mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3498972 | 177 (0.820) | 7 (0.040) | 5/242 | NT | 4.0% | coding (408/1086 nt) | yhfS | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| ? | CP009273 | 3499180 = | 178 (0.930) | coding (200/1086 nt) | yhfS | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
| * | ? | CP009273 | = 3180784 | NA (NA) | 7 (0.030) | 4/272 | NT | 1.2% | pseudogene (5/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3745853 = | 574 (2.650) | coding (502/975 nt) | yiaU | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | 3179457 = | NA (NA) | 7 (0.030) | 6/270 | NT | 1.2% | intergenic (+9/‑89) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3745860 | 575 (2.650) | coding (509/975 nt) | yiaU | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | = 2871515 | 224 (1.030) | 3 (0.020) | 3/216 | NT | 1.6% | intergenic (+538/+413) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871701 = | 195 (1.140) | intergenic (+724/+227) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | = 2575057 | NA (NA) | 4 (0.020) | 3/236 | NT | 2.2% | noncoding (51/69 nt) | REP179 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP179 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 2575077 = | 177 (0.950) | intergenic (+79/+16) | tktB/ypfG | transketolase 2, thiamine triphosphate‑binding/DUF1176 family protein | |||||
| * | ? | CP009273 | = 1938494 | 223 (1.030) | 3 (0.020) | 3/240 | NT | 1.5% | noncoding (19/127 nt) | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 1938592 = | 201 (1.060) | noncoding (117/127 nt) | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | CP009273 | = 1391495 | NA (NA) | 8 (0.040) | 7/274 | NT | 3.2% | intergenic (+146/‑127) | insH1/ynaJ | IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein |
| ? | CP009273 | = 1541018 | 244 (1.130) | coding (409/882 nt) | yddG | aromatic amino acid exporter | |||||
| * | ? | CP009273 | 1390302 = | NA (NA) | 10 (0.050) | 7/272 | NT | 3.9% | intergenic (‑123/‑31) | ynaI/insH1 | mechanosensitive channel protein, very small conductance/IS5 transposase and trans‑activator |
| ? | CP009273 | 1541014 = | 249 (1.150) | coding (413/882 nt) | yddG | aromatic amino acid exporter | |||||
| * | ? | CP009273 | = 776678 | 126 (0.580) | 3 (0.020) | 3/238 | NT | 2.7% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | CP009273 | 2514844 = | 103 (0.550) | noncoding (572/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | = 604803 | NA (NA) | 6 (0.030) | 6/268 | NT | 2.6% | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
| ? | CP009273 | = 1417787 | 226 (1.040) | pseudogene (330/444 nt) coding (131/186 nt) |
rzpR rzoR |
pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS Rac prophage; putative lipoprotein |
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