glpT ← | sn‑glycerol‑3‑phosphate transporter |
RA | 2,345,023 | C→A | 6.3% | P277P (CCG→CCT) | glpT ← | sn‑glycerol‑3‑phosphate transporter |
RA | 2,346,251 | C→A | 6.0% | I42I (ATC→ATA) | glpA → | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)‑binding |
RA | 2,348,894 | T→A | 42.5% | V384E (GTG→GAG) | glpB → | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), membrane anchor subunit |
RA | 2,352,573 | C→A | 94.1% | P353P (CCG→CCT) | rhmT ← | putative L‑rhamnonate transporter |
RA | 2,352,965 | C→A | 5.0% | E223* (GAA→TAA) | rhmT ← | putative L‑rhamnonate transporter |
RA | 2,353,889 | C→A | 26.5% | V335V (GTG→GTT) | rhmD ← | L‑rhamnonate dehydratase |
RA | 2,359,673 | G→T | 92.8% | M89I (ATG→ATT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
RA | 2,360,045 | C→A | 11.0% | V213V (GTC→GTA) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
RA | 2,362,338 | T→A | 94.5% | L274Q (CTG→CAG) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
RA | 2,366,555 | T→G | 23.5% | F62C (TTT→TGT) | arnF → | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit |
RA | 2,370,361:1 | +G | 89.9% | coding (711/759 nt) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,370,837 | Δ1 bp | 26.7% | coding (235/759 nt) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,370,987 | C→A | 100% | E29* (GAA→TAA) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,373,129 | C→A | 21.7% | D332Y (GAT→TAT) | menF ← | isochorismate synthase 2 |
RA | 2,379,450 | C→T | 9.6% | P38S (CCT→TCT) | yfbL → | putative peptidase |
RA | 2,380,078 | C→T | 37.2% | S247F (TCT→TTT) | yfbL → | putative peptidase |
RA | 2,383,897 | C→A | 41.9% | R363L (CGC→CTC) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
RA | 2,387,701 | C→A | 6.2% | M275I (ATG→ATT) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
RA | 2,394,288 | C→A | 9.2% | L249L (CTG→CTT) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
RA | 2,395,041 | C→A | 12.2% | R164L (CGG→CTG) | nuoE ← | NADH:ubiquinone oxidoreductase, chain E |
RA | 2,395,151 | C→A | 9.3% | T127T (ACG→ACT) | nuoE ← | NADH:ubiquinone oxidoreductase, chain E |
RA | 2,399,210 | G→T | 94.8% | S304* (TCA→TAA) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
RA | 2,405,946 | T→G | 90.8% | Q43P (CAG→CCG) | yfbU ← | UPF0304 family protein |
RA | 2,407,678 | T→A | 23.7% | S244T (TCT→ACT) | ackA → | acetate kinase A and propionate kinase 2 |
RA | 2,412,205 | C→A | 43.5% | D151Y (GAT→TAT) | yfcD ← | putative NUDIX hydrolase |
RA | 2,416,101 | C→A | 95.0% | intergenic (+21/+27) | yfcH → / ← yfcI | putative NAD‑dependent nucleotide‑sugar epimerase/transposase_31 family protein |
RA | 2,417,358 | C→A | 7.9% | E211* (GAA→TAA) | hisP ← | histidine/lysine/arginine/ornithine transporter subunit |
RA | 2,422,841 | C→A | 91.2% | D293Y (GAT→TAT) | purF ← | amidophosphoribosyltransferase |
RA | 2,424,074 | C→T | 93.8% | D57N (GAC→AAC) | cvpA ← | colicin V production membrane protein |
RA | 2,426,731 | G→T | 21.0% | I225I (ATC→ATA) | accD ← | acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
RA | 2,434,701 | C→A | 5.8% | A128A (GCG→GCT) | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
RA | 2,442,770 | A→C | 24.8% | D253E (GAT→GAG) | yfcO ← | DUF2544 family putative outer membrane protein |
RA | 2,442,790 | C→A | 13.0% | D247Y (GAT→TAT) | yfcO ← | DUF2544 family putative outer membrane protein |
RA | 2,442,971 | C→A | 6.5% | E186D (GAG→GAT) | yfcO ← | DUF2544 family putative outer membrane protein |
RA | 2,450,335 | C→T | 93.8% | intergenic (‑44/+159) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,450,346 | G→T | 93.7% | intergenic (‑55/+148) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,452,454 | G→T | 92.5% | P62Q (CCG→CAG) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,453,358 | G→T | 25.6% | I197I (ATC→ATA) | fadI ← | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit |
RA | 2,454,297 | T→G | 94.1% | E39D (GAA→GAC) | yfcZ ← | UPF0381 family protein |
RA | 2,456,282 | C→A | 28.2% | intergenic (+157/‑209) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
RA | 2,464,043 | A→T | 5.9% | intergenic (+102/‑251) | gtrS → / → tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
RA | 2,474,418 | G→T | 91.3% | S413* (TCA→TAA) | emrY ← | putative multidrug efflux system |
RA | 2,483,811 | A→T | 10.8% | V540E (GTG→GAG) | oxc ← | oxalyl CoA decarboxylase, ThDP‑dependent |
RA | 2,494,310 | C→A | 17.1% | T150K (ACG→AAG) | ypdB → | response regulator activating yhjX; pyruvate‑responsive YpdAB two‑component system |
RA | 2,494,747 | G→T | 9.8% | D47Y (GAT→TAT) | ypdC → | putative DNA‑binding protein |
RA | 2,495,918 | C→A | 22.1% | V683F (GTT→TTT) | fryA ← | putative PTS enzyme, Hpr component/enzyme I component/enzyme IIA component |
RA | 2,503,015 | C→A | 14.5% | intergenic (‑110/‑94) | glk ← / → yfeO | glucokinase/putative ion channel protein |
RA | 2,503,813 | A→C | 11.4% | A235A (GCA→GCC) | yfeO → | putative ion channel protein |
RA | 2,504,065 | C→T | 27.4% | G319G (GGC→GGT) | yfeO → | putative ion channel protein |
RA | 2,514,152 | G→T | 6.1% | intergenic (‑1/‑258) | gltX ← / → valU | glutamyl‑tRNA synthetase/tRNA‑Val |
RA | 2,516,553 | T→G | 16.1% | E264D (GAA→GAC) | xapB ← | xanthosine transporter |
RA | 2,520,652 | C→A | 93.4% | I116I (ATC→ATA) | yfeH → | putative inorganic ion transporter |
RA | 2,526,023 | T→A | 14.7% | Y86N (TAC→AAC) | cysK → | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
RA | 2,526,851 | A→T | 7.3% | intergenic (+112/‑272) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
RA | 2,532,274 | A→T | 5.2% | A223A (GCT→GCA) | cysM ← | cysteine synthase B (O‑acetylserine sulfhydrolase B) |
RA | 2,540,445 | G→T | 5.5% | A138A (GCG→GCT) | murP → | N‑acetylmuramic acid permease, EIIBC component, PTS system |
RA | 2,542,627 | T→G | 43.2% | I389M (ATT→ATG) | yfeW → | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity |
RA | 2,549,676 | C→A | 92.3% | L28L (CTG→CTT) | eutL ← | putative ethanol utilization carboxysome structural protein |
RA | 2,559,092 | C→A | 17.0% | A384A (GCG→GCT) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
RA | 2,568,332 | G→T | 6.6% | R11S (CGT→AGT) | eutQ ← | RmlC‑like cupin domain protein |
RA | 2,568,720 | C→T | 93.3% | A33T (GCC→ACC) | eutP ← | putative P‑loop NTPase ethanolamine utilization protein |
RA | 2,573,363 | C→A | 16.4% | V123V (GTC→GTA) | tktB → | transketolase 2, thiamine triphosphate‑binding |
RA | 2,576,325 | C→A | 100% | E171D (GAG→GAT) | nudK ← | GDP‑mannose pyrophosphatase |
RA | 2,582,519 | C→A | 8.6% | N522K (AAC→AAA) | acrD → | aminoglycoside/multidrug efflux system |
RA | 2,583,584 | T→A | 7.7% | I877I (ATT→ATA) | acrD → | aminoglycoside/multidrug efflux system |
RA | 2,586,676 | G→T | 7.4% | H152N (CAC→AAC) | ypfH ← | palmitoyl‑CoA esterase activity, uncertain physiological substrate |
RA | 2,586,791 | G→T | 26.3% | G113G (GGC→GGA) | ypfH ← | palmitoyl‑CoA esterase activity, uncertain physiological substrate |
RA | 2,587,029:1 | +G | 94.2% | coding (101/699 nt) | ypfH ← | palmitoyl‑CoA esterase activity, uncertain physiological substrate |
RA | 2,589,808 | G→T | 7.9% | Q97K (CAG→AAG) | ypfJ ← | putative neutral zinc metallopeptidase |
RA | 2,589,933 | G→A | 93.2% | T55I (ACC→ATC) | ypfJ ← | putative neutral zinc metallopeptidase |
RA | 2,597,173 | T→G | 39.2% | L666R (CTG→CGG) | hyfB → | hydrogenase 4, membrane subunit |
RA | 2,598,122 | T→G | 6.1% | L306R (CTT→CGT) | hyfC → | hydrogenase 4, membrane subunit |
RA | 2,598,312 | C→A | 7.2% | A48E (GCG→GAG) | hyfD → | hydrogenase 4, membrane subunit |
RA | 2,601,404 | C→T | 10.7% | L377F (CTC→TTC) | hyfF → | hydrogenase 4, membrane subunit |
RA | 2,602,418 | C→A | 5.6% | I191I (ATC→ATA) | hyfG → | hydrogenase 4, subunit |
RA | 2,604,731 | C→T | 8.5% | R223W (CGG→TGG) | hyfI → | hydrogenase 4, Fe‑S subunit |
RA | 2,606,516 | G→T | 91.7% | D420Y (GAC→TAC) | hyfR → | hydrogenase‑4 transcriptional activator |
RA | 2,610,619 | C→A | 5.2% | G389G (GGC→GGA) | bepA → | periplasmic metalloprotease and chaperone for OM protein maintenance and assembly |
RA | 2,610,919 | C→A | 91.3% | intergenic (+3/‑18) | bepA → / → yfgD | periplasmic metalloprotease and chaperone for OM protein maintenance and assembly/putative oxidoreductase |
RA | 2,614,168 | C→A | 92.6% | D22Y (GAT→TAT) | upp ← | uracil phosphoribosyltransferase |
RA | 2,618,693 | G→T | 43.3% | E74* (GAA→TAA) | ppx → | exopolyphosphatase |
RA | 2,619,125 | G→T | 28.1% | G218C (GGT→TGT) | ppx → | exopolyphosphatase |
RA | 2,619,563 | C→A | 10.8% | R364R (CGA→AGA) | ppx → | exopolyphosphatase |
RA | 2,632,012 | C→A | 42.4% | intergenic (‑1/+10) | bamB ← / ← yfgM | BamABCDE complex OM biogenesis lipoprotein/putative anti‑RcsB factor |
RA | 2,646,327 | G→T | 5.4% | D159Y (GAT→TAT) | sseA → | 3‑mercaptopyruvate sulfurtransferase |
RA | 2,647,590 | C→A | 8.2% | E235* (GAA→TAA) | sseB ← | rhodanase‑like enzyme, sulfur transfer from thiosulfate |
RA | 2,648,521 | C→A | 5.0% | A399A (GCG→GCT) | pepB ← | aminopeptidase B |
