mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 85 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB122 | 3,440,348 | 0 | T | G | 57.1% | ‑4.8 / 14.6 | 45 | A19A (GCT→GCG) | CJ019_03266 | hypothetical protein |
| * | ACB122 | 5,974,074 | 0 | A | C | 57.1% | 6.3 / 25.1 | 39 | Q688P (CAG→CCG) | sasA_19 | Adaptive‑response sensory‑kinase SasA |
| * | ACB122 | 4,927,839 | 0 | T | G | 56.0% | ‑1.3 / 11.0 | 27 | Q192P (CAG→CCG) | srp54 | Signal recognition particle 54 kDa protein |
| * | ACB122 | 2,094,817 | 0 | T | G | 55.6% | ‑3.2 / 16.6 | 40 | Q183P (CAG→CCG) | CJ019_01995 | hypothetical protein |
| * | ACB122 | 759,413 | 0 | T | G | 55.2% | 4.3 / 20.6 | 30 | intergenic (+22/‑146) | mmuM_1/CJ019_00729 | Homocysteine S‑methyltransferase/L‑methionine gamma‑lyase |
| * | ACB122 | 4,245,145 | 0 | A | C | 53.3% | 12.0 / 34.4 | 53 | L178R (CTG→CGG) | CJ019_03982 | Crotonyl‑CoA hydratase |
| * | ACB122 | 1,974,160 | 0 | T | G | 52.2% | 12.2 / 22.3 | 23 | intergenic (+42/‑258) | rpsA/ihfB | 30S ribosomal protein S1/Integration host factor subunit beta |
| * | ACB122 | 1,740,399 | 0 | T | G | 52.0% | 4.2 / 13.7 | 25 | T56P (ACC→CCC) | CJ019_01643 | hypothetical protein |
| * | ACB122 | 3,044,638 | 0 | A | C | 51.8% | 6.7 / 19.1 | 27 | Q94P (CAG→CCG) | rcsC_5 | Sensor histidine kinase RcsC |
| * | ACB122 | 3,923,486 | 0 | A | C | 51.8% | 1.4 / 19.1 | 27 | W423G (TGG→GGG) | CJ019_03707 | hypothetical protein |
| * | ACB122 | 690,139 | 1 | . | G | 50.0% | 7.6 / 11.6 | 8 | intergenic (+16/‑2443) | bauC/PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| * | ACB122 | 994,229 | 0 | T | G | 50.0% | 32.6 / 12.3 | 46 | D52E (GAT→GAG) | CJ019_00938 | hypothetical protein |
| * | ACB122 | 2,094,808 | 0 | A | C | 50.0% | 1.0 / 10.2 | 37 | L186R (CTG→CGG) | CJ019_01995 | hypothetical protein |
| * | ACB122 | 5,688,637 | 0 | A | C | 49.1% | 23.2 / 16.9 | 57 | S236R (AGC→CGC) | pyrC' | Dihydroorotase‑like protein |
| * | ACB122 | 3,515,112 | 0 | T | G | 48.9% | 13.9 / 17.6 | 45 | intergenic (+36/+365) | CJ019_03333/vldH | hypothetical protein/Validoxylamine A 7'‑phosphate phosphatase |
| * | ACB122 | 3,626,106 | 0 | T | G | 47.1% | 20.7 / 12.5 | 34 | V174G (GTG→GGG) | hcf136_3 | Ycf48‑like protein |
| * | ACB122 | 6,020,340 | 0 | A | C | 46.7% | 26.6 / 18.5 | 64 | L58R (CTG→CGG) | ycaD_4 | putative MFS‑type transporter YcaD |
| * | ACB122 | 2,725,639 | 0 | T | G | 46.5% | 5.7 / 13.1 | 43 | V640G (GTG→GGG) | polB | DNA polymerase II |
| * | ACB122 | 3,134,567 | 0 | T | G | 43.9% | 16.8 / 10.8 | 41 | L143V (TTG→GTG) | CJ019_02952 | hypothetical protein |
| * | ACB122 | 1,721,878 | 0 | A | C | 42.9% | 11.7 / 14.2 | 35 | G95G (GGT→GGG) | CJ019_01617 | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB122 | = 5981413 | 43 (0.520) | 5 (0.060) | 5/238 | 6.4 | 10.6% | intergenic (+51/‑638) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein |
| ? | ACB122 | 5981635 = | 44 (0.560) | intergenic (+273/‑416) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein | |||||
| * | ? | ACB122 | 2460725 = | 101 (1.210) | 3 (0.040) | 3/240 | 7.6 | 3.0% | coding (558/831 nt) | queF | NADPH‑dependent 7‑cyano‑7‑deazaguaninereductase |
| ? | ACB122 | 3581727 = | 101 (1.280) | coding (517/1272 nt) | ydcO_3 | Inner membrane protein YdcO | |||||