breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4615996 =	258 (0.970)	7 (0.030)	6/262	NT	2.8%	coding (268/1383 nt)	radA	DNA repair protein
	?	CP009273	= 4615992	243 (0.960)					coding (264/1383 nt)	radA	DNA repair protein
*	?	CP009273	3179455 =	NA (NA)	6 (0.020)	6/276	NT	2.4%	intergenic (+7/‑91)	yqiG/insC1	pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA
	?	CP009273	= 3360465	239 (0.900)					coding (181/717 nt)	yhcF	putative transcriptional regulator
*	?	CP009273	= 1282362	150 (0.560)	7 (0.030)	4/236	NT	4.5%	intergenic (+380/+160)	narI/rttR	nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript
	?	CP009273	1283013 =	172 (0.760)					noncoding (66/85 nt)	tyrT	tRNA‑Tyr
*	?	CP009273	= 360286	NA (NA)	4 (0.020) +AATTC	3/266	NT	1.7%	intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	3416618 =	246 (0.920)					intergenic (+65/+164)	yhdZ/rrfF	putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon
*	?	CP009273	= 312810	268 (1.010)	8 (0.030)	7/276	NT	2.9%	pseudogene (71/684 nt)	ykgA	pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein
	?	CP009273	= 1463497	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region
*	?	CP009273	312806 =	260 (0.980)	8 (0.030)	6/276	NT	3.0%	pseudogene (75/684 nt)	ykgA	pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein
	?	CP009273	1462167 =	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region