RA | 2,651,665 | G→T | 94.5% | G210G (GGC→GGA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
RA | 2,661,569 | C→A | 5.3% | M229I (ATG→ATT) | hcaR ← | hca operon transcriptional regulator |
RA | 2,664,115 | C→A | 16.7% | R123R (CGG→AGG) | hcaF → | 3‑phenylpropionate dioxygenase, small (beta) subunit |
RA | 2,665,693 | C→A | 18.6% | G96G (GGC→GGA) | hcaD → | phenylpropionate dioxygenase, ferredoxin reductase subunit |
RA | 2,669,978 | C→A | 38.3% | A69A (GCG→GCT) | yphD ← | inner membrane putative ABC superfamily sugar transporter permease |
RA | 2,670,904 | G→T | 12.1% | R273S (CGC→AGC) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
RA | 2,671,274 | C→A | 93.6% | T149T (ACG→ACT) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
RA | 2,674,117 | C→A | 10.9% | R663L (CGC→CTC) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
RA | 2,678,030 | C→A | 31.7% | A279A (GCG→GCT) | glyA ← | serine hydroxymethyltransferase |
RA | 2,678,315 | C→A | 8.7% | A184A (GCG→GCT) | glyA ← | serine hydroxymethyltransferase |
RA | 2,678,647 | C→A | 5.4% | V74F (GTT→TTT) | glyA ← | serine hydroxymethyltransferase |
RA | 2,680,236 | T→A | 10.2% | L348Q (CTG→CAG) | hmp → | fused nitric oxide dioxygenase/dihydropteridine reductase 2 |
RA | 2,681,873 | T→A | 100% | Q97L (CAG→CTG) | glrR ← | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
RA | 2,683,829 | C→A | 93.3% | R210L (CGT→CTT) | glrK ← | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
RA | 2,692,793 | C→A | 38.9% | H226N (CAT→AAT) | yfhH → | putative DNA‑binding transcriptional regulator |
RA | 2,694,843 | G→T | 40.4% | I82I (ATC→ATA) | pdxJ ← | pyridoxine 5'‑phosphate synthase |
RA | 2,699,380 | C→A | 45.1% | P368P (CCG→CCT) | lepA ← | back‑translocating elongation factor EF4, GTPase |
RA | 2,715,643 | G→T | 94.5% | E778* (GAA→TAA) | pka → | protein lysine acetyltransferase |
RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
RA | 2,726,786 | C→A | 100% | A249A (GCG→GCT) | clpB ← | protein disaggregation chaperone |
RA | 2,727,213 | G→T | 8.4% | S107* (TCG→TAG) | clpB ← | protein disaggregation chaperone |
RA | 2,733,753 | C→T | 100% | E253K (GAG→AAG) | aroF ← | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible |
RA | 2,735,293 | A→T | 27.2% | I20I (ATA→ATT) | yfiR → | putative periplasmic inhibitor of YfiN activity |
RA | 2,742,753 | C→A | 6.9% | I207I (ATC→ATA) | yfjD → | UPF0053 family inner membrane protein |
RA | 2,749,134 | C→A | 6.9% | intergenic (+397/‑384) | smpB → / → intA | trans‑translation protein/CP4‑57 prophage; integrase |
RA | 2,757,927 | A→T | 17.7% | S196T (TCC→ACC) | yfjL ← | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein |
RA | 2,760,687 | A→T | 9.3% | V115V (GTA→GTT) | rnlB → | CP4‑57 prophage; uncharacterized protein |
RA | 2,761,733 | T→A | 31.0% | V222E (GTA→GAA) | yfjP → | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
RA | 2,771,358 | G→A | 94.3% | intergenic (+217/+147) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
RA | 2,776,219 | C→A | 5.8% | intergenic (‑134/+205) | ypjA ← / ← pinH | adhesin‑like autotransporter/pseudogene, invertase resolvase family |
RA | 2,778,281 | C→T | 21.0% | pseudogene (90/1374 nt) | ypjC ← | pseudogene |
RA | 2,779,067 | C→A | 89.2% | intergenic (‑697/+54) | ypjC ← / ← ileY | pseudogene/tRNA‑Ile |
RA | 2,803,846 | C→A | 26.3% | I48I (ATC→ATA) | ygaH → | putative L‑valine exporter, norvaline resistance protein |
RA | 2,805,420 | C→A | 5.3% | A212E (GCG→GAG) | emrA → | multidrug efflux system |
RA | 2,806,022 | G→T | 7.0% | T16T (ACG→ACT) | emrB → | multidrug efflux system protein |
RA | 2,806,531 | T→G | 17.2% | L186R (CTG→CGG) | emrB → | multidrug efflux system protein |
RA | 2,808,646 | G→T | 17.4% | R385S (CGC→AGC) | gshA ← | glutamate‑cysteine ligase |
RA | 2,811,275 | T→G | 6.9% | intergenic (‑56/+143) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
RA | 2,812,467 | C→A | 5.5% | M13I (ATG→ATT) | csrA ← | pleiotropic regulatory protein for carbon source metabolism |
RA | 2,813,731 | G→T | 13.0% | A547E (GCG→GAG) | alaS ← | alanyl‑tRNA synthetase |
RA | 2,825,783 | C→T | 94.0% | intergenic (‑135/‑52) | norR ← / → norV | anaerobic nitric oxide reductase DNA‑binding transcriptional activator/anaerobic nitric oxide reductase flavorubredoxin |
RA | 2,828,952 | C→A | 93.8% | T611T (ACG→ACT) | hypF ← | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
RA | 2,831,086 | C→A | 42.3% | E127* (GAA→TAA) | hydN ← | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
RA | 2,835,094 | C→A | 37.5% | P249Q (CCG→CAG) | ascB → | cryptic 6‑phospho‑beta‑glucosidase |
RA | 2,841,044 | C→A | 88.9% | A519A (GCG→GCT) | hycC ← | hydrogenase 3, membrane subunit |
RA | 2,846,112 | C→A | 36.8% | I206I (ATC→ATA) | hypD → | hydrogenase maturation protein |
RA | 2,850,790 | C→A | 93.1% | I113I (ATC→ATA) | mutS → | methyl‑directed mismatch repair protein |
RA | 2,860,460 | G→T | 28.6% | R151S (CGC→AGC) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
RA | 2,864,588 | C→A | 5.2% | D26Y (GAC→TAC) | truD ← | tRNA(Glu) pseudouridine(13) synthase |
JC | 2,871,516 | Δ124 bp | 7.6% | intergenic (+539/+289) | iap → / ← ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
RA | 2,873,087 | G→T | 92.7% | V15V (GTC→GTA) | ygbT ← | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
RA | 2,876,760 | C→T | 94.0% | G246G (GGG→GGA) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
RA | 2,878,668 | G→T | 94.8% | V637V (GTC→GTA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,879,449 | G→T | 89.2% | S377* (TCA→TAA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,880,202 | G→T | 14.3% | S126* (TCA→TAA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,883,189 | C→A | 5.4% | V90V (GTG→GTT) | cysI ← | sulfite reductase, beta subunit, NAD(P)‑binding, heme‑binding |
RA | 2,888,584 | G→T | 94.1% | I185I (ATC→ATA) | ygcQ ← | putative flavoprotein |
RA | 2,891,304 | C→A | 8.3% | intergenic (‑75/+19) | ygcS ← / ← ygcU | putative transporter/putative FAD‑containing dehydrogenase |
RA | 2,893,446 | T→A | 37.9% | K63* (AAA→TAA) | ygcW ← | putative dehydrogenase |
RA | 2,899,073 | C→A | 5.9% | R2S (CGC→AGC) | ygcG → | uncharacterized protein |
RA | 2,901,394 | C→A | 6.8% | A544A (GCG→GCT) | pyrG ← | CTP synthetase |
RA | 2,914,100 | C→A | 5.9% | A2A (GCG→GCT) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
RA | 2,915,010 | C→A | 11.7% | T150T (ACG→ACT) | gudP ← | putative D‑glucarate transporter |
RA | 2,927,355 | A→C | 6.0% | intergenic (‑308/‑239) | fucA ← / → fucP | L‑fuculose‑1‑phosphate aldolase/L‑fucose transporter |
RA | 2,930,508 | G→T | 5.1% | A522A (GCG→GCT) | fucI → | L‑fucose isomerase |
RA | 2,931,717 | C→A | 100% | N307K (AAC→AAA) | fucK → | L‑fuculokinase |
RA | 2,932,832 | C→A | 25.3% | R36S (CGT→AGT) | fucR → | l‑fucose operon activator |
RA | 2,932,835 | C→T | 40.5% | R37C (CGC→TGC) | fucR → | l‑fucose operon activator |
RA | 2,934,843 | G→T | 100% | H50N (CAT→AAT) | ygdD ← | UPF0382 family inner membrane protein |
RA | 2,936,686 | G→T | 24.6% | intergenic (‑182/‑10) | ygdI ← / → csdA | DUF903 family verified lipoprotein/cysteine sulfinate desulfinase |
RA | 2,938,640 | C→A | 16.9% | D188Y (GAT→TAT) | tcdA ← | tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
RA | 2,953,547 | C→A | 7.2% | L747L (CTG→CTT) | recC ← | exonuclease V (RecBCD complex), gamma chain |
RA | 2,957,480 | C→A | 25.6% | L19F (TTG→TTT) | ppdA ← | putative prepilin peptidase‑dependent protein |
RA | 2,959,004 | G→A | 100% | I131I (ATC→ATT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
RA | 2,959,786 | C→A | 10.3% | E670* (GAA→TAA) | ptsP ← | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
RA | 2,960,251 | C→A | 7.7% | E515* (GAA→TAA) | ptsP ← | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
RA | 2,962,962 | T→A | 45.1% | intergenic (‑626/‑59) | rppH ← / → mutH | RNA pyrophosphohydrolase/methyl‑directed mismatch repair protein |
RA | 2,964,899 | C→A | 7.6% | intergenic (+51/‑57) | ygdR → / → tas | DUF903 family verified lipoprotein/putative NADP(H)‑dependent aldo‑keto reductase |
RA | 2,967,572 | A→G | 34.5% | F601S (TTT→TCT) | aas ← | fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase |
RA | 2,985,256 | G→T | 6.2% | intergenic (+138/‑197) | ygeG → / → ygeH | SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator |
RA | 2,985,884 | C→T | 42.7% | I144I (ATC→ATT) | ygeH → | putative transcriptional regulator |
RA | 2,987,928 | C→A | 23.0% | pseudogene (524/633 nt) | ygeK ← | pseudogene; putative 2‑component transcriptional regulator |
RA | 2,988,554 | G→A | 36.3% | intergenic (‑103/+119) | ygeK ← / ← ygeN | pseudogene; putative 2‑component transcriptional regulator/pseudogene |
RA | 2,988,641 | T→C | 9.3% | intergenic (‑190/+32) | ygeK ← / ← ygeN | pseudogene; putative 2‑component transcriptional regulator/pseudogene |
RA | 2,989,295 | C→A | 94.5% | pseudogene (85/261 nt) | ygeN ← | pseudogene |
RA | 2,993,211 | C→A | 92.7% | V14L (GTG→TTG) | ygeR ← | LysM domain‑containing M23 family putative peptidase; septation lipoprotein |
