mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4096064 = | 272 (0.980) | 14 (0.050) | 11/274 | NT | 4.9% | coding (317/501 nt) | cpxP | inhibitor of the cpx response; periplasmic adaptor protein |
| ? | CP009273 | 4487999 = | NA (NA) | intergenic (+242/‑90) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | = 3330820 | 316 (1.130) | 3 (0.010) | 3/256 | NT | 1.1% | coding (431/636 nt) | mlaC | ABC transporter maintaining OM lipid asymmetry, periplasmic binding protein |
| ? | CP009273 | 3331036 = | 249 (0.960) | coding (215/636 nt) | mlaC | ABC transporter maintaining OM lipid asymmetry, periplasmic binding protein | |||||
| * | ? | CP009273 | = 3180785 | NA (NA) | 9 (0.030) | 7/276 | NT | 3.2% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | = 4096069 | 274 (0.980) | coding (322/501 nt) | cpxP | inhibitor of the cpx response; periplasmic adaptor protein | |||||
| * | ? | CP009273 | 3179456 = | NA (NA) | 8 (0.030) | 6/274 | NT | 3.2% | intergenic (+8/‑90) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3357824 | 244 (0.880) | coding (1659/2382 nt) | yhcD | putative outer membrane fimbrial subunit usher protein | |||||
| * | ? | CP009273 | = 2811027 | 284 (1.020) | 4 (0.020) | 4/234 | NT | 2.1% | intergenic (‑165/+116) | yqaB/argQ | fructose‑1‑P and 6‑phosphogluconate phosphatase/tRNA‑Arg |
| ? | CP009273 | 2811301 = | 138 (0.580) | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | CP009273 | 1874084 = | 290 (1.040) | 6 (0.020) | 4/272 | NT | 2.1% | coding (122/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | = 2509093 | NA (NA) | intergenic (+171/+29) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||
| * | ? | CP009273 | = 1734949 | 274 (0.980) | 3 (0.010) | 3/256 | NT | 1.1% | coding (782/1212 nt) | ydhC | putative arabinose efflux transporter |
| ? | CP009273 | 1735166 = | 285 (1.100) | coding (999/1212 nt) | ydhC | putative arabinose efflux transporter | |||||
| * | ? | CP009273 | 1549116 = | 281 (1.010) | 6 (0.020) | 6/274 | NT | 2.2% | coding (811/1698 nt) | maeA | malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
| ? | CP009273 | = 1561885 | 257 (0.930) | coding (1196/1320 nt) | yddW | liprotein, glycosyl hydrolase homolog | |||||
| * | ? | CP009273 | = 360286 | NA (NA) | 3 (0.010) +AATTC |
3/266 | NT | 1.2% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 247 (0.890) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||