breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 44,301 (T)9→8 intergenic (+132/‑359) oprD_1 → / → czcR_2 Porin D/Transcriptional activator protein CzcR
RA 120,983 (T)9→8 intergenic (+280/+92) polA → / ← engB DNA polymerase I/putative GTP‑binding protein EngB
RA 179,484 T→C C316R (TGC→CGC)  CJ019_00182 → hypothetical protein
RA 690,144 A→G intergenic (+21/‑2438) bauC → / → PP_RS08750 Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val
RA 690,150 T→G intergenic (+27/‑2432) bauC → / → PP_RS08750 Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val
RA 3,061,793 G→A S592N (AGC→AAC)  qedA_2 → Quinoprotein alcohol dehydrogenase (cytochromec)
RA 3,957,351 G→A H100Y (CAC→TAC)  dmlR_13 ← HTH‑type transcriptional regulator DmlR
RA 5,757,239 (A)6→5 coding (781/834 nt) CJ019_05400 → hypothetical protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ KT2440 346090 346227 138 23 [20] [22] 23 [btuD_1] [btuD_1]
* * ÷ KT2440 517190 517328 139 27 [17] [22] 23 tyrS/birA Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA
* * ÷ KT2440 674234 674401 168 23 [19] [22] 23 [nimR_1]–[mcpH_2] [nimR_1],[mcpH_2]
* * ÷ KT2440 1585602 1585727 126 23 [21] [22] 23 CJ019_01493 hypothetical protein
* * ÷ KT2440 1914560 1914659 100 24 [17] [21] 26 [ppsC_1]–[CJ019_01830] [ppsC_1],[CJ019_01830]
* * ÷ KT2440 2467207 2467236 30 27 [2] [21] 23 CJ019_02325/tal hypothetical protein/Transaldolase
* * ÷ KT2440 3769360 3769497 138 23 [22] [21] 29 [CJ019_03581] [CJ019_03581]
* * ÷ KT2440 3944700 3944829 130 23 [21] [22] 23 CJ019_03729/CJ019_03730 hypothetical protein/hypothetical protein
* * ÷ KT2440 4523597 4523740 144 23 [20] [22] 23 [CJ019_04289] [CJ019_04289]
* * ÷ KT2440 4734433 4734563 131 23 [22] [21] 23 [CJ019_04468] [CJ019_04468]
* * ÷ KT2440 4846248 4846335 88 23 [22] [22] 23 recR/ybaB Recombination protein RecR/Nucleoid‑associated protein YbaB
* * ÷ KT2440 5549389 5549507 119 24 [22] [22] 23 CJ019_05226/CJ019_05227 hypothetical protein/hypothetical protein
* * ÷ KT2440 5551638 5551790 153 24 [19] [22] 23 [purA] [purA]
* * ÷ KT2440 5891528 5891670 143 24 [22] [22] 23 [czcA_3] [czcA_3]
* * ÷ KT2440 5896948 5897046 99 24 [22] [19] 23 [CJ019_05521] [CJ019_05521]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? KT2440 4918800 =0 (0.000)100 (1.610) 40/254 0.2 100% coding (7/789 nt) soj_1 Sporulation initiation inhibitor protein Soj
?KT2440 = 5539492 NA (NA)intergenic (‑358/+71) CJ019_03622/rlmB IS110 family transposase ISPpu9/23S rRNA (guanosine‑2'‑O‑)‑methyltransferaseRlmB
* ? KT2440 = 49188010 (0.000)53 (0.850) 35/256 0.4 100% coding (6/789 nt) soj_1 Sporulation initiation inhibitor protein Soj
?KT2440 5216408 = NA (NA)intergenic (‑50/+386) rhaS_5/CJ019_01212 HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9