RA | 2,993,699 | C→A | 94.2% | intergenic (‑449/‑5) | ygeR ← / → xdhA | LysM domain‑containing M23 family putative peptidase; septation lipoprotein/xanthine dehydrogenase, molybdenum binding subunit |
RA | 2,995,335 | C→A | 13.4% | V544V (GTC→GTA) | xdhA → | xanthine dehydrogenase, molybdenum binding subunit |
RA | 2,999,286 | G→T | 9.3% | intergenic (‑141/‑335) | ygeV ← / → ygeW | putative sigma‑54‑interacting transcriptional activator/putative carbamoyltransferase |
RA | 3,001,453 | C→A | 8.1% | Y195* (TAC→TAA) | ygeX → | 2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
RA | 3,005,841 | Δ1 bp | 9.1% | intergenic (+89/+132) | yqeA → / ← yqeB | putative amino acid kinase/XdhC‑CoxI family protein with NAD(P)‑binding Rossman fold |
RA | 3,007,428 | C→A | 6.8% | V57V (GTG→GTT) | yqeB ← | XdhC‑CoxI family protein with NAD(P)‑binding Rossman fold |
RA | 3,009,187 | G→T | 39.4% | intergenic (+90/‑232) | mocA → / → ygfK | CTP:molybdopterin cytidylyltransferase/putative Fe‑S subunit oxidoreductase subunit |
RA | 3,009,272 | G→A | 6.2% | intergenic (+175/‑147) | mocA → / → ygfK | CTP:molybdopterin cytidylyltransferase/putative Fe‑S subunit oxidoreductase subunit |
RA | 3,016,372 | C→A | 21.4% | F566L (TTC→TTA) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
RA | 3,017,285 | G→T | 89.6% | D871Y (GAC→TAC) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
RA | 3,019,203 | G→T | 27.1% | E27* (GAG→TAG) | guaD → | guanine deaminase |
RA | 3,022,877 | G→T | 9.4% | R472S (CGC→AGC) | ygfT ← | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
RA | 3,022,888 | C→A | 8.9% | R468L (CGG→CTG) | ygfT ← | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
RA | 3,024,081 | A→C | 41.6% | V70V (GTT→GTG) | ygfT ← | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
RA | 3,024,983 | C→G | 92.8% | G86G (GGC→GGG) | uacT → | uric acid permease |
RA | 3,025,678 | A→T | 23.7% | Q318L (CAA→CTA) | uacT → | uric acid permease |
RA | 3,028,224 | G→T | 20.7% | L104I (CTC→ATC) | lysS ← | lysine tRNA synthetase, constitutive |
RA | 3,028,266 | C→A | 11.4% | D90Y (GAC→TAC) | lysS ← | lysine tRNA synthetase, constitutive |
RA | 3,029,817 | A→T | 14.3% | V550E (GTG→GAG) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
RA | 3,030,181 | G→T | 34.2% | H429N (CAT→AAT) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
RA | 3,039,409 | T→G | 5.4% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,041,026 | C→A | 14.5% | D459Y (GAC→TAC) | gcvP ← | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,043,595 | C→A | 5.0% | M144I (ATG→ATT) | gcvT ← | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex |
RA | 3,044,281 | G→A | 18.1% | intergenic (‑255/+193) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
RA | 3,044,464 | G→A | 91.7% | intergenic (‑438/+10) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
RA | 3,046,958 | T→A | 6.9% | E414D (GAA→GAT) | pepP ← | proline aminopeptidase P II |
RA | 3,049,577 | T→G | 13.5% | intergenic (+53/‑23) | ssrS → / → fau | 6S RNA inhibits RNA polymerase promoter binding/5‑formyltetrahydrofolate cyclo‑ligase family protein |
RA | 3,049,645 | G→A | 11.6% | E16K (GAA→AAA) | fau → | 5‑formyltetrahydrofolate cyclo‑ligase family protein |
RA | 3,055,069 | C→A | 25.7% | V287V (GTC→GTA) | scpA → | methylmalonyl‑CoA mutase |
RA | 3,057,492 | A→T | 13.3% | E47D (GAA→GAT) | scpB → | methylmalonyl‑CoA decarboxylase, biotin‑independent |
RA | 3,058,692 | C→T | 30.3% | P178S (CCT→TCT) | scpC → | propionyl‑CoA:succinate CoA transferase |
RA | 3,058,769 | C→T | 44.5% | I203I (ATC→ATT) | scpC → | propionyl‑CoA:succinate CoA transferase |
RA | 3,059,577 | G→T | 5.2% | D473Y (GAT→TAT) | scpC → | propionyl‑CoA:succinate CoA transferase |
RA | 3,064,483 | C→A | 20.5% | D41Y (GAC→TAC) | fbaA ← | fructose‑bisphosphate aldolase, class II |
RA | 3,064,914 | G→T | 82.0% | I356I (ATC→ATA) | pgk ← | phosphoglycerate kinase |
RA | 3,068,135 | G→T | 28.3% | F140L (TTC→TTA) | yggD ← | MtlR family putative transcriptional repressor |
RA | 3,072,314 | C→A | 18.3% | E126* (GAA→TAA) | cmtB ← | putative mannitol‑specific enzyme IIA component of PTS |
RA | 3,075,114 | C→A | 100% | intergenic (‑120/‑158) | tktA ← / → loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; heat shock protein that binds Era |
RA | 3,076,526 | C→A | 100% | D211Y (GAC→TAC) | speB ← | agmatinase |
RA | 3,080,618 | T→A | 93.7% | V185E (GTG→GAG) | metK → | S‑adenosylmethionine synthetase |
RA | 3,081,697 | T→A | 24.6% | C19S (TGC→AGC) | galP → | D‑galactose transporter |
RA | 3,088,065 | C→A | 37.6% | V125V (GTG→GTT) | yggR ← | putative PilT family AAA+ ATPase |
RA | 3,092,182 | C→A | 22.4% | C248F (TGT→TTT) | yggM ← | DUF1202 family putative secreted protein |
RA | 3,097,262 | C→T | 47.8% | F297F (TTC→TTT) | mutY → | adenine DNA glycosylase |
RA | 3,097,763 | A→T | 5.5% | intergenic (+36/‑29) | yggX → / → mltC | protein that protects iron‑sulfur proteins against oxidative damage/membrane‑bound lytic murein transglycosylase C |
RA | 3,102,941 | T→A | 8.4% | S10R (AGT→AGA) | yqgA → | DUF554 family putative inner membrane protein |
RA | 3,104,247 | C→A | 23.6% | R80L (CGA→CTA) | yghD ← | putative membrane‑anchored secretion pathway M‑type protein |
RA | 3,110,751 | C→A | 91.2% | R574L (CGT→CTT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,111,434 | C→A | 90.1% | A346A (GCG→GCT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,120,216 | C→A | 92.6% | D389Y (GAT→TAT) | glcD ← | glycolate oxidase subunit, FAD‑linked |
RA | 3,132,601 | T→G | 25.7% | I172M (ATT→ATG) | yghU → | putative S‑transferase |
RA | 3,142,668 | G→T | 36.7% | L55I (CTC→ATC) | yqhA ← | UPF0114 family putative inner membrane protein |
RA | 3,144,158 | C→A | 89.0% | intergenic (+253/+19) | yghA → / ← exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
RA | 3,164,230 | C→A | 43.4% | R130S (CGT→AGT) | qseC → | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB |
RA | 3,173,669 | G→T | 92.0% | A189A (GCG→GCT) | ygiB → | DUF1190 family protein |
RA | 3,176,733 | G→T | 48.7% | intergenic (+51/+439) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
RA | 3,191,839 | T→A | 14.6% | N388Y (AAC→TAC) | glnE ← | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
RA | 3,211,527 | C→A | 5.6% | A303A (GCG→GCT) | aer ← | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
RA | 3,214,709 | C→A | 27.4% | intergenic (‑103/‑116) | ygjH ← / → ebgR | putative tRNA binding protein; putative tRNA corner chaperone/transcriptional repressor |
RA | 3,215,927 | C→A | 17.9% | intergenic (+119/‑65) | ebgR → / → ebgA | transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit |
RA | 3,217,289 | A→T | 41.3% | H433L (CAC→CTC) | ebgA → | evolved beta‑D‑galactosidase, alpha subunit |
RA | 3,224,028 | C→A | 7.3% | L594L (CTC→CTA) | ygjK → | alpha‑glucosidase |
RA | 3,224,419 | C→A | 5.8% | R725S (CGT→AGT) | ygjK → | alpha‑glucosidase |
RA | 3,224,927 | C→A | 93.9% | intergenic (+329/‑97) | ygjK → / → fadH | alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
RA | 3,226,008 | G→T | 6.4% | A329S (GCC→TCC) | fadH → | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
RA | 3,230,012 | C→A | 6.9% | R38R (CGC→CGA) | ygjQ → | DUF218 superfamily protein |
RA | 3,230,857 | C→G | 44.7% | A63G (GCC→GGC) | ygjR → | putative NAD(P)‑dependent dehydrogenase |
RA | 3,231,349 | A→C | 43.9% | Q227P (CAG→CCG) | ygjR → | putative NAD(P)‑dependent dehydrogenase |
RA | 3,233,218 | C→A | 5.9% | intergenic (+314/‑85) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
RA | 3,237,654 | C→A | 23.2% | M149I (ATG→ATT) | uxaC ← | uronate isomerase |
RA | 3,239,086 | C→A | 9.2% | I208I (ATC→ATA) | exuT → | hexuronate transporter |
RA | 3,245,848 | G→T | 90.8% | L62L (CTG→CTT) | yhaH → | DUF805 family inner membrane protein |
RA | 3,246,634 | A→T | 27.2% | intergenic (+8/+43) | yhaI → / ← yhaJ | DUF805 family inner membrane protein/LysR family putative transcriptional regulator |
RA | 3,252,258 | C→A | 92.5% | D251Y (GAT→TAT) | tdcG ← | L‑serine dehydratase 3, anaerobic |
RA | 3,257,209 | C→A | 5.4% | E390* (GAA→TAA) | tdcC ← | L‑threonine/L‑serine transporter |
RA | 3,263,315 | T→C | 5.3% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,263,466 | G→T | 22.5% | intergenic (+505/+109) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,266,646 | C→A | 91.5% | G91C (GGT→TGT) | garL ← | alpha‑dehydro‑beta‑deoxy‑D‑glucarate aldolase |
RA | 3,267,286 | C→A | 9.1% | P327P (CCG→CCT) | garP ← | putative (D)‑galactarate transporter |
RA | 3,274,047 | T→A | 5.2% | *158R (TGA→AGA) | agaV → | N‑acetylgalactosamine‑specific enzyme IIB component of PTS |
RA | 3,275,040 | C→A | 13.2% | intergenic (+56/‑295) | agaA → / → agaS | pseudogene, N‑acetylgalactosamine‑6‑phosphate deacetylase fragment; putative N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
RA | 3,275,220 | C→T | 8.6% | intergenic (+236/‑115) | agaA → / → agaS | pseudogene, N‑acetylgalactosamine‑6‑phosphate deacetylase fragment; putative N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
RA | 3,285,974 | C→A | 5.2% | D241Y (GAC→TAC) | rsmI ← | 16S rRNA C1402 2'‑O‑ribose methyltransferase, SAM‑dependent |
