mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
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| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3180784 | NA (NA) | 18 (0.100) | 15/272 | NT | 1.2% | pseudogene (5/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3745853 = | 1537 (8.190) | coding (502/975 nt) | yiaU | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | 3179457 = | NA (NA) | 31 (0.170) | 20/270 | NT | 2.0% | intergenic (+9/‑89) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3745860 | 1540 (8.210) | coding (509/975 nt) | yiaU | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | = 2897398 | 298 (1.590) | 3 (0.020) | 3/222 | NT | 1.4% | intergenic (+665/+708) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | CP009273 | 2897704 = | 171 (1.130) | intergenic (+971/+402) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | CP009273 | = 1463497 | NA (NA) | 7 (0.040) | 6/274 | NT | 3.1% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | CP009273 | 1520976 = | 217 (1.160) | coding (473/618 nt) | yncG | glutathione S‑transferase homolog | |||||
| * | ? | CP009273 | 1390302 = | NA (NA) | 3 (0.020) | 3/272 | NT | 1.6% | intergenic (‑123/‑31) | ynaI/insH1 | mechanosensitive channel protein, very small conductance/IS5 transposase and trans‑activator |
| ? | CP009273 | 1541014 = | 188 (1.000) | coding (413/882 nt) | yddG | aromatic amino acid exporter | |||||
| * | ? | CP009273 | = 776902 | 131 (0.700) | 3 (0.020) | 3/234 | NT | 2.9% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | CP009273 | 777267 = | 90 (0.560) | intergenic (+159/‑274) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | CP009273 | = 776678 | 139 (0.740) | 5 (0.030) | 3/238 | NT | 4.1% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | CP009273 | 2514844 = | 113 (0.690) | noncoding (572/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | = 604803 | NA (NA) | 5 (0.030) | 4/268 | NT | 2.9% | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
| ? | CP009273 | = 1417787 | 169 (0.900) | pseudogene (330/444 nt) coding (131/186 nt) |
rzpR rzoR |
pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS Rac prophage; putative lipoprotein |
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| * | ? | CP009273 | 603469 = | NA (NA) | 4 (0.020) | 4/268 | NT | 2.3% | intergenic (+25/‑52) | hokE/insL1 | toxic polypeptide, small/IS186 transposase |
| ? | CP009273 | 1417774 = | 176 (0.940) | pseudogene (317/444 nt) coding (118/186 nt) |
rzpR rzoR |
pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS Rac prophage; putative lipoprotein |
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| * | ? | CP009273 | = 361503 | 7405 (39.470) | 11 (0.060) | 8/258 | NT | 0.15% | coding (241/1083 nt) | lacI | DNA‑binding transcriptional repressor |
| ? | CP009273 | 361627 = | 7278 (41.210) | coding (117/1083 nt) | lacI | DNA‑binding transcriptional repressor | |||||