mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2825067 | 284 (1.070) | 10 (0.040) | 8/268 | NT | 3.8% | coding (582/1515 nt) | norR | anaerobic nitric oxide reductase DNA‑binding transcriptional activator |
| ? | CP009273 | 2827125 = | 234 (0.910) | coding (1291/1440 nt) | norV | anaerobic nitric oxide reductase flavorubredoxin | |||||
| * | ? | CP009273 | = 2463988 | 181 (0.680) | 3 (0.010) | 3/278 | NT | 1.6% | intergenic (+47/‑306) | gtrS/tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| ? | CP009273 | = 2991050 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | = 2169361 | 243 (0.910) | 6 (0.020) | 5/270 | NT | 2.5% | coding (440/1263 nt) | gatZ | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
| ? | CP009273 | 2169367 = | 235 (0.910) | coding (434/1263 nt) | gatZ | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit | |||||
| * | ? | CP009273 | = 2063752 | NA (NA) | 6 (0.020) | 4/278 | NT | 2.3% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | CP009273 | 2753865 = | 260 (0.980) | intergenic (+112/‑41) | yfjI/yfjJ | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | CP009273 | = 1645805 | NA (NA) | 11 (0.040) | 5/278 | NT | 4.0% | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
| ? | CP009273 | 2310157 = | 264 (0.990) | coding (502/651 nt) | rcsB | response regulator in two‑component regulatory system with RcsC and YojN | |||||
| * | ? | CP009273 | = 361823 | 288 (1.080) | 5 (0.020) +TTAATTAA |
3/262 | NT | 2.0% | coding (831/834 nt) | mhpR | mhp operon transcriptional activator |
| ? | CP009273 | 4033991 = | 224 (0.840) | noncoding (115/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||