RA | 3,292,914 | C→A | 6.2% | D121Y (GAT→TAT) | yhbP ← | UPF0306 family protein |
RA | 3,296,612 | G→T | 43.3% | A255A (GCG→GCT) | yhbV → | U32 peptidase family protein |
RA | 3,298,059 | C→A | 7.1% | R373L (CGC→CTC) | mtr ← | tryptophan transporter of high affinity |
RA | 3,302,027 | G→T | 93.4% | S86* (TCG→TAG) | nlpI ← | lipoprotein involved in osmotic sensitivity and filamentation |
RA | 3,309,022 | G→T | 8.2% | R118S (CGT→AGT) | infB ← | translation initiation factor IF‑2 |
RA | 3,311,488 | G→T | 5.6% | intergenic (‑123/+84) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
RA | 3,312,862 | T→A | 28.3% | R289R (CGT→CGA) | argG → | argininosuccinate synthetase |
RA | 3,314,591 | C→T | 6.4% | A128T (GCA→ACA) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
RA | 3,314,870 | C→A | 91.3% | A35S (GCG→TCG) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
RA | 3,329,704 | G→T | 18.5% | V50V (GTC→GTA) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
RA | 3,332,632 | G→T | 9.7% | L265I (CTT→ATT) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
RA | 3,332,963 | C→A | 25.0% | A154A (GCG→GCT) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
RA | 3,335,651 | C→A | 8.6% | S7* (TCG→TAG) | kdsC → | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase |
RA | 3,347,778 | G→A | 94.0% | intergenic (‑369/‑306) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
RA | 3,351,650 | G→T | 44.4% | E1189D (GAG→GAT) | gltB → | glutamate synthase, large subunit |
RA | 3,354,405 | C→T | 93.9% | intergenic (+430/‑130) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
RA | 3,357,204 | G→T | 5.4% | E347* (GAA→TAA) | yhcD → | putative outer membrane fimbrial subunit usher protein |
RA | 3,357,229 | C→A | 29.3% | S355* (TCG→TAG) | yhcD → | putative outer membrane fimbrial subunit usher protein |
RA | 3,361,234 | G→T | 7.9% | D17Y (GAC→TAC) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
RA | 3,363,149 | C→A | 6.1% | A187A (GCG→GCT) | nanK ← | N‑acetylmannosamine kinase |
RA | 3,365,607 | G→T | 94.0% | I109I (ATC→ATA) | nanT ← | sialic acid transporter |
RA | 3,368,168 | C→T | 6.9% | intergenic (‑320/‑60) | nanR ← / → dcuD | transcriptional repressor of the nan operon, induced by sialic acid/putative transporter |
RA | 3,372,048 | C→A | 21.3% | intergenic (‑38/+181) | rplM ← / ← yhcM | 50S ribosomal subunit protein L13/putative AFG1‑like family P‑loop ATPase |
RA | 3,373,985 | C→A | 92.9% | intergenic (+37/‑117) | yhcB → / → degQ | DUF1043 family inner membrane‑anchored protein/serine endoprotease, periplasmic |
RA | 3,375,260 | G→T | 91.0% | D387Y (GAT→TAT) | degQ → | serine endoprotease, periplasmic |
RA | 3,378,786 | C→T | 6.2% | intergenic (+254/‑111) | argR → / → yhcN | l‑arginine‑responsive arginine metabolism regulon transcriptional regulator/cadmium and peroxide resistance protein, stress‑induced |
RA | 3,380,174 | C→A | 30.8% | S458S (TCG→TCT) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
RA | 3,380,982 | T→A | 7.8% | Q189L (CAA→CTA) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
RA | 3,385,720 | C→A | 5.3% | intergenic (‑333/+97) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
RA | 3,386,303 | A→T | 14.3% | I1105I (ATT→ATA) | yhdP ← | DUF3971‑AsmA2 domains protein |
RA | 3,386,672 | C→A | 23.3% | P982P (CCG→CCT) | yhdP ← | DUF3971‑AsmA2 domains protein |
RA | 3,396,082 | G→T | 91.2% | R204S (CGT→AGT) | csrD ← | targeting factor for csrBC sRNA degradation |
RA | 3,397,077 | G→T | 5.7% | A79S (GCC→TCC) | acuI → | putative acryloyl‑CoA reductase |
RA | 3,397,642 | C→A | 11.6% | S267* (TCA→TAA) | acuI → | putative acryloyl‑CoA reductase |
RA | 3,407,007 | G→A | 41.6% | intergenic (‑183/‑216) | acrS ← / → acrE | acrAB operon transcriptional repressor/cytoplasmic membrane lipoprotein |
RA | 3,407,008 | G→A | 18.3% | intergenic (‑184/‑215) | acrS ← / → acrE | acrAB operon transcriptional repressor/cytoplasmic membrane lipoprotein |
RA | 3,409,807 | C→A | 7.9% | I472I (ATC→ATA) | acrF → | multidrug efflux system protein |
RA | 3,411,136 | G→T | 11.7% | A915A (GCG→GCT) | acrF → | multidrug efflux system protein |
RA | 3,415,551 | C→A | 7.4% | P290T (CCT→ACT) | yhdY → | putative amino‑acid transporter subunit |
RA | 3,416,890 | T→G | 6.0% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
RA | 3,417,999 | C→A | 6.3% | noncoding (2144/2904 nt) | rrlD ← | 23S ribosomal RNA of rrnD operon |
RA | 3,433,018 | T→G | 8.1% | E114A (GAG→GCG) | rplQ ← | 50S ribosomal subunit protein L17 |
RA | 3,437,010 | C→A | 15.3% | V149V (GTG→GTT) | secY ← | preprotein translocase membrane subunit |
RA | 3,437,638 | G→T | 20.9% | G87G (GGC→GGA) | rplO ← | 50S ribosomal subunit protein L15 |
RA | 3,440,151 | G→T | 93.6% | I31I (ATC→ATA) | rpsN ← | 30S ribosomal subunit protein S14 |
RA | 3,440,444 | G→T | 100% | S118S (TCC→TCA) | rplE ← | 50S ribosomal subunit protein L5 |
RA | 3,440,597 | G→T | 5.1% | I67I (ATC→ATA) | rplE ← | 50S ribosomal subunit protein L5 |
RA | 3,440,832 | T→C | 89.9% | N99D (AAC→GAC) | rplX ← | 50S ribosomal subunit protein L24 |
RA | 3,444,570 | G→T | 5.1% | R52S (CGT→AGT) | rplB ← | 50S ribosomal subunit protein L2 |
RA | 3,447,853 | A→T | 12.8% | V302E (GTA→GAA) | gspA ← | general secretory pathway component, cryptic |
RA | 3,449,050 | C→T | 11.4% | F38F (TTC→TTT) | gspC → | general secretory pathway component, cryptic |
RA | 3,455,867 | C→A | 100% | I55I (ATC→ATA) | gspJ → | putative general secretory pathway component, cryptic |
RA | 3,457,607 | G→T | 5.7% | V109V (GTG→GTT) | gspL → | general secretory pathway component, cryptic |
RA | 3,457,896 | C→A | 6.9% | P206T (CCT→ACT) | gspL → | general secretory pathway component, cryptic |
RA | 3,462,472 | G→T | 12.8% | G247G (GGC→GGA) | chiA ← | periplasmic endochitinase |
RA | 3,467,941 | C→T | 10.2% | intergenic (‑30/+96) | rpsL ← / ← tusB | 30S ribosomal subunit protein S12/mnm(5)‑s(2)U34‑tRNA synthesis 2‑thiolation protein |
RA | 3,473,139 | G→T | 100% | I276I (ATC→ATA) | kefB ← | potassium:proton antiporter |
RA | 3,479,769 | A→T | 100% | E97D (GAA→GAT) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
RA | 3,483,095 | C→A | 24.1% | V149F (GTT→TTT) | argD ← | bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase |
RA | 3,488,966 | G→C | 89.7% | A533P (GCC→CCC) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,489,397 | C→A | 85.7% | F676L (TTC→TTA) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,490,359 | C→T | 7.5% | intergenic (+123/‑3) | nirD → / → nirC | nitrite reductase, NAD(P)H‑binding, small subunit/nitrite transporter |
RA | 3,495,516 | C→A | 10.4% | S297* (TCG→TAG) | frlB → | fructoselysine‑6‑P‑deglycase |
RA | 3,498,239 | A→C | 11.2% | intergenic (+97/+55) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
RA | 3,501,571 | C→A | 92.9% | G127C (GGC→TGC) | php ← | phosphotriesterase homology protein |
RA | 3,504,143 | G→T | 39.8% | R65S (CGT→AGT) | yhfX ← | putative pyridoxal 5'‑phosphate binding protein |
RA | 3,504,943 | C→A | 19.3% | R254L (CGA→CTA) | yhfZ ← | putative DNA‑binding transcriptional regulator |
RA | 3,507,749 | G→T | 87.4% | H224N (CAT→AAT) | rpe ← | D‑ribulose‑5‑phosphate 3‑epimerase |
RA | 3,510,311 | C→A | 23.9% | G119C (GGT→TGT) | damX ← | cell division protein that binds to the septal ring |
RA | 3,513,424 | A→T | 49.4% | V213V (GTT→GTA) | hofQ ← | DNA catabolic putative fimbrial transporter |
RA | 3,519,657 | G→T | 100% | intergenic (‑149/‑171) | nudE ← / → yrfF | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH/inner membrane protein |
RA | 3,525,950 | C→T | 26.4% | intergenic (‑152/‑227) | yhgE ← / → pck | DUF4153 family putative inner membrane protein/phosphoenolpyruvate carboxykinase |
RA | 3,542,744 | T→A | 10.2% | Q229L (CAG→CTG) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
RA | 3,543,959 | G→T | 94.5% | A625E (GCG→GAG) | malP ← | maltodextrin phosphorylase |
RA | 3,544,788 | T→C | 5.4% | M349V (ATG→GTG) | malP ← | maltodextrin phosphorylase |
RA | 3,548,048 | T→A | 11.7% | S535R (AGT→AGA) | malT → | mal regulon transcriptional activator |
RA | 3,550,177 | T→A | 8.5% | Q11L (CAG→CTG) | rtcA ← | RNA 3'‑terminal phosphate cyclase |
RA | 3,551,503 | T→C | 17.6% | intergenic (‑65/‑124) | rtcB ← / → rtcR | RNA‑splicing ligase/sigma 54‑dependent transcriptional regulator of rtcBA expression |
RA | 3,557,815 | T→A | 9.0% | K709N (AAA→AAT) | glgP ← | glycogen phosphorylase |
RA | 3,561,574 | C→A | 94.7% | W372L (TGG→TTG) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
RA | 3,563,911 | C→A | 11.9% | E257* (GAA→TAA) | glgX ← | glycogen debranching enzyme |
RA | 3,571,118 | G→T | 5.6% | F323L (TTC→TTA) | gntR ← | d‑gluconate inducible gluconate regulon transcriptional repressor |
RA | 3,580,673 | G→T | 14.2% | R124I (AGA→ATA) | yhhA → | DUF2756 family protein |
RA | 3,585,079 | C→A | 24.6% | A203S (GCC→TCC) | ugpB ← | glycerol‑3‑phosphate transporter subunit |
RA | 3,588,904 | A→T | 26.9% | L287Q (CTG→CAG) | livH ← | leucine/isoleucine/valine transporter subunit |
RA | 3,589,238 | G→T | 5.5% | R176S (CGC→AGC) | livH ← | leucine/isoleucine/valine transporter subunit |
RA | 3,590,930 | T→A | 7.1% | intergenic (‑10/‑414) | livK ← / → panM | leucine transporter subunit/PanD autocleavage accelerator, panothenate synthesis |
RA | 3,598,440 | C→A | 22.2% | N34K (AAC→AAA) | yhhL → | DUF1145 family protein |
RA | 3,618,112 | G→T | 8.6% | A125A (GCG→GCT) | yhhI → | putative transposase |
RA | 3,626,167 | A→T | 5.8% | intergenic (‑217/+45) | yhiJ ← / ← yhiL | DUF4049 family protein/pseudogene, DUF4049 family protein |
RA | 3,629,013 | C→A | 6.7% | F271L (TTC→TTA) | yhiM → | acid resistance protein, inner membrane |
RA | 3,632,600 | T→G | 23.2% | intergenic (+99/+145) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
RA | 3,639,551 | C→A | 27.4% | T269T (ACC→ACA) | rlmJ → | 23S rRNA m(6)A2030 methyltransferase, SAM‑dependent |
RA | 3,641,650 | G→A | 6.5% | intergenic (+144/‑4) | agrA → / → agrB | Inactive antisense sRNA/Antisense sRNA antitoxin for the DinQ toxin |
RA | 3,643,207 | C→A | 12.4% | L305I (CTT→ATT) | arsB → | arsenite/antimonite transporter |
RA | 3,647,164 | C→A | 6.5% | intergenic (+91/‑157) | yhiS → / → slp | pseudogene/outer membrane lipoprotein |
RA | 3,652,706 | G→T | 5.4% | V39F (GTC→TTC) | mdtE → | anaerobic multidrug efflux transporter, ArcA‑regulated |
RA | 3,656,367 | C→A | 12.8% | A865E (GCG→GAG) | mdtF → | anaerobic multidrug efflux transporter, ArcA‑regulated |
RA | 3,662,660 | T→C | 90.3% | intergenic (‑112/‑292) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
RA | 3,670,418 | C→A | 5.1% | P431P (CCG→CCT) | yhjG ← | putative inner membrane‑anchored periplasmic AsmA family protein |
RA | 3,676,982 | T→A | 7.4% | intergenic (‑175/+8) | dctA ← / ← yhjK | C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase |
RA | 3,679,022 | C→T | 5.9% | intergenic (‑44/+38) | yhjK ← / ← bcsC | cyclic‑di‑GMP phosphodiesterase/cellulose synthase subunit |
RA | 3,679,301 | T→G | 100% | Q1078P (CAG→CCG) | bcsC ← | cellulose synthase subunit |
RA | 3,679,324 | C→A | 100% | M1070I (ATG→ATT) | bcsC ← | cellulose synthase subunit |
RA | 3,680,910 | G→T | 89.0% | H542N (CAT→AAT) | bcsC ← | cellulose synthase subunit |
RA | 3,689,369 | C→A | 8.3% | A59A (GCG→GCT) | yhjR ← | DUF2629 family protein |
RA | 3,698,875 | G→T | 41.4% | F92L (TTC→TTA) | dppB ← | dipeptide/heme transporter |
RA | 3,701,561 | G→A | 28.7% | intergenic (‑496/+415) | dppA ← / ← proK | dipeptide transporter/tRNA‑Pro |
RA | 3,701,725 | C→A | 5.2% | intergenic (‑660/+251) | dppA ← / ← proK | dipeptide transporter/tRNA‑Pro |
RA | 3,703,272 | C→A | 34.0% | A188A (GCG→GCT) | eptB ← | KDO phosphoethanolamine transferase, Ca(2+)‑inducible |
RA | 3,711,401 | T→A | 11.2% | N244K (AAT→AAA) | ghrB → | glyoxylate/hydroxypyruvate reductase B |
RA | 3,717,788 | C→A | 93.3% | P297P (CCG→CCT) | glyQ ← | glycine tRNA synthetase, alpha subunit |
RA | 3,718,959 | C→A | 28.3% | L38F (TTG→TTT) | ysaB ← | uncharacterized protein |
RA | 3,721,470 | T→G | 5.0% | D421A (GAT→GCT) | xylB ← | xylulokinase |
RA | 3,730,615 | C→A | 22.7% | intergenic (‑78/‑242) | bax ← / → malS | putative glucosaminidase/alpha‑amylase |
RA | 3,738,431 | C→A | 94.0% | P90T (CCA→ACA) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
RA | 3,759,388 | C→A | 30.0% | N1282K (AAC→AAA) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
RA | 3,767,000 | G→T | 40.1% | D454Y (GAC→TAC) | mtlA → | fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
RA | 3,767,143 | C→A | 7.8% | I501I (ATC→ATA) | mtlA → | fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
RA | 3,769,093 | C→A | 9.1% | T54T (ACC→ACA) | mtlR → | mannitol operon repressor |
RA | 3,774,382 | T→G | 14.4% | intergenic (+5/‑193) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,774,412 | A→C | 6.1% | intergenic (+35/‑163) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,774,460 | G→C | 6.0% | intergenic (+83/‑115) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,774,518 | A→C | 9.4% | intergenic (+141/‑57) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,785,915 | G→T | 91.6% | intergenic (‑4/+271) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
RA | 3,791,588 | T→A | 22.9% | intergenic (+21/+11) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
JC JC | 3,795,902 | IS5 (+) +4 bp | 5.2% | coding (514‑517/1020 nt) | waaR ← | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase |
RA | 3,802,238 | A→T | 14.9% | A113A (GCA→GCT) | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
RA | 3,810,195 | C→A | 94.7% | R54S (CGT→AGT) | yicC → | UPF0701 family protein |
RA | 3,814,302 | T→A | 29.1% | S77C (AGC→TGC) | ligB ← | DNA ligase, NAD(+)‑dependent |
RA | 3,816,601 | A→T | 93.9% | H281L (CAC→CTC) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,816,686 | G→T | 8.9% | S309S (TCG→TCT) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,818,010 | C→A | 92.0% | H46N (CAT→AAT) | trmH → | tRNA mG18‑2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,822,340 | A→C | 11.5% | Q12H (CAA→CAC) | xanP → | xanthine permease |
RA | 3,825,702 | C→A | 91.2% | K732N (AAG→AAT) | yicI ← | putative alpha‑glucosidase |
RA | 3,828,206 | T→A | 17.2% | S362C (AGT→TGT) | yicJ ← | putative transporter |
RA | 3,829,020 | G→T | 6.5% | F90L (TTC→TTA) | yicJ ← | putative transporter |
RA | 3,829,715 | T→G | 5.2% | intergenic (+39/‑70) | selC → / → yicT | tRNA‑Sec/pseudogene |
RA | 3,830,197 | C→A | 93.4% | intergenic (+281/‑116) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,830,311 | G→T | 90.2% | intergenic (+395/‑2) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,834,958 | G→T | 5.5% | Q48K (CAG→AAG) | nepI ← | putative transporter |
RA | 3,835,154 | G→A | 30.3% | intergenic (‑55/+156) | nepI ← / ← yicN | putative transporter/DUF1198 family protein |
RA | 3,838,672 | T→A | 9.4% | L450Q (CTG→CAG) | ade → | cryptic adenine deaminase |
RA | 3,839,034 | C→A | 5.1% | Q571K (CAG→AAG) | ade → | cryptic adenine deaminase |
RA | 3,846,307 | C→A | 21.2% | A14A (GCG→GCT) | ivbL ← | ilvB operon leader peptide |
RA | 3,849,854 | A→T | 5.1% | H27L (CAC→CTC) | yidI → | inner membrane protein |
RA | 3,851,275 | G→T | 22.2% | H164N (CAT→AAT) | yidJ ← | sulfatase/phosphatase superfamily protein |
RA | 3,857,630 | C→A | 7.5% | R124R (CGC→CGA) | yidP → | UTRA domain‑containing GntR family putative transcriptional regulator |
RA | 3,860,159 | C→A | 100% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
RA | 3,860,327 | C→A | 40.6% | intergenic (‑70/+42) | ibpB ← / ← ibpA | heat shock chaperone/heat shock chaperone |
RA | 3,860,653 | C→A | 42.9% | E44* (GAA→TAA) | ibpA ← | heat shock chaperone |
RA | 3,860,715 | A→T | 5.5% | L23* (TTA→TAA) | ibpA ← | heat shock chaperone |
RA | 3,865,120 | C→A | 41.1% | intergenic (‑30/+90) | dgoT ← / ← dgoD | D‑galactonate transporter/galactonate dehydratase |
RA | 3,871,025 | T→G | 5.9% | intergenic (‑200/+40) | yidB ← / ← gyrB | DUF937 family protein/DNA gyrase, subunit B |
RA | 3,874,100 | C→A | 9.9% | R161L (CGC→CTC) | recF ← | gap repair protein |
RA | 3,875,627 | C→A | 5.4% | G19C (GGT→TGT) | dnaN ← | DNA polymerase III, beta subunit |
RA | 3,876,274 | C→A | 6.7% | P272P (CCG→CCT) | dnaA ← | chromosomal replication initiator protein DnaA, DNA‑binding transcriptional dual regulator |
RA | 3,882,020 | G→T | 10.5% | intergenic (+151/‑70) | tnaC → / → tnaA | tryptophanase leader peptide/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
RA | 3,883,535 | T→A | 9.3% | intergenic (+30/‑61) | tnaA → / → tnaB | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/tryptophan transporter of low affinity |
RA | 3,885,645 | C→A | 8.3% | T224K (ACG→AAG) | mdtL → | multidrug efflux system protein |
RA | 3,891,994 | G→T | 6.6% | intergenic (+25/+37) | cbrC → / ← yieK | UPF0167 family protein/putative 6‑phosphogluconolactonase |
RA | 3,893,385 | C→A | 7.2% | D185Y (GAT→TAT) | yieL ← | putative xylanase |
RA | 3,894,614 | C→A | 15.5% | A323S (GCA→TCA) | bglH ← | carbohydrate‑specific outer membrane porin, cryptic |
RA | 3,896,189 | G→T | 14.9% | T291T (ACC→ACA) | bglB ← | cryptic phospho‑beta‑glucosidase B |
RA | 3,898,349 | G→A | 5.1% | F203F (TTC→TTT) | bglF ← | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component |
RA | 3,906,261 | C→A | 13.3% | E256D (GAG→GAT) | glmS ← | L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
RA | 3,907,508 | T→A | 6.1% | K351N (AAA→AAT) | glmU ← | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
RA | 3,907,559 | A→T | 5.8% | P334P (CCT→CCA) | glmU ← | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
RA | 3,910,894 | C→A | 92.7% | M244I (ATG→ATT) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
RA | 3,914,395 | T→A | 8.5% | Q52L (CAG→CTG) | atpE ← | F0 sector of membrane‑bound ATP synthase, subunit c |
RA | 3,915,091 | C→A | 10.1% | T107T (ACG→ACT) | atpB ← | F0 sector of membrane‑bound ATP synthase, subunit a |
RA | 3,916,052 | C→A | 30.3% | intergenic (‑252/+365) | atpI ← / ← rsmG | ATP synthase, membrane‑bound accessory factor/16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
RA | 3,916,830 | C→A | 93.8% | D71Y (GAT→TAT) | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
RA | 3,917,548 | C→A | 17.2% | S482S (TCG→TCT) | mnmG ← | 5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
RA | 3,920,013 | G→T | 6.4% | D117E (GAC→GAA) | asnC ← | transcriptional activator of asnA; autorepressor |
RA | 3,923,028 | C→A | 43.2% | D476Y (GAC→TAC) | ravA ← | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
RA | 3,926,831 | G→T | 90.2% | D41Y (GAT→TAT) | rbsD → | putative cytoplasmic sugar‑binding protein |
RA | 3,927,972 | G→T | 37.5% | E279* (GAA→TAA) | rbsA → | fused D‑ribose transporter subunits of ABC superfamily: ATP‑binding components |
RA | 3,933,525 | A→T | 5.2% | L150I (TTA→ATA) | hsrA ← | putative multidrug or homocysteine efflux system |
RA | 3,933,680 | G→T | 27.8% | S98* (TCG→TAG) | hsrA ← | putative multidrug or homocysteine efflux system |
RA | 3,935,100 | G→T | 43.7% | intergenic (‑413/‑68) | yieP ← / → rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
RA | 3,944,000 | T→A | 9.6% | pseudogene (81/984 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
RA | 3,948,349 | C→A | 6.1% | L504L (CTC→CTA) | ilvD → | dihydroxyacid dehydratase |
RA | 3,950,395 | C→A | 27.0% | E262D (GAG→GAT) | ilvY ← | transcriptional activator of ilvC; autorepressor |
RA | 3,952,658 | C→T | 36.9% | D443D (GAC→GAT) | ilvC → | ketol‑acid reductoisomerase, NAD(P)‑binding |
RA | 3,952,852 | A→T | 11.8% | intergenic (+47/+40) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
RA | 3,955,039 | C→A | 5.5% | H335N (CAC→AAC) | rep → | DNA helicase and single‑stranded DNA‑dependent ATPase |
RA | 3,956,662 | T→G | 10.0% | S310R (AGC→CGC) | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
RA | 3,959,243 | G→T | 6.7% | P41P (CCG→CCT) | trxA → | thioredoxin 1 |
RA | 3,960,036 | G→A | 93.2% | R87H (CGC→CAC) | rho → | transcription termination factor |
RA | 3,966,854 | C→A | 89.0% | R325S (CGT→AGT) | rffG → | dTDP‑glucose 4,6‑dehydratase |
RA | 3,967,474 | G→T | 41.5% | A169A (GCG→GCT) | rffH → | glucose‑1‑phosphate thymidylyltransferase |
RA | 3,969,710 | G→T | 89.2% | G25C (GGT→TGT) | wzxE → | O‑antigen translocase |
RA | 3,970,026 | C→A | 16.4% | A130D (GCC→GAC) | wzxE → | O‑antigen translocase |
RA | 3,976,568 | A→T | 5.1% | Y84F (TAC→TTC) | aslB → | putative AslA‑specific sulfatase‑maturating enzyme |
RA | 3,988,075 | T→A | 91.9% | V65E (GTG→GAG) | yifL → | putative lipoprotein |
RA | 3,994,076 | A→T | 93.2% | L114* (TTA→TAA) | yigE ← | DUF2233 family protein |
RA | 3,994,247 | A→T | 95.0% | V57E (GTG→GAG) | yigE ← | DUF2233 family protein |
RA | 3,994,758 | G→T | 5.7% | intergenic (‑342/‑28) | yigE ← / → corA | DUF2233 family protein/magnesium/nickel/cobalt transporter |
RA | 3,998,903 | C→A | 12.8% | L228I (CTC→ATC) | pldA → | outer membrane phospholipase A |
RA | 4,001,030 | G→T | 5.5% | V603F (GTT→TTT) | recQ → | ATP‑dependent DNA helicase |
RA | 4,002,848 | G→T | 5.4% | V107F (GTT→TTT) | pldB → | lysophospholipase L2 |
RA | 4,009,667 | T→C | 12.4% | intergenic (‑138/‑124) | ysgA ← / → udp | putative carboxymethylenebutenolidase/uridine phosphorylase |
RA | 4,009,705 | G→A | 90.8% | intergenic (‑176/‑86) | ysgA ← / → udp | putative carboxymethylenebutenolidase/uridine phosphorylase |
RA | 4,024,827 | G→T | 41.9% | D103Y (GAT→TAT) | pepQ → | proline dipeptidase |
RA | 4,035,421 | G→T | 43.3% | intergenic (‑62/‑8) | mobA ← / → yihD | molybdopterin‑guanine dinucleotide synthase/DUF1040 protein YihD |
RA | 4,039,399 | G→T | 18.7% | F188L (TTC→TTA) | yihG ← | inner membrane protein, inner membrane acyltransferase |
RA | 4,046,172 | A→T | 37.5% | K256N (AAA→AAT) | hemN → | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
RA | 4,047,387 | G→T | 9.2% | H418N (CAT→AAT) | glnG ← | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
RA | 4,052,201 | C→A | 5.5% | F145L (TTC→TTA) | typA → | GTP‑binding protein |
RA | 4,054,222 | T→A | 8.3% | V139D (GTT→GAT) | yihL → | putative DNA‑binding transcriptional regulator |
RA | 4,056,018 | T→A | 93.0% | F138I (TTC→ATC) | yihN → | MFS transporter family protein |
RA | 4,057,706 | A→T | 7.4% | intergenic (‑51/+17) | ompL ← / ← yihO | outer membrane porin L/putative transporter |
RA | 4,062,424 | G→T | 93.3% | I71I (ATC→ATA) | yihQ ← | alpha‑glucosidase |
RA | 4,066,133 | T→G | 100% | S267R (AGC→CGC) | yihU ← | gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
RA | 4,068,208 | C→A | 94.6% | G60G (GGC→GGA) | yihW → | DeoR family putative transcriptional regulator |
RA | 4,070,728 | G→T | 6.9% | M118I (ATG→ATT) | dtd → | D‑tyr‑tRNA(Tyr) deacylase |
RA | 4,078,761 | C→A | 11.5% | R141L (CGC→CTC) | fdoG ← | formate dehydrogenase‑O, large subunit |
RA | 4,094,362 | C→A | 94.5% | W181L (TGG→TTG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
RA | 4,096,555 | G→T | 10.7% | S53S (TCG→TCT) | fieF → | ferrous iron and zinc transporter |
RA | 4,097,822 | G→T | 92.5% | E115* (GAA→TAA) | pfkA → | 6‑phosphofructokinase I |
RA | 4,101,697 | G→T | 6.8% | S149* (TCG→TAG) | yiiQ ← | DUF1454 family putative periplasmic protein |
RA | 4,105,186 | C→A | 14.6% | D108Y (GAT→TAT) | glpX ← | fructose 1,6‑bisphosphatase II |
RA | 4,107,450 | A→G | 5.2% | I190T (ATT→ACT) | glpF ← | glycerol facilitator |
RA | 4,108,097 | A→C | 9.9% | intergenic (‑79/‑346) | glpF ← / → zapB | glycerol facilitator/FtsZ stabilizer; septal ring assembly factor, stimulates cell division |
RA | 4,122,248 | A→T | 44.5% | intergenic (+53/‑296) | metL → / → metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase |
RA | 4,127,022 | T→G | 94.4% | E188D (GAA→GAC) | yijF ← | DUF1287 family protein |
RA | 4,143,375 | A→G | 8.7% | intergenic (‑349/+249) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
RA | 4,143,605 | G→T | 24.7% | intergenic (‑579/+19) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
RA | 4,144,697 | C→A | 10.2% | A27S (GCA→TCA) | argE ← | acetylornithine deacetylase |
RA | 4,144,787 | C→A | 5.8% | intergenic (‑12/‑142) | argE ← / → argC | acetylornithine deacetylase/N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding |
RA | 4,150,043 | G→T | 12.7% | H226N (CAC→AAC) | sthA ← | pyridine nucleotide transhydrogenase, soluble |
RA | 4,150,091 | G→T | 8.2% | R210S (CGC→AGC) | sthA ← | pyridine nucleotide transhydrogenase, soluble |
RA | 4,150,197 | G→T | 21.0% | H174Q (CAC→CAA) | sthA ← | pyridine nucleotide transhydrogenase, soluble |
RA | 4,158,047 | G→T | 20.6% | noncoding (1461/1542 nt) | rrsB → | 16S ribosomal RNA of rrnB operon |
RA | 4,163,570 | T→A | 30.5% | I187I (ATT→ATA) | birA → | bifunctional biotin‑[acetylCoA carboxylase] holoenzyme synthetase/ DNA‑binding transcriptional repressor, bio‑5'‑AMP‑binding |
RA | 4,167,908 | T→A | 16.8% | W80R (TGG→AGG) | nusG → | transcription termination factor |
RA | 4,168,956 | C→A | 7.1% | I50I (ATC→ATA) | rplA → | 50S ribosomal subunit protein L1 |
RA | 4,173,145 | A→T | 54.0% | Q658L (CAG→CTG) | rpoB → | RNA polymerase, beta subunit |
RA | 4,176,823 | G→T | 93.7% | D516Y (GAC→TAC) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,177,037 | T→A | 5.6% | L587Q (CTG→CAG) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,178,758 | G→T | 25.2% | G1161C (GGT→TGT) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,183,054 | C→A | 11.0% | A151S (GCG→TCG) | thiF ← | adenylyltransferase, modifies ThiS C‑terminus |
RA | 4,189,766 | C→A | 7.0% | T112K (ACG→AAG) | yjaG → | DUF416 domain protein |
RA | 4,205,855 | A→T | 7.8% | A150A (GCA→GCT) | aceB → | malate synthase A |
RA | 4,206,588 | G→T | 5.6% | E395* (GAA→TAA) | aceB → | malate synthase A |
RA | 4,207,552 | G→T | 37.6% | M172I (ATG→ATT) | aceA → | isocitrate lyase |
RA | 4,207,558 | G→T | 28.2% | A174A (GCG→GCT) | aceA → | isocitrate lyase |
RA | 4,211,576 | G→T | 90.3% | S280R (AGC→AGA) | arpA ← | ankyrin repeat protein |
RA | 4,211,803 | G→A | 92.1% | P205S (CCT→TCT) | arpA ← | ankyrin repeat protein |
RA | 4,214,563 | A→T | 42.3% | T270S (ACC→TCC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
RA | 4,217,818 | G→T | 8.2% | V54F (GTT→TTT) | yjbB → | putative Na+/Pi‑cotransporter |
RA | 4,218,928 | G→A | 22.3% | E424K (GAA→AAA) | yjbB → | putative Na+/Pi‑cotransporter |
RA | 4,219,081 | C→A | 16.2% | R475S (CGC→AGC) | yjbB → | putative Na+/Pi‑cotransporter |
RA | 4,220,948 | G→T | 14.7% | D223Y (GAT→TAT) | rluF → | 23S rRNA pseudouridine(2604) synthase |
RA | 4,230,913 | A→T | 93.0% | W424R (TGG→AGG) | xylE ← | D‑xylose transporter |
RA | 4,235,869 | G→T | 42.3% | A160E (GCG→GAG) | malE ← | maltose transporter subunit |
RA | 4,241,633 | C→T | 31.2% | pseudogene (745/1323 nt) | yjbI → | pseudogene, SopA‑related, pentapeptide repeats‑containing |
RA | 4,242,509 | C→T | 38.0% | L26F (CTC→TTC) | ubiC → | chorismate‑‑pyruvate lyase |
RA | 4,256,589 | G→T | 6.5% | E294* (GAA→TAA) | alr → | alanine racemase, biosynthetic, PLP‑binding |
RA | 4,257,593 | C→T | 16.1% | N184N (AAC→AAT) | tyrB → | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent |
RA | 4,258,418 | G→A | 8.9% | intergenic (+183/+319) | tyrB → / ← yjbS | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent/uncharacterized protein |
RA | 4,259,065 | C→A | 6.5% | intergenic (‑125/‑277) | yjbS ← / → aphA | uncharacterized protein/acid phosphatase/phosphotransferase, class B, non‑specific |
RA | 4,260,920 | G→T | 6.9% | R112L (CGT→CTT) | yjbR → | DUF419 family protein |
RA | 4,265,064 | C→A | 87.1% | intergenic (‑95/‑335) | yjcB ← / → yjcC | putative inner membrane protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,268,967 | A→T | 16.0% | S187S (TCA→TCT) | yjcD → | inner membrane putative guanine permease |
RA | 4,270,316 | G→T | 8.6% | E137* (GAA→TAA) | yjcE → | putative cation/proton antiporter |
RA | 4,271,906 | C→T | 30.3% | E366E (GAG→GAA) | yjcF ← | pentapeptide repeats protein |
RA | 4,273,297 | A→T | 33.3% | W512R (TGG→AGG) | actP ← | acetate transporter |
RA | 4,274,748 | C→A | 6.7% | R28L (CGC→CTC) | actP ← | acetate transporter |
RA | 4,274,926 | A→C | 94.8% | I72M (ATT→ATG) | yjcH ← | DUF485 family inner membrane protein |
RA | 4,275,142 | C→A | 90.8% | intergenic (‑1/+199) | yjcH ← / ← acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase |
RA | 4,286,083 | T→C | 10.4% | intergenic (+361/+170) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
RA | 4,290,080 | G→T | 100% | I256I (ATC→ATA) | mdtP ← | outer membrane factor of efflux pump |
RA | 4,297,485 | G→C | 45.9% | G44G (GGC→GGG) | alsK ← | D‑allose kinase |
RA | 4,297,836 | G→T | 5.7% | L154I (CTT→ATT) | alsE ← | allulose‑6‑phosphate 3‑epimerase |
RA | 4,297,846 | C→A | 92.0% | M150I (ATG→ATT) | alsE ← | allulose‑6‑phosphate 3‑epimerase |
RA | 4,300,333 | T→A | 24.4% | E155D (GAA→GAT) | alsA ← | fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components |
RA | 4,303,614 | T→A | 100% | *150R (TGA→AGA) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
RA | 4,304,132 | G→T | 16.9% | intergenic (+118/+29) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
RA | 4,305,623 | C→A | 5.2% | V93L (GTG→TTG) | phnN ← | ribose 1,5‑bisphosphokinase |
RA | 4,308,395 | G→T | 30.2% | H63N (CAC→AAC) | phnK ← | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
RA | 4,315,905 | T→G | 6.2% | intergenic (‑347/+311) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
RA | 4,317,243 | C→A | 6.5% | R98S (CGT→AGT) | crfC → | clamp‑binding sister replication fork colocalization protein, dynamin‑related |
RA | 4,320,106 | T→A | 15.1% | intergenic (+51/‑213) | yjcZ → / → proP | YjcZ family protein, mutational suppressor of yhjH motility mutation/proline/glycine betaine transporter |
RA | 4,328,019 | G→A | 6.7% | intergenic (‑273/+52) | adiY ← / ← adiA | adi system transcriptional activator/arginine decarboxylase |
RA | 4,330,426 | Δ1 bp | 100% | intergenic (‑88/+111) | adiA ← / ← melR | arginine decarboxylase/melibiose operon transcriptional regulator; autoregulator |
RA | 4,333,431 | C→A | 11.0% | I82I (ATC→ATA) | melB → | melibiose:sodium symporter |
RA | 4,335,195 | G→T | 21.0% | L61I (CTC→ATC) | yjdF ← | DUF2238 family inner membrane protein |
RA | 4,335,262 | C→A | 5.1% | V38V (GTG→GTT) | yjdF ← | DUF2238 family inner membrane protein |
RA | 4,336,681 | A→T | 24.1% | Y155N (TAC→AAC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
RA | 4,338,712 | T→A | 16.1% | intergenic (‑151/+420) | dcuB ← / ← dcuR | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS |
RA | 4,341,023 | A→T | 87.7% | Y153N (TAC→AAC) | dcuS ← | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
RA | 4,345,995 | C→A | 26.0% | V78V (GTG→GTT) | dtpC ← | dipeptide and tripeptide permease |
RA | 4,354,610 | A→T | 20.8% | W84R (TGG→AGG) | dsbD ← | fused thiol:disulfide interchange protein: activator of DsbC/conserved protein |
RA | 4,355,606 | G→T | 8.7% | H329N (CAT→AAT) | dcuA ← | C4‑dicarboxylate antiporter |
RA | 4,358,920 | G→T | 47.7% | R147L (CGC→CTC) | fxsA → | suppressor of F exclusion of phage T7 |
RA | 4,367,605 | G→T | 7.5% | intergenic (‑66/+23) | blc ← / ← ampC | outer membrane lipoprotein (lipocalin), cell division and growth function/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
RA | 4,371,380 | G→T | 12.8% | G252G (GGC→GGA) | frdA ← | fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit |
RA | 4,372,891 | A→T | 29.8% | A144A (GCA→GCT) | epmA → | Elongation Factor P Lys34 lysyltransferase |
RA | 4,373,522 | C→T | 5.0% | intergenic (+85/‑134) | epmA → / → yjeM | Elongation Factor P Lys34 lysyltransferase/putative transporter |
RA | 4,376,178 | C→A | 49.3% | E1004* (GAA→TAA) | mscM ← | mechanosensitive channel protein, miniconductance |
RA | 4,378,778 | G→T | 38.3% | S137* (TCG→TAG) | mscM ← | mechanosensitive channel protein, miniconductance |
RA | 4,388,902 | G→T | 94.2% | A558A (GCG→GCT) | mutL → | methyl‑directed mismatch repair protein |
RA | 4,394,875 | G→T | 44.4% | A124A (GCG→GCT) | purA → | adenylosuccinate synthetase |
RA | 4,396,598 | A→T | 94.2% | E43V (GAA→GTA) | rnr → | exoribonuclease R, RNase R |
RA | 4,396,680 | C→A | 11.1% | F70L (TTC→TTA) | rnr → | exoribonuclease R, RNase R |
RA | 4,398,152 | A→T | 8.9% | Q561L (CAG→CTG) | rnr → | exoribonuclease R, RNase R |
RA | 4,401,343 | A→T | 8.6% | S75S (TCA→TCT) | yjfK → | DUF2491 family protein |
RA | 4,402,665 | T→G | 6.0% | G154G (GGT→GGG) | yjfM → | DUF1190 family protein |
RA | 4,402,850 | G→T | 40.2% | L2L (CTG→CTT) | yjfC → | ATP‑Grasp family ATPase |
RA | 4,402,870 | G→T | 5.2% | R9L (CGA→CTA) | yjfC → | ATP‑Grasp family ATPase |
RA | 4,405,735 | G→T | 25.7% | intergenic (+18/+99) | aidB → / ← yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein |
RA | 4,405,747 | G→T | 12.7% | intergenic (+30/+87) | aidB → / ← yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein |
RA | 4,407,017 | C→T | 7.5% | I83I (ATC→ATT) | yjfP → | acyl CoA esterase |
RA | 4,407,307 | A→T | 13.2% | H180L (CAC→CTC) | yjfP → | acyl CoA esterase |
RA | 4,411,867 | G→T | 5.7% | E115* (GAA→TAA) | ulaC → | L‑ascorbate‑specific enzyme IIA component of PTS |
RA | 4,413,467 | G→T | 10.9% | D269Y (GAT→TAT) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
RA | 4,417,551 | A→C | 93.7% | pseudogene (41/402 nt) | ytfA → | pseudogene, related to transcriptional regulators |
RA | 4,417,755 | C→A | 6.2% | pseudogene (245/402 nt) | ytfA → | pseudogene, related to transcriptional regulators |
RA | 4,421,791 | G→T | 22.4% | R4S (CGC→AGC) | ytfE ← | iron‑sulfur cluster repair protein RIC |
RA | 4,423,419 | G→T | 5.0% | S141R (AGC→AGA) | qorB ← | NAD(P)H:quinone oxidoreductase |
RA | 4,427,761 | G→T | 9.0% | A80S (GCC→TCC) | ytfI → | uncharacterized protein |
RA | 4,428,092 | G→T | 44.5% | G190V (GGA→GTA) | ytfI → | uncharacterized protein |
RA | 4,429,851 | C→A | 16.5% | P394P (CCG→CCT) | ytfL ← | UPF0053 family inner membrane protein |
RA | 4,431,420 | G→T | 7.9% | H192N (CAT→AAT) | msrA ← | methionine sulfoxide reductase A |
RA | 4,440,321 | C→A | 29.5% | I181I (ATC→ATA) | ytfQ → | galactofuranose binding proteint: periplasmic‑binding component of ABC superfamily |
RA | 4,458,254 | T→A | 100% | V271V (GTT→GTA) | mgtA → | magnesium transporter |
RA | 4,458,609 | G→T | 94.4% | D390Y (GAT→TAT) | mgtA → | magnesium transporter |
RA | 4,461,317 | G→T | 6.1% | A299E (GCG→GAG) | pyrB ← | aspartate carbamoyltransferase, catalytic subunit |
RA | 4,462,966 | A→T | 14.9% | Y21N (TAT→AAT) | yjgH ← | UPF0131 family protein |
RA | 4,465,818 | A→C | 7.1% | N189H (AAT→CAT) | yjgL → | uncharacterized protein |
RA | 4,465,836 | C→T | 25.3% | L195L (CTA→TTA) | yjgL → | uncharacterized protein |
RA | 4,468,165 | A→G | 93.7% | intergenic (‑37/‑125) | argI ← / → rraB | ornithine carbamoyltransferase 1/protein inhibitor of RNase E |
RA | 4,469,550 | G→A | 93.6% | A2T (GCT→ACT) | yjgN → | DUF898 family inner membrane protein |
RA | 4,469,639 | T→G | 5.8% | N31K (AAT→AAG) | yjgN → | DUF898 family inner membrane protein |
RA | 4,470,017 | G→A | 90.8% | M157I (ATG→ATA) | yjgN → | DUF898 family inner membrane protein |
RA | 4,470,873 | G→T | 38.8% | R928S (CGT→AGT) | valS ← | valyl‑tRNA synthetase |
RA | 4,474,526 | C→A | 11.9% | D415Y (GAC→TAC) | pepA ← | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
RA | 4,481,249 | A→T | 24.9% | V365E (GTG→GAG) | idnT ← | L‑idonate and D‑gluconate transporter |
RA | 4,494,150 | C→A | 7.9% | V92V (GTC→GTA) | yjhB → | putative transporter |
RA | 4,494,721 | G→A | 41.7% | A283T (GCC→ACC) | yjhB → | putative transporter |
RA | 4,495,560 | A→T | 29.5% | N153Y (AAC→TAC) | yjhC → | putative oxidoreductase |
RA | 4,497,253 | G→T | 17.7% | pseudogene (240/255 nt) | insO → | pseudogene, IS911 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
RA | 4,504,603 | G→T | 6.3% | T631K (ACG→AAG) | fecA ← | ferric citrate outer membrane transporter |
RA | 4,512,693 | T→A | 100% | K407* (AAG→TAG) | yjhG ← | putative dehydratase |
RA | 4,514,591 | G→T | 6.4% | V79V (GTC→GTA) | yjhH ← | putative lyase/synthase |
RA | 4,519,217 | A→T | 9.5% | F282I (TTC→ATC) | sgcC ← | putative PTS system EIIC permease component |
RA | 4,523,001 | T→A | 35.4% | intergenic (‑1/+55) | yjhP ← / ← yjhQ | putative methyltransferase/putative acetyltransferase |
RA | 4,525,234 | G→A | 92.6% | pseudogene (415/1029 nt) | yjhR → | pseudogene, helicase family; putative frameshift suppressor |
RA | 4,529,263 | A→T | 12.8% | L19* (TTA→TAA) | nanC ← | N‑acetylnuraminic acid outer membrane channel protein |
RA | 4,529,937 | C→T | 12.3% | intergenic (‑619/‑837) | nanC ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,530,002 | C→A | 18.1% | intergenic (‑684/‑772) | nanC ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,530,011 | C→T | 5.4% | intergenic (‑693/‑763) | nanC ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,530,300 | G→T | 9.9% | intergenic (‑982/‑474) | nanC ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,531,143 | A→T | 92.2% | I124F (ATT→TTT) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,531,451 | A→G | 15.9% | intergenic (+75/‑403) | fimB → / → fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,532,449 | G→T | 6.5% | *199L (TGA→TTA) | fimE → | tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,541,449 | A→T | 33.0% | intergenic (‑336/‑4) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
RA | 4,552,902 | A→T | 6.1% | N173K (AAT→AAA) | yjiK ← | SdiA‑regulated family putative membrane‑anchored protein; putative phytase‑like esterase |
RA | 4,555,156 | G→T | 90.4% | A171E (GCG→GAG) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
RA | 4,555,620 | T→G | 24.8% | E16D (GAA→GAC) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
RA | 4,562,043 | C→A | 100% | intergenic (+311/‑188) | yjiS → / → yjiT | DUF1127 family protein/pseudogene |
RA | 4,565,742 | C→A | 28.6% | pseudogene (2007/2937 nt) | yjiV → | pseudogene; conserved hypothetical protein |
RA | 4,569,668 | C→A | 5.2% | noncoding (17/77 nt) | symR → | sRNA antisense regulator destabilizing divergent and overlapping symE mRNA |
RA | 4,569,865 | G→T | 11.2% | intergenic (+137/+20) | symR → / ← hsdS | sRNA antisense regulator destabilizing divergent and overlapping symE mRNA/specificity determinant for hsdM and hsdR |
RA | 4,570,803 | G→A | 7.9% | I159I (ATC→ATT) | hsdS ← | specificity determinant for hsdM and hsdR |
RA | 4,571,233 | G→A | 42.5% | S16F (TCT→TTT) | hsdS ← | specificity determinant for hsdM and hsdR |
RA | 4,573,623 | C→A | 7.5% | pseudogene (3010/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
RA | 4,577,836 | C→A | 9.5% | D283Y (GAC→TAC) | yjiA ← | GTP‑binding protein, putative GTPase |
RA | 4,582,677 | G→T | 9.0% | E402* (GAA→TAA) | tsr → | methyl‑accepting chemotaxis protein I, serine sensor receptor |
RA | 4,584,381 | G→T | 91.6% | I53I (ATC→ATA) | yjjL ← | L‑galactonate transporter |
RA | 4,584,756 | A→T | 46.7% | *305K (TAA→AAA) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,585,338 | A→T | 85.2% | S111T (TCT→ACT) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,590,074 | A→C | 19.4% | V240G (GTA→GGA) | dnaC ← | DNA biosynthesis protein |
RA | 4,591,139 | C→A | 43.9% | D66Y (GAT→TAT) | dnaT ← | DNA biosynthesis protein (primosomal protein I) |
RA | 4,592,373 | G→T | 8.4% | pseudogene (303/771 nt) | yjjP ← | pseudogene, premature stop codon, putative structural protein |
RA | 4,596,243 | T→A | 45.6% | intergenic (‑25/+243) | leuQ ← / ← rsmC | tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
RA | 4,604,195 | A→G | 5.1% | intergenic (+118/+302) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
RA | 4,604,966 | G→T | 7.9% | A132E (GCG→GAG) | yjjW ← | putative pyruvate formate lyase activating enzyme |
RA | 4,609,367 | A→T | 7.0% | *441L (TAA→TTA) | deoA → | thymidine phosphorylase |
RA | 4,611,581 | C→A | 6.9% | intergenic (+162/‑5) | deoD → / → yjjJ | purine‑nucleoside phosphorylase/putative protein kinase |
RA | 4,612,781 | C→A | 23.4% | A399E (GCG→GAG) | yjjJ → | putative protein kinase |
RA | 4,617,009 | G→T | 23.8% | A427A (GCG→GCT) | radA → | DNA repair protein |
RA | 4,624,581 | C→A | 17.6% | E183* (GAA→TAA) | rob ← | right oriC‑binding transcriptional activator, AraC family |
RA | 4,625,288 | T→C | 89.7% | intergenic (‑161/‑50) | rob ← / → creA | right oriC‑binding transcriptional activator, AraC family/putative periplasmic protein |
RA | 4,629,324 | G→T | 9.7% | D444Y (GAT→TAT) | creD → | inner membrane protein |
RA | 4,629,649 | A→T | 25.2% | Y159N (TAC→AAC) | arcA ← | response regulator in two‑component regulatory system with ArcB or CpxA |
RA | 4,629,850 | C→T | 14.3% | G92S (GGC→AGC) | arcA ← | response regulator in two‑component regulatory system with ArcB or CpxA |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | CP009273 | 373848 | 375111 | 1264 | 213 [211] | [210] 213 | frmA–[frmR] | frmA,[frmR] |
* | * | ÷ | CP009273 | 4100592 | 4101523 | 932 | 212 [210] | [208] 213 | [cdh]–tpiA | [cdh],tpiA |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 360104 = | 241 (0.800) | 240 (0.800) | 134/278 | NT | 49.9% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
* | ? | CP009273 | = 360278 | NA (NA) | 3771 (13.310) +TTAATTAA |
196/262 | NT | 92.6% | intergenic (‑212/+383) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 361823 | 320 (1.060) | coding (831/834 nt) | mhpR | mhp operon transcriptional activator | |||||
* | ? | CP009273 | 360652 = | 316 (1.050) | 3746 (18.690) +46 bp |
186/186 | NT | 95.4% | intergenic (‑586/+9) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 1317577 | 222 (0.740) | coding (101/882 nt) | yciV | PHP domain protein | |||||
* | ? | CP009273 | 376716 = | NA (NA) | 235 (0.780) | 131/278 | NT | 92.5% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
? | CP009273 | 566411 = | 19 (0.060) | coding (63/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | = 378046 | NA (NA) | 315 (1.050) | 166/278 | NT | 94.3% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
? | CP009273 | = 566415 | 19 (0.060) | coding (67/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | 776825 = | 209 (0.700) | 26 (0.090) +G |
12/276 | NT | 10.8% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
? | CP009273 | = 2514488 | 225 (0.750) | noncoding (216/1345 nt) | IS186 | repeat region | |||||
* | ? | CP009273 | 1203246 = | 22 (0.070) | 122 (0.460) | 84/246 | NT | 82.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | 1205075 = | 33 (0.120) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 1203261 | 21 (0.070) | 113 (0.430) | 76/246 | NT | 81.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | = 1205058 | 33 (0.120) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | 1635219 = | 16 (0.050) | 249 (0.840) | 140/274 | NT | 94.0% | intergenic (‑377/+377) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 2063752 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
* | ? | CP009273 | = 1635223 | 16 (0.050) | 268 (0.890) | 143/278 | NT | 94.4% | intergenic (‑381/+373) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 1645805 | NA (NA) | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 1645805 | NA (NA) | 20 (0.070) | 16/278 | NT | 7.0% | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
? | CP009273 | 2310157 = | 266 (0.880) | coding (502/651 nt) | rcsB | response regulator in two‑component regulatory system with RcsC and YojN | |||||
* | ? | CP009273 | = 2063756 | NA (NA) | 5 (0.020) | 3/272 | NT | NA | pseudogene (6/205 nt) | yoeA | CP4‑44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C‑terminal deletion |
? | CP009273 | 2989723 = | NA (NA) | noncoding (1328/1331 nt) | IS2 | repeat region | |||||
* | ? | CP009273 | = 2811301 | 218 (0.720) | 20 (0.080) | 16/238 | NT | 9.5% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
? | CP009273 | 2811851 = | 195 (0.760) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
* | ? | CP009273 | = 3180783 | NA (NA) | 137 (0.460) | 84/274 | NT | 40.9% | pseudogene (4/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
? | CP009273 | = 3833569 | 201 (0.670) | intergenic (‑216/‑6) | nlpA/yicS | cytoplasmic membrane lipoprotein‑28/putative periplasmic protein | |||||
* | ? | CP009273 | = 3180784 | NA (NA) | 17 (0.060) | 14/276 | NT | 5.4% | pseudogene (5/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
? | CP009273 | = 3357635 | 298 (0.990) | coding (1470/2382 nt) | yhcD | putative outer membrane fimbrial subunit usher protein | |||||
* | ? | CP009273 | = 3180785 | NA (NA) | 21 (0.070) | 20/278 | NT | 7.8% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
? | CP009273 | 3358366 = | 249 (0.830) | coding (2201/2382 nt) | yhcD | putative outer membrane fimbrial subunit usher protein | |||||
* | ? | CP009273 | = 3358370 | 247 (0.820) | 16 (0.050) | 14/278 | NT | 6.1% | coding (2205/2382 nt) | yhcD | putative outer membrane fimbrial subunit usher protein |
? | CP009273 | 4487998 = | NA (NA) | intergenic (+241/‑91) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
* | ? | CP009273 | 3833562 = | 201 (0.670) | 114 (0.380) | 81/276 | NT | 36.4% | intergenic (‑209/‑13) | nlpA/yicS | cytoplasmic membrane lipoprotein‑28/putative periplasmic protein |
? | CP009273 | 4487999 = | NA (NA) | intergenic (+242/‑90